TCONS_00070320 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070320
Unique NameTCONS_00070320
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070320 ID=TCONS_00070320|Name=TCONS_00070320|organism=Clytia hemisphaerica|type=transcript|length=314bp
GGAGAGCTCACTCAGACCCATTCTTCCAGCAAAGACAGAAAGGAGGAGTG
CACTGTGGACAATGGAGATCAAGAGACTCTTCAACATGCAAACATGAGAT
CTCCATTGTAGAGGGTAACATAATACCATAATAGCATTAGCATTGTAGAA
TCTTTTAGTACACATCatggtaaaagaaaaaatatcaattaaaaccttta
aatcgaCTGAATTAGGGAATGTTTACACATGGACAGGATAAGTTTCCACG
AAGCACCAGCAAGAACCAAAGTtgaatttggctgaaaatggctgaaatta
gatttttaatataa
Run BLAST on NCBI

transcript from alignment at scaffold_52:182409..182722

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070320 ID=TCONS_00070320|Name=TCONS_00070320|organism=Clytia hemisphaerica|type=transcript|length=314bp|location=Sequence derived from alignment at scaffold_52:182409..182722 (Clytia hemisphaerica)
ttatattaaaaatctaatttcagccattttcagccaaattcaACTTTGGT
TCTTGCTGGTGCTTCGTGGAAACTTATCCTGTCCATGTGTAAACATTCCC
TAATTCAGtcgatttaaaggttttaattgatattttttcttttaccatGA
TGTGTACTAAAAGATTCTACAATGCTAATGCTATTATGGTATTATGTTAC
CCTCTACAATGGAGATCTCATGTTTGCATGTTGAAGAGTCTCTTGATCTC
CATTGTCCACAGTGCACTCCTCCTTTCTGTCTTTGCTGGAAGAATGGGTC
TGAGTGAGCTCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043796XLOC_043796Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070320-exon-scaffold_52-1491911889:182409..182722TCONS_00070320-exon-scaffold_52-1491911889:182409..182722Clytia hemisphaericaexon
TCONS_00070320-exon-scaffold_52-1510915933:182409..182722TCONS_00070320-exon-scaffold_52-1510915933:182409..182722Clytia hemisphaericaexon
TCONS_00070320-exon-scaffold_52-1575043694:182409..182722TCONS_00070320-exon-scaffold_52-1575043694:182409..182722Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:182409..182722 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.41809	4.3467	3.82468	5.6348	0.506666	0.719938	0.434288	1.6263	0	0.705176	0.366664	0.773127	0.487629	0.233308	0.191811	0.411684	0.285292	1.03965	0.359083	0	1.10151	1.43373	5.80962	5.63391	0.362674	0	0.926365	0	3.21018	4.47831
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070320 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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