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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070323 ID=TCONS_00070323|Name=TCONS_00070323|organism=Clytia hemisphaerica|type=transcript|length=1499bp
TTTTGCGCCAAGTTACACGAGTTCCCTTTTTGCCTAAATCTGCCCCAGGT
TTTATATCTCAGGATTTGAAAgtgctattgacttgaaattttgactagTG
TTAGGTATTGGCAATACAATATACAAGCTTGCTGTCAAAATTTGAGCGAA
ATCGGATAAGTGGTTATGCAGAACGTGAGCATTTTGGGTAAAATactgac
cggtctgtaaaataccaactaCGCAGGGGACAgaactgaaattttgcaca
ctgccTTATATGGTTAATATCTATCACTGGTGAAAGTCTCAAGTCAAAaa
ctatattttattttatagaaatttcgcaggtctattgacctctatgaaac
aagattaaaattttataatgcagtagcgtagacaagaggggcgcaaactt
tgtgtaggagagcatgTTGAGTTCATGGAAGACATGGTAGTGGACAGCAT
TGATGGAAGAAATAAATCTGGAGACAAGTTGATGTACAAGGACAAATGGA
CCTGGATGTATGGAACGAGCCATTATCACCACTCCAGCCATGCATGAAAA
GATTGTGCAAAAGATTGGAGCTGAATATGCGAAGAAGAAATTCGACCTAC
AAACTTTGATATCGTACATAGACCAAGACTACAAATTTAGACGCTCGTTT
ATTGCCGGACTTGCCAAGAATAAAGATCACCATGTGGAGGTGCTAAAGAA
ATATCCATGCTTTCAAGATCACAGaatggTAATCCACGAAGCATTTCAAG
TAATCGAACACgaacgaaaaatcaaaaagctAACGAATTGCAACACCGAC
CGACTAGAGGTTGAAATCGACCATTTAATAACATGGGCAACTCTAAAACT
TCAGATGATGCCTAAAGACAATAAGCCAGGTAATTAAAAACTCTTGTCAC
CTTTAAGGTAGAAATTTTGGCGCTCAGAGATAAAAAATTCCTTAAACCTC
AAAACCTGGCAAAActtctaccttaagggaactaatttttgcggattTGG
GCccaaaccgcaaaatttagttcctGAAAATTTATCACATGCGAAAAACT
GGTCAAATAAATCACAAAATAGCTCTAATTTTCTTCCAAGTGAGAATCCC
GCTAAGTtaatttcccgcaaaaaatctcaaaattgcgaaccgctaaaatt
agttccctcaAAAAAGGTAATTTCAAGATTGTTTGATTcatcttttataa
aataacaTTTCCTTTCcacaatccttcaagaaatatttgaaacaaagggg
aattcccggtgtaattttgaacaccacaattgatttttaagcgccttaaa
ctacagttggaaagtagagttttaactctgagtNTTATTCTGACAAAGTA
AGTGTCAAAtttagttttaaaatttcacTGCATCATCAAATAAGGGGTTT
TATTTAAGTAACTATTTAATTAACTAACTtttatttaacgttcaaatTCT
AAAATACAGTACTTTTACTTACAATGCCCCCTACAATCAGACACACATG Run BLAST on NCBI protein sequence of TCONS_00070323-protein >TCONS_00070323-protein ID=TCONS_00070323-protein|Name=TCONS_00070323-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MERAIITTPAMHEKIVQKIGAEYAKKKFDLQTLISYIDQDYKFRRSFIAG
LAKNKDHHVEVLKKYPCFQDHRMVIHEAFQVIEHERKIKKLTNCNTDRLE
VEIDHLITWATLKLQMMPKDNKPGN Run BLAST on NCBI transcript from alignment at scaffold_53:25233..31680- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070323 ID=TCONS_00070323|Name=TCONS_00070323|organism=Clytia hemisphaerica|type=transcript|length=6448bp|location=Sequence derived from alignment at scaffold_53:25233..31680- (Clytia hemisphaerica)
TTTTGCGCCAAGTTACACGAGTTCCCTTTTTGCCTAAATCTGCCCCAGGT
TTTATATCTCAGGATTTGAAAGTGCTATTGACTTGAAATTTTGACTAGTG
TTAGGTATTGGCAATACAATATACAAGCTTGCTGTCAAAATTTGAGCGAA
ATCGGATAAGTGGTTATGCAGAACGTGAGCATTTTGGGTAAAATACTGAC
CGGTCTGTAAAATACCAACTACGCAGGGGACAGAACTGAAATTTTGCACA
CTGCCTTATATGGTTAATATCTATCACTGGTGAAAGTCTCAAGTCAAAAA
CTATATTTTATTTTATAGAAATTTCGCAGGTCTATTGACCTCTATGAAAC
AAGATTAAAATTTTATAATGCAGTAGCGTAGACAAGAGGGGCGCAAACTT
TGTGTAGGAGAGCATGTTGAGTTCATGGAAGACATGGTAGTGGACAGCAT
TGATGGAAGAAATAAATCTGGAGACAAGTTGATGTACAAGTAAATAAACT
ATCTTCTTCTTACAGCAGTTTAAATCGAAGTTAGAAGCTCGCAACTGTGG
TACCATTTTGGTACGGGAAAAAGAAGACTAGAGCCGAGACATGTGAGACT
AAATGTCCGGTAACGACTAATATAAACAAAAGCAGAAAACGAAAGTGGTC
GTCAAATTATCGACACCCCAACTTGACGACTACTTCGACAAAAATGCAAA
AAATGTATACATAACAAAATTCCTAAGCAAAAAATAGCCTAAAAAATAAT
CAATCTAGATTCCAAAGATAAAATCTGAAGATTTTTCCAATAGAAATTTC
TTGGGCGGTTTTGTGAATATGTCCGCACAATTGTCATTTGATGGAATATA
GTTATAGTTAATCAGGTTAGTGTTCTGACACTCACGTACAAAATGGAAAC
GGATATCAATATGTTTCGCCTTTGAGTGATTGGTAGGATTTTTGGACAAC
GCTAGGGCTCCTTGGTTATCACAATACATAATAGCATATAACTTTTCACT
TAACATCTCATTAAGCAAATTTCGCTTTAAATAAACAATTTCCTGCGAGG
CGATTGACATAGCAACATATTCTGCCTCACATGTGGATAATGCAATACAA
TTTTGGCGTTTCGATTTCCATGGAATGGGAGGACCAGCAGGATTTAATGC
AATACAGTAACCAGAAATACTTTTCCGATCCTTCGAGGCAGCCCAATCAG
AATCGCAGAAGGCAGTGATTTGCAATCCGTCGGTCGATTTCGTATATTTC
AAACAATAATTTGATGTCTTTTGCAAATAACGGAATACATGTTTCAGCAT
CATCAAATCAGCTGCTGTTGGACACGATAACTTTTGTGATAGTTTCGTAA
CTACATAACTCAGGTCGGGTCGCGTGCAGACCATGGCATAGATAAGGCTA
CCAACCATTTGACGGTAGGAGGTTTGGTCGACTGGCTCGTCTCCTTCCTT
TTCGTACACTTCCGGATTCGGTTCACAAGGCGTTGCACGTGGTTTACAGT
TGGACATGCCAAATCTCTTGAGGATCTTCAAAATATACTCCTCCTGACTC
ATGAGGATTTGGCCTTTAATGCGACAGAAATCGATGCCGAGAAAATGCTT
CAACATTCCAAGATCTTTCATTTTGAAGGCTTGGCTCAGGTGCGATTTGG
TGTCGGTCATTAACGTTGGATCATTGGACGCAAGCATGATATCATCAACC
CATACAAGTAAATAACTAACGGAATCATTGATTGATTTTGTGAAAAGGCA
AGGGTCAGCTTTCGATTGAACAAACCCATTGTCCTTAAGATGATCATGAA
AAGTGGAATTCCAATTACGACCACTTTGTTTAAGTCCGTACAAGGATTTC
TGTAGTTTCCAAACAAAAGCAGGGTTGGTTGGCTTGTATCCTTCTGGTGC
GTTAACATAAATCTCCTCCTCAATAGGTGCATGAAGAAAAGCGGTTTTGA
CGTCCATCTGCTGGAGATCAAGATCACGATGGGCAGCAACTTGGATAAGG
GTACGAACGGTTTCCATTCTGGCTGTAGGTGAAAAAGTCTCATGGTAATC
GATACCTTCAACTTGAGAGTATCCTTTTGCAACAAAACGAGCTTTGAAAG
TCGGGTTTTCAGGGTCACCTTTCAAATTAAAAACCCATTTTCCCCCAACT
AACGATTTATTGGAAGGAAGCTCTTTTTCGATAAATGTGTGATTCGATTT
CAAGCTCTCAAATTCATTGTCCATAGCTTGTTTCCATTGCTTGGCTTCTG
GACAGGACAGGGCTTCTTTGAAGGATGCAGGTGTGTTAACGTGGTAACAA
TAATGCACGAATTTGGCAGCGTCAATTTCATCAGGTTCATTCTTTGGTTC
ATCTGGGATTGACGGTTGTTGACGTGATCTGAGAGGATACGATTTCCATG
GTTCAGATTTAGCGGTGACGGTCATAGGCTTATCGTCAGATGGATCTGGT
TTGACGGTCGGTTCATCAGCAACTGGTAAGGTATCGTCAGCAACTGGTAT
TTGGTTGACTGTGGGTAGAAATTTTACGAGACGATGTTTTGAGACTGCTT
TGGTTTCAAGGTCATAGACTAGGTAGCTGGGACTATCTCGATCGTATCCG
ACAAAGACTCCTTTAGATGTCCTGGGATCTAGTTTCTTTGGTTTGATGGT
GATAGGATAACAAATCGATCCGAAAACTTGAAGTCGAGCAACGTCTGGTT
TGGAACCGGTAATAAGTCCATACGGAGTGTTCTTAGTCCGCTGACTGTAG
CATCGGTTACGGATGTGAGTTGCAGTCATGACGGCATACGTCCACAGATT
CTTGGGTAAACCTGCCTCTAACAATAATGATCTAGCCATTTCAAACAACG
TGCGCCAACTTCTTTCAGCGGTACCATTTTGATGAGGTGAATATGGGGCA
CTCTTCTCATGTTTGATTTTATGCTTAATCAAAAGATCACTGAACTCATG
AGAAATGAACTCCCCACCATTATCTGATCGAACACGTTTTGGCTCTCCTG
ATGGAAAAATGTCCTCATGAAAACTCAAAGTTTTAACCTTTCCATACGGG
GCAACATCAGCTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCGGTACCATTTTGATGAGG
TGAATATGGGGCACTCTTCTCATGTTTGATTTTATGCTTAATCAAAAGAT
CACTGAACTCATGAGAAATGAACTCCCCACCATTATCTGATCGAACACGT
TTTGGCTCTCCTGATGGAAAAATGTCCTCATGAAAACTTTAACCTTTCCC
ATACGGGGCAACATCAGCTAAGAATTTTTCTGTGGCACGAGTGGTGTCTG
ATTTCTCCTTGAGAAAATAGGTAAACATATTTCCTGAATAATCGTCAGTA
AACACAATGGCATATTTGAAGCCATCCTTAGCAATTGGATCTATAGGTCC
AGAGAGGTCGGTGTGAATCAGTTCAAATGGCTCAGTTGCTCTTACGTCTG
GGTTACGGTTGCGAGTATTCGGTTGTTTGGCCATGATGCAGGTTTCACAG
TCAAATTTGGTTTGGCTGTCACTGATTTTCATTCCCTGGACTACGCTCTC
CATCTTCAGGATGTCAGCCGTGTTGCAGTGACCAAGAATACGATGCCACG
TTTGAAGGCTCTCTGAACGATTAGAGTTGACGACTGACTTGCAAAGGTAA
TACAAACGTTTTTCTTGGAAAATTGGAAAAATAGTTCCATTTGGTGCGAT
AAGTTCATTCCTATCCTCCGAAAATATTACTCTACAACCGTGACTTGTGG
CTGATTTAACAGAAAAAATGCATTGTGGAAAGTCTGGAATAAGCAAAACA
TCTCTCAACTTTACTTCAACAAATTCATTTTCGTTGGTTCGAAATTTGGT
AATAACAGTTCCCTTCTGTTTAGCCACACCATTCACTGTTGTACCATCAG
CTAATTCGATATAGTGGTCACTTGATTTGAATGTCGAATCAACGTCTAGG
AAACACGACTTGTCATTCACTATGTGAGTAGTAGCACCACAATCAACGAG
AAACGTATTCGAGCTAGCTTCAATGTTTGACTTTGTATCACTAGCTTTGA
AAGCAAAAGAGTGATCTTCTCCTTTGGTGGACGTTTTGTTTGCACTGTCC
TTTTTCTTCCTACACTTGTTAGTGTTGTGACTTTTGTTTTTACAGATACT
ACACCACCGACCTTTACTCTTTTTGTCACAGCTGGTTGATTTGTGTCCTG
GAGTTCCACAGGAGTAACATACGATTGGTTTCCTTCCTTCCTGGGCATAG
AGTTTCATTATGGCGGAGGATTGATCAGTAGGGTTAGATTGGGTTCTCAA
ATTTTCGGTTTCTTCAAAATGTCTAAGAGAAGTTTTAAATTTTGCAAAGT
CAGTAACATTTTCTGCTTGAGTTGTAACTGCCACAAAAGCCTTGTACTCG
TCTGGTAAGCCTTTTAAAACCATTGCAATCAATAACGAGTCACTCCCATT
CATCAATCAACCTACAGGCCCATTATAAATTACCTTTCTGGACATTTTGC
TTAGCTTAAAAGGAAAAGTTTTTCTTTTGTATTTTCTAAGTATCTTTATC
TTTTAAACAGGGACAAATGGACCTGGATGTATGGAACGAGCCATTATCAC
CACTCCAGGTATGTGATTTTGCAGCATAGACAATAGATAACCTGAATTAT
TCCAATTATGTCTTCCAAATTGATGTCTGCGGTTACTGTTTTGTTGCTTT
TCTTGACCCATGTCAATAGGGAAAAGGATAATAACCAAAATGTCTTTCAT
TCTTAGCCATGCATGAAAAGATTGTGCAAAAGATTGGAGCTGAATATGCG
AAGAAGAAATTCGACCTACAAACTTTGATATCGTACATAGACCAAGACTA
CAAATTTAGACGCTCGTTTATTGCCGGACTTGCCAAGAATAAAGATCACC
ATGTGGAGGTGCTAAAGAAATATCCATGCTTTCAAGATCACAGAATGGTA
ATTTTTTTCTTCTTCTTTGAATGGGTTAGATGCTTTCAAAGCTATCATTA
TCAAAGATGTCTTTGTGCCTTGGATCTTTTCTTACTAAATTCCCCTTATA
AGCATAAGCAGATTTGCTGATTACTTAGGCATAGCAAGCATACAGGCCTG
AAAATAATTTTGTAAAGTTTACAAAGTTTGCTCGAATATATTCCCCTTAA
ACAGGAGACATAGCCTTTACTTTGCACTTATTTTCCATGTATTAAACCGA
TAAGCATACTACACGCATGATATTCAGCCTGGATTCGAGCCTGACCTAGC
CTGACCAAAGGGCATACACTATAAATACGTATATGTTTGGAACTCTTTCT
CCCCTGGACGTTTATTTTAGCCCAGCTTTTCCTATATACGTTTATTCAAG
TTCCATGTACGTCTATTTATTCAAGTTCTGATTTCACGTCTGTACGTTGT
TTATTAAGTCCAGTTTGATATTATCTTTTGTATGTTTACTAGAGACTCGA
GAAGTTTTACCATTCATACAGGATTTAGTATAAAAGTTTGAGATTTCCAT
TCAAGAACTCCCAAATTTCAAATTCAGGTAATCCACGAAGCATTTCAAGT
AATCGAACACGAACGAAAAATCAAAAAGCTAACGAATTGCAACACCGACC
GACTAGAGGTTGAAATCGACCATTTAATAACATGGGCAACTCTAAAACTT
CAGATGATGCCTAAAGACAATAAGCCAGGTAATTAAAAACTCTTGTCACC
TTTAAGGTAGAAATTTTGGCGCTCAGAGATAAAAAATTCCTTAAACCTCA
AAACCTGGCAAAACTTCTACCTTAAGGGAACTAATTTTTGCGGATTTGGG
CCCAAACCGCAAAATTTAGTTCCTGAAAATTTATCACATGCGAAAAACTG
GTCAAATAAATCACAAAATAGCTCTAATTTTCTTCCAAGTGAGAATCCCG
CTAAGTTAATTTCCCGCAAAAAATCTCAAAATTGCGAACCGCTAAAATTA
GTTCCCTCAAAAAAGGTAATTTCAAGATTGTTTGATTCATCTTTTATAAA
ATAACATTTCCTTTCCACAATCCTTCAAGAAATATTTGAAACAAAGGGGA
ATTCCCGGTGTAATTTTGAACACCACAATTGATTTTTAAGCGCCTTAAAC
TACAGTTGGAAAGTAGAGTTTTAACTCTGAGTNTTATTCTGACAAAGTAA
GTGTCAAATTTAGTTTTAAAATTTCACTGCATCATCAAATAAGGGGTTTT
ATTTAAGTAACTATTTAATTAACTAACTTTTATTTAACGTTCAAATTCTA
AAATACAGTACTTTTACTTACAATGCCCCCTACAATCAGACACACATG Coding sequence (CDS) from alignment at scaffold_53:25233..31680- >TCONS_00070323 ID=TCONS_00070323|Name=TCONS_00070323|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_53:25233..31680- (Clytia hemisphaerica)
GTAATCCACGAAGCATTTCAAGTAATCGAACACGAACGAAAAATCAAAAA
GCTAACGAATTGCAACACCGACCGACTAGAGGTTGAAATCGACCATTTAA
TAACATGGGCAACTCTAAAACTTCAGATGATGCCTAAAGACAATAAGCCA
GGTAATTAACCATGCATGAAAAGATTGTGCAAAAGATTGGAGCTGAATAT
GCGAAGAAGAAATTCGACCTACAAACTTTGATATCGTACATAGACCAAGA
CTACAAATTTAGACGCTCGTTTATTGCCGGACTTGCCAAGAATAAAGATC
ACCATGTGGAGGTGCTAAAGAAATATCCATGCTTTCAAGATCACAGAATG
ATGGAACGAGCCATTATCACCACTCCAGGTAATCCACGAAGCATTTCAAG
TAATCGAACACGAACGAAAAATCAAAAAGCTAACGAATTGCAACACCGAC
CGACTAGAGGTTGAAATCGACCATTTAATAACATGGGCAACTCTAAAACT
TCAGATGATGCCTAAAGACAATAAGCCAGGTAATTAACCATGCATGAAAA
GATTGTGCAAAAGATTGGAGCTGAATATGCGAAGAAGAAATTCGACCTAC
AAACTTTGATATCGTACATAGACCAAGACTACAAATTTAGACGCTCGTTT
ATTGCCGGACTTGCCAAGAATAAAGATCACCATGTGGAGGTGCTAAAGAA
ATATCCATGCTTTCAAGATCACAGAATGATGGAACGAGCCATTATCACCA
CTCCAGGTAATCCACGAAGCATTTCAAGTAATCGAACACGAACGAAAAAT
CAAAAAGCTAACGAATTGCAACACCGACCGACTAGAGGTTGAAATCGACC
ATTTAATAACATGGGCAACTCTAAAACTTCAGATGATGCCTAAAGACAAT
AAGCCAGGTAATTAACCATGCATGAAAAGATTGTGCAAAAGATTGGAGCT
GAATATGCGAAGAAGAAATTCGACCTACAAACTTTGATATCGTACATAGA
CCAAGACTACAAATTTAGACGCTCGTTTATTGCCGGACTTGCCAAGAATA
AAGATCACCATGTGGAGGTGCTAAAGAAATATCCATGCTTTCAAGATCAC
AGAATGATGGAACGAGCCATTATCACCACTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070323-exon-scaffold_53-1575043694:31192..31680 | TCONS_00070323-exon-scaffold_53-1575043694:31192..31680 | Clytia hemisphaerica | exon |
| TCONS_00070323-exon-scaffold_53-1575043694:26923..26970 | TCONS_00070323-exon-scaffold_53-1575043694:26923..26970 | Clytia hemisphaerica | exon |
| TCONS_00070323-exon-scaffold_53-1575043694:26584..26774 | TCONS_00070323-exon-scaffold_53-1575043694:26584..26774 | Clytia hemisphaerica | exon |
| TCONS_00070323-exon-scaffold_53-1575043694:25233..26003 | TCONS_00070323-exon-scaffold_53-1575043694:25233..26003 | Clytia hemisphaerica | exon |
| TCONS_00070323-exon-scaffold_53-1510915933:31192..31680 | TCONS_00070323-exon-scaffold_53-1510915933:31192..31680 | Clytia hemisphaerica | exon |
| TCONS_00070323-exon-scaffold_53-1510915933:26923..26970 | TCONS_00070323-exon-scaffold_53-1510915933:26923..26970 | Clytia hemisphaerica | exon |
| TCONS_00070323-exon-scaffold_53-1510915933:26584..26774 | TCONS_00070323-exon-scaffold_53-1510915933:26584..26774 | Clytia hemisphaerica | exon |
| TCONS_00070323-exon-scaffold_53-1510915933:25233..26003 | TCONS_00070323-exon-scaffold_53-1510915933:25233..26003 | Clytia hemisphaerica | exon |
| TCONS_00070323-exon-scaffold_53-1491911889:31192..31680 | TCONS_00070323-exon-scaffold_53-1491911889:31192..31680 | Clytia hemisphaerica | exon |
| TCONS_00070323-exon-scaffold_53-1491911889:26923..26970 | TCONS_00070323-exon-scaffold_53-1491911889:26923..26970 | Clytia hemisphaerica | exon |
| TCONS_00070323-exon-scaffold_53-1491911889:26584..26774 | TCONS_00070323-exon-scaffold_53-1491911889:26584..26774 | Clytia hemisphaerica | exon |
| TCONS_00070323-exon-scaffold_53-1491911889:25233..26003 | TCONS_00070323-exon-scaffold_53-1491911889:25233..26003 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_53 | supercontig | scaffold_53:25233..31680 - |
Blast
The following BLAST results are available for this feature:
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