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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070313 ID=TCONS_00070313|Name=TCONS_00070313|organism=Clytia hemisphaerica|type=transcript|length=1690bp
AAATGTTAAAAGCGCTACTGGCGTATCGATCTTTTATCCAGTGCTCCAGT
GATTGACGGTGTTCTGCTGTCGCCGGGAATGGAATCTTGTCTGGAATAGG
GGGACATTTCGATCTTTTTGGGCATCCACAAGGAGCGGTTTCGGTTTTAG
AAGCATCGGCCTCCCGTTCGACTACCTCTTCTGGTTGGTTGTTGGTATTT
ATACTGGATACCGTTCTCGGGAAGCTTTCTTGAATAATGTTCATACGTTT
CAGTGCTGTCTGTGACAGATATATACATTATTCACTTTGTCACAGATATA
TAACACTTCATTGGTTTTTCCGGATGGGCGCTCTATAGTAACAAGAAGAG
CACCTCTAATTTCCAGGGCTTGATTGTTGACCCCTCTGAGTCTTTGTTTA
GTTTGCAGCAACCATGAACGGGCACCCTCGATCCGGTCGAGGAATGCGCT
TCCTGCTGTGCACGTCTGGGCTCCTGTATCGGCGATAGAATCTATGACAG
ATGGTGTTGGTCGGTTGGGCCAGCGTTTGTTTGGATGGACTTTTTGATAG
GCTTCTTTGTTCATGGTGAAAGTGACGTTCAGAATGGGTGGTGGCTCGGG
TCTGGTTTCCCCTTCTAGTCATAAGGGTTCCGTTTGGATATGTGATAGGA
TAAGTGGTGGCTCGTCCGTGATTGAGGCGGAGGTTGCGGAGGAAGAACTA
GATCTGCATGCTGATGCGAAGTGATTTGGTTTGCCACATTTTCGACAGTT
CTTTTGCCAAGCGGGGCATGAAGATCGTCCCTTTCGGTGGAGTTGTTGAC
CACATCCTGCACAACTCTTGGACTTCTGGGGATCGGATATAGGGTTTCTC
TTGTTATCACGGCGGTAAAATGGCTGATTCGTTATCGGTGCAACCTCACT
CAAAGGACGGAGGTGGGTTGATGCTCTCTCAGTTGATTCAAGGGCGAGTA
AACGAGTAGTAACGAGGTCGAGTGTTTTCAAAACCTCCATTTCTGACAAG
ACTTTACTCTGGTGGGCAGGGTTTCTAAGTCCTGCAATTACTTGAGATTT
AACCATGTCTTCAGAATAAGACACGATACATGCATCTTGTGCACACGAGC
CCTTACCATTAAAAGCGCATAGCATGGCTTGGGCCTTCAACCTTGATATA
AAGTTTGTAACACTCTCGCAGTCAGATTGACGTAATGTGAAGAATTGTTG
ACGGTACACTTCAGGGTGGACGGCTTTGACGGAAACAGATTTTATATAAT
CTAAGAGTTCGTCTTCGGTAGCATTGTTCAGCACGTCCGGTCCAACAAAA
TTAAAAAGCATTTCATTTACCTTTGTGGAGCATGCTGACCTTAGTTCATT
ACGGATTTCTGCTTCCAATGTAAGCGATGCCATTTGCTTATAACGGGTCC
ACGCGTCTCGGAATATGATCCATCGATTGTCAGTACAGTCGGCATCGATG
GTAGGGCGTTCGAGCTTTGCACGAAGCGGGCGATTTTGCTGAGGTATCGG
GGCGGGGGTGTCTGGCGGTGCGATGATGTGTGACATCAGGGCGGTCATCC
TTTCCTGCATTTCCATTTGTTGTCTTTGCATTTGAAGCATCATCTGGAAA
GCGTCTCCACTTGTAGGCGGTTGGGGCGTTTGCGAAGGCGGGATATCTCC
GTTGTTTTTATTATGGGTCATAATGGCGATTCGTCCACGG Run BLAST on NCBI protein sequence of TCONS_00070313-protein >TCONS_00070313-protein ID=TCONS_00070313-protein|Name=TCONS_00070313-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp
RGRIAIMTHNKNNGDIPPSQTPQPPTSGDAFQMMLQMQRQQMEMQERMTA
LMSHIIAPPDTPAPIPQQNRPLRAKLERPTIDADCTDNRWIIFRDAWTRY
KQMASLTLEAEIRNELRSACSTKVNEMLFNFVGPDVLNNATEDELLDYIK
SVSVKAVHPEVYRQQFFTLRQSDCESVTNFISRLKAQAMLCAFNGKGSCA
QDACIVSYSEDMVKSQVIAGLRNPAHQSKVLSEMEVLKTLDLVTTRLLAL
ESTERASTHLRPLSEVAPITNQPFYRRDNKRNPISDPQKSKSCAGCGQQL
HRKGRSSCPAWQKNCRKCGKPNHFASACRSSSSSATSASITDEPPLILSH
IQTEPL Run BLAST on NCBI transcript from alignment at scaffold_52:73930..75619 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070313 ID=TCONS_00070313|Name=TCONS_00070313|organism=Clytia hemisphaerica|type=transcript|length=1690bp|location=Sequence derived from alignment at scaffold_52:73930..75619 (Clytia hemisphaerica)
CCGTGGACGAATCGCCATTATGACCCATAATAAAAACAACGGAGATATCC
CGCCTTCGCAAACGCCCCAACCGCCTACAAGTGGAGACGCTTTCCAGATG
ATGCTTCAAATGCAAAGACAACAAATGGAAATGCAGGAAAGGATGACCGC
CCTGATGTCACACATCATCGCACCGCCAGACACCCCCGCCCCGATACCTC
AGCAAAATCGCCCGCTTCGTGCAAAGCTCGAACGCCCTACCATCGATGCC
GACTGTACTGACAATCGATGGATCATATTCCGAGACGCGTGGACCCGTTA
TAAGCAAATGGCATCGCTTACATTGGAAGCAGAAATCCGTAATGAACTAA
GGTCAGCATGCTCCACAAAGGTAAATGAAATGCTTTTTAATTTTGTTGGA
CCGGACGTGCTGAACAATGCTACCGAAGACGAACTCTTAGATTATATAAA
ATCTGTTTCCGTCAAAGCCGTCCACCCTGAAGTGTACCGTCAACAATTCT
TCACATTACGTCAATCTGACTGCGAGAGTGTTACAAACTTTATATCAAGG
TTGAAGGCCCAAGCCATGCTATGCGCTTTTAATGGTAAGGGCTCGTGTGC
ACAAGATGCATGTATCGTGTCTTATTCTGAAGACATGGTTAAATCTCAAG
TAATTGCAGGACTTAGAAACCCTGCCCACCAGAGTAAAGTCTTGTCAGAA
ATGGAGGTTTTGAAAACACTCGACCTCGTTACTACTCGTTTACTCGCCCT
TGAATCAACTGAGAGAGCATCAACCCACCTCCGTCCTTTGAGTGAGGTTG
CACCGATAACGAATCAGCCATTTTACCGCCGTGATAACAAGAGAAACCCT
ATATCCGATCCCCAGAAGTCCAAGAGTTGTGCAGGATGTGGTCAACAACT
CCACCGAAAGGGACGATCTTCATGCCCCGCTTGGCAAAAGAACTGTCGAA
AATGTGGCAAACCAAATCACTTCGCATCAGCATGCAGATCTAGTTCTTCC
TCCGCAACCTCCGCCTCAATCACGGACGAGCCACCACTTATCCTATCACA
TATCCAAACGGAACCCTTATGACTAGAAGGGGAAACCAGACCCGAGCCAC
CACCCATTCTGAACGTCACTTTCACCATGAACAAAGAAGCCTATCAAAAA
GTCCATCCAAACAAACGCTGGCCCAACCGACCAACACCATCTGTCATAGA
TTCTATCGCCGATACAGGAGCCCAGACGTGCACAGCAGGAAGCGCATTCC
TCGACCGGATCGAGGGTGCCCGTTCATGGTTGCTGCAAACTAAACAAAGA
CTCAGAGGGGTCAACAATCAAGCCCTGGAAATTAGAGGTGCTCTTCTTGT
TACTATAGAGCGCCCATCCGGAAAAACCAATGAAGTGTTATATATCTGTG
ACAAAGTGAATAATGTATATATCTGTCACAGACAGCACTGAAACGTATGA
ACATTATTCAAGAAAGCTTCCCGAGAACGGTATCCAGTATAAATACCAAC
AACCAACCAGAAGAGGTAGTCGAACGGGAGGCCGATGCTTCTAAAACCGA
AACCGCTCCTTGTGGATGCCCAAAAAGATCGAAATGTCCCCCTATTCCAG
ACAAGATTCCATTCCCGGCGACAGCAGAACACCGTCAATCACTGGAGCAC
TGGATAAAAGATCGATACGCCAGTAGCGCTTTTAACATTT Coding sequence (CDS) from alignment at scaffold_52:73930..75619 >TCONS_00070313 ID=TCONS_00070313|Name=TCONS_00070313|organism=Clytia hemisphaerica|type=CDS|length=1071bp|location=Sequence derived from alignment at scaffold_52:73930..75619 (Clytia hemisphaerica)
CGTGGACGAATCGCCATTATGACCCATAATAAAAACAACGGAGATATCCC
GCCTTCGCAAACGCCCCAACCGCCTACAAGTGGAGACGCTTTCCAGATGA
TGCTTCAAATGCAAAGACAACAAATGGAAATGCAGGAAAGGATGACCGCC
CTGATGTCACACATCATCGCACCGCCAGACACCCCCGCCCCGATACCTCA
GCAAAATCGCCCGCTTCGTGCAAAGCTCGAACGCCCTACCATCGATGCCG
ACTGTACTGACAATCGATGGATCATATTCCGAGACGCGTGGACCCGTTAT
AAGCAAATGGCATCGCTTACATTGGAAGCAGAAATCCGTAATGAACTAAG
GTCAGCATGCTCCACAAAGGTAAATGAAATGCTTTTTAATTTTGTTGGAC
CGGACGTGCTGAACAATGCTACCGAAGACGAACTCTTAGATTATATAAAA
TCTGTTTCCGTCAAAGCCGTCCACCCTGAAGTGTACCGTCAACAATTCTT
CACATTACGTCAATCTGACTGCGAGAGTGTTACAAACTTTATATCAAGGT
TGAAGGCCCAAGCCATGCTATGCGCTTTTAATGGTAAGGGCTCGTGTGCA
CAAGATGCATGTATCGTGTCTTATTCTGAAGACATGGTTAAATCTCAAGT
AATTGCAGGACTTAGAAACCCTGCCCACCAGAGTAAAGTCTTGTCAGAAA
TGGAGGTTTTGAAAACACTCGACCTCGTTACTACTCGTTTACTCGCCCTT
GAATCAACTGAGAGAGCATCAACCCACCTCCGTCCTTTGAGTGAGGTTGC
ACCGATAACGAATCAGCCATTTTACCGCCGTGATAACAAGAGAAACCCTA
TATCCGATCCCCAGAAGTCCAAGAGTTGTGCAGGATGTGGTCAACAACTC
CACCGAAAGGGACGATCTTCATGCCCCGCTTGGCAAAAGAACTGTCGAAA
ATGTGGCAAACCAAATCACTTCGCATCAGCATGCAGATCTAGTTCTTCCT
CCGCAACCTCCGCCTCAATCACGGACGAGCCACCACTTATCCTATCACAT
ATCCAAACGGAACCCTTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070313-exon-scaffold_52-1491911889:73930..75619 | TCONS_00070313-exon-scaffold_52-1491911889:73930..75619 | Clytia hemisphaerica | exon |
| TCONS_00070313-exon-scaffold_52-1510915933:73930..75619 | TCONS_00070313-exon-scaffold_52-1510915933:73930..75619 | Clytia hemisphaerica | exon |
| TCONS_00070313-exon-scaffold_52-1575043694:73930..75619 | TCONS_00070313-exon-scaffold_52-1575043694:73930..75619 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_52 | supercontig | scaffold_52:73930..75619 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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