|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070322 ID=TCONS_00070322|Name=TCONS_00070322|organism=Clytia hemisphaerica|type=transcript|length=1382bp
ATTTGTGTCCTGGAGTTCCACAGGAGTAACATACGATTGGTTTCCTTCCT
TCCTGGGCATAGAGTTTCATTATGGCGGAGGATTGATCAGTAGGGTTAGA
TTGGGTTCTCAAATTTTCGGTTTCTTCAAAATGTCTAAGAgaagttttaa
attttgcaaAGTCAGTAACATTTTCTGCTTGAGTTGTAACTGCCACAAAA
GCCTTGTACTCGTCTGGTAAGCCTTTTAAAACCATTGCAATCAATAACGA
GTCACTCCCATTCATCAATCAACCTACAGGCCCATTATAAATTACCTTTC
TGGACATTTTGCTTAGCTTAAAaggaaaagtttttcttttgtattttcta
aGTATCTTTATCTTTTAAACAGGGACAAATGGACCTGGATGTATGGAACG
AGCCATTATCACCACTCCAGCCATGCATGAAAAGATTGTGCAAAAGATTG
GAGCTGAATATGCGAAGAAGAAATTCGACCTACAAACTTTGATATCGTAC
ATAGACCAAGACTACAAATTTAGACGCTCGTTTATTGCCGGACTTGCCAA
GAATAAAGATCACCATGTGGAGGTGCTAAAGAAATATCCATGCTTTCAAG
ATCACAGaatggTAATCCACGAAGCATTTCAAGTAATCGAACACgaacga
aaaatcaaaaagctAACGAATTGCAACACCGACCGACTAGAGGTTGAAAT
CGACCATTTAATAACATGGGCAACTCTAAAACTTCAGATGATGCCTAAAG
ACAATAAGCCAGGTAATTAAAAACTCTTGTCACCTTTAAGGTAGAAATTT
TGGCGCTCAGAGATAAAAAATTCCTTAAACCTCAAAACCTGGCAAAActt
ctaccttaagggaactaatttttgcggattTGGGCccaaaccgcaaaatt
tagttcctGAAAATTTATCACATGCGAAAAACTGGTCAAATAAATCACAA
AATAGCTCTAATTTTCTTCCAAGTGAGAATCCCGCTAAGTtaatttcccg
caaaaaatctcaaaattgcgaaccgctaaaattagttccctcaAAAAAGG
TAATTTCAAGATTGTTTGATTcatcttttataaaataacaTTTCCTTTCc
acaatccttcaagaaatatttgaaacaaaggggaattcccggtgtaattt
tgaacaccacaattgatttttaagcgccttaaactacagttggaaagtag
agttttaactctgagtNTTATTCTGACAAAGTAAGTGTCAAAtttagttt
taaaatttcacTGCATCATCAAATAAGGGGTTTTATTTAAGTAACTATTT
AATTAACTAACTtttatttaacgttcaaatTCTAAAATACAGTACTTTTA
CTTACAATGCCCCCTACAATCAGACACACATG Run BLAST on NCBI transcript from alignment at scaffold_53:25233..27342- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070322 ID=TCONS_00070322|Name=TCONS_00070322|organism=Clytia hemisphaerica|type=transcript|length=2110bp|location=Sequence derived from alignment at scaffold_53:25233..27342- (Clytia hemisphaerica)
ATTTGTGTCCTGGAGTTCCACAGGAGTAACATACGATTGGTTTCCTTCCT
TCCTGGGCATAGAGTTTCATTATGGCGGAGGATTGATCAGTAGGGTTAGA
TTGGGTTCTCAAATTTTCGGTTTCTTCAAAATGTCTAAGAGAAGTTTTAA
ATTTTGCAAAGTCAGTAACATTTTCTGCTTGAGTTGTAACTGCCACAAAA
GCCTTGTACTCGTCTGGTAAGCCTTTTAAAACCATTGCAATCAATAACGA
GTCACTCCCATTCATCAATCAACCTACAGGCCCATTATAAATTACCTTTC
TGGACATTTTGCTTAGCTTAAAAGGAAAAGTTTTTCTTTTGTATTTTCTA
AGTATCTTTATCTTTTAAACAGGGACAAATGGACCTGGATGTATGGAACG
AGCCATTATCACCACTCCAGGTATGTGATTTTGCAGCATAGACAATAGAT
AACCTGAATTATTCCAATTATGTCTTCCAAATTGATGTCTGCGGTTACTG
TTTTGTTGCTTTTCTTGACCCATGTCAATAGGGAAAAGGATAATAACCAA
AATGTCTTTCATTCTTAGCCATGCATGAAAAGATTGTGCAAAAGATTGGA
GCTGAATATGCGAAGAAGAAATTCGACCTACAAACTTTGATATCGTACAT
AGACCAAGACTACAAATTTAGACGCTCGTTTATTGCCGGACTTGCCAAGA
ATAAAGATCACCATGTGGAGGTGCTAAAGAAATATCCATGCTTTCAAGAT
CACAGAATGGTAATTTTTTTCTTCTTCTTTGAATGGGTTAGATGCTTTCA
AAGCTATCATTATCAAAGATGTCTTTGTGCCTTGGATCTTTTCTTACTAA
ATTCCCCTTATAAGCATAAGCAGATTTGCTGATTACTTAGGCATAGCAAG
CATACAGGCCTGAAAATAATTTTGTAAAGTTTACAAAGTTTGCTCGAATA
TATTCCCCTTAAACAGGAGACATAGCCTTTACTTTGCACTTATTTTCCAT
GTATTAAACCGATAAGCATACTACACGCATGATATTCAGCCTGGATTCGA
GCCTGACCTAGCCTGACCAAAGGGCATACACTATAAATACGTATATGTTT
GGAACTCTTTCTCCCCTGGACGTTTATTTTAGCCCAGCTTTTCCTATATA
CGTTTATTCAAGTTCCATGTACGTCTATTTATTCAAGTTCTGATTTCACG
TCTGTACGTTGTTTATTAAGTCCAGTTTGATATTATCTTTTGTATGTTTA
CTAGAGACTCGAGAAGTTTTACCATTCATACAGGATTTAGTATAAAAGTT
TGAGATTTCCATTCAAGAACTCCCAAATTTCAAATTCAGGTAATCCACGA
AGCATTTCAAGTAATCGAACACGAACGAAAAATCAAAAAGCTAACGAATT
GCAACACCGACCGACTAGAGGTTGAAATCGACCATTTAATAACATGGGCA
ACTCTAAAACTTCAGATGATGCCTAAAGACAATAAGCCAGGTAATTAAAA
ACTCTTGTCACCTTTAAGGTAGAAATTTTGGCGCTCAGAGATAAAAAATT
CCTTAAACCTCAAAACCTGGCAAAACTTCTACCTTAAGGGAACTAATTTT
TGCGGATTTGGGCCCAAACCGCAAAATTTAGTTCCTGAAAATTTATCACA
TGCGAAAAACTGGTCAAATAAATCACAAAATAGCTCTAATTTTCTTCCAA
GTGAGAATCCCGCTAAGTTAATTTCCCGCAAAAAATCTCAAAATTGCGAA
CCGCTAAAATTAGTTCCCTCAAAAAAGGTAATTTCAAGATTGTTTGATTC
ATCTTTTATAAAATAACATTTCCTTTCCACAATCCTTCAAGAAATATTTG
AAACAAAGGGGAATTCCCGGTGTAATTTTGAACACCACAATTGATTTTTA
AGCGCCTTAAACTACAGTTGGAAAGTAGAGTTTTAACTCTGAGTNTTATT
CTGACAAAGTAAGTGTCAAATTTAGTTTTAAAATTTCACTGCATCATCAA
ATAAGGGGTTTTATTTAAGTAACTATTTAATTAACTAACTTTTATTTAAC
GTTCAAATTCTAAAATACAGTACTTTTACTTACAATGCCCCCTACAATCA
GACACACATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070322-exon-scaffold_53-1575043694:26923..27342 | TCONS_00070322-exon-scaffold_53-1575043694:26923..27342 | Clytia hemisphaerica | exon |
| TCONS_00070322-exon-scaffold_53-1575043694:26584..26774 | TCONS_00070322-exon-scaffold_53-1575043694:26584..26774 | Clytia hemisphaerica | exon |
| TCONS_00070322-exon-scaffold_53-1575043694:25233..26003 | TCONS_00070322-exon-scaffold_53-1575043694:25233..26003 | Clytia hemisphaerica | exon |
| TCONS_00070322-exon-scaffold_53-1510915933:26923..27342 | TCONS_00070322-exon-scaffold_53-1510915933:26923..27342 | Clytia hemisphaerica | exon |
| TCONS_00070322-exon-scaffold_53-1510915933:26584..26774 | TCONS_00070322-exon-scaffold_53-1510915933:26584..26774 | Clytia hemisphaerica | exon |
| TCONS_00070322-exon-scaffold_53-1510915933:25233..26003 | TCONS_00070322-exon-scaffold_53-1510915933:25233..26003 | Clytia hemisphaerica | exon |
| TCONS_00070322-exon-scaffold_53-1491911889:26923..27342 | TCONS_00070322-exon-scaffold_53-1491911889:26923..27342 | Clytia hemisphaerica | exon |
| TCONS_00070322-exon-scaffold_53-1491911889:26584..26774 | TCONS_00070322-exon-scaffold_53-1491911889:26584..26774 | Clytia hemisphaerica | exon |
| TCONS_00070322-exon-scaffold_53-1491911889:25233..26003 | TCONS_00070322-exon-scaffold_53-1491911889:25233..26003 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_53 | supercontig | scaffold_53:25233..27342 - |
Blast
The following BLAST results are available for this feature:
|
