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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070305 ID=TCONS_00070305|Name=TCONS_00070305|organism=Clytia hemisphaerica|type=transcript|length=855bp
CGCAATTAGAGTTTTACCCGCAACCATCTGGATAAATTCAATCAACCATC
TGGGTAGAAGataaatttgattaaatttcgaCTTCTACCACCACTTGACA
GTAGAAAATTGTCATAACTGGTTCTCTTAAAAACGTCAGATAGTAAAGTT
TACAAAtggagattttgattttttcattgcTTTTTGTTGGGAGTTTTGCA
ACCATTTTAGcTTCTTTGGGGTGTGATAATGATATCACGGAACAACAAGC
AAGGCGTGGTGTAAGTGCCGCCCTCGCTAAGTCACGTGATTTGGGCGTGA
AAATGTGTATTGGGGTGGTCGATGCTGgagctaatttgaaatattttgtg
agGATGGATGACAGCTTACTGGGAAGCATCGACATCGCAATTAAAAAAGC
AAAGACTGCTCAAATGTAGCTACGGAGGAGTTGGGAAGACAGTCGCAGCC
TGGTCAACCTTTGTATGGGATAGAACAAACGAACGGTGGTCTGGTCACCT
TTGGAGGAGGACTTCCAATCAAATGTTCACCTGATGGTCACGTGATCGGA
GCAATTGGAGTTGCAGGAGATTCGATAGAAAATGATATCGCAGTTGCCAA
AGTTGGAGTAGACGACATTTGTAAGATGATCAAAGGAGACAACCATTAAA
CAAAGCATCTACCGGAAGGAAGGAAAACacctttttgatattttgatttt
tgagggcTCCCATTTTTCAGGGTTCCATAATTCATGAACTATATTATATC
TTTAACTCGAAtattccataactcgaataattgctaaagtctgtccagat
ataattggcagtggaaacaagaatgcctgtaacttttgatagtcaaatat
aatta Run BLAST on NCBI transcript from alignment at scaffold_52:153326..158154- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070305 ID=TCONS_00070305|Name=TCONS_00070305|organism=Clytia hemisphaerica|type=transcript|length=4829bp|location=Sequence derived from alignment at scaffold_52:153326..158154- (Clytia hemisphaerica)
CGCAATTAGAGTTTTACCCGCAACCATCTGGATAAATTCAATCAACCATC
TGGGTAGAAGATAAATTTGATTAAATTTCGACTTCTACCACCACTTGACA
GTAGAAAATTGTCATAACTGGTTCTCTTAAAAACGTCAGATAGTAAAGTT
TACAAATGGAGATTTTGATTTTTTCATTGCTTTTTGTTGGGAGTTTTGCA
ACCATTTTAGGTATGTGTAGGTGTTTTAAACACACCTCGCAGCTCCGGGG
AAACTTCTTTCCACAATGGGGGTGAAAAATCCATAGCGAAATCCAAATAG
GGATATAAATTCTATTAATCTCAGGTCATAATATCCAGTGGGGATGATTT
TGGAGTGCAATTTTTTTGAAACGAAGTCTATTTTAAATTGTTGGAAACTT
TTTCTACAATCTCGGTCAAAATATATTGGGAATTTTGGTTAATTCCTCGT
TTTCAGCAATTTAAATGTCGGGTGAAAAAGTCACTTTTGGGCAAATTAAT
AAATTTATTCTAATATTTCAATTAGGGAGGGGTTTATAGACTTCCAGGCT
ATATTCTGAGCCCTATTGGACAATAAGAAAGCCGCGGCTGGAATGATGAG
GCTATTATTTTTGTCGTTAATGGATGTTCTATCTGTGTCTCCGTGATTTA
TAAGAACTAAATCTAAGTTAGCAAAATCTTCAACCTGAAAAGTGTTTATA
ATATTCAATTAAAGAACAAATACTTTTCAAGTCTTAGATTTTTCTCACTG
CCCTCTCTAATTAGCTTGTTCGAAGTATATTCTTATAAATTCCAGATAAA
ATCTTAAAGATTTAGGACCAAATAACGCACATTTTAATACTAATTTAGAA
CTAATTTTCAAATGTTAAACTTTGAATGCTTGCCGTCACCTCAATACTGT
TGATTTTCGAATGAAGTTTTCAAAGAATACTGCTTGAATATTGATTTTTT
AATATCAGTAAGAATTTTTCAAAATAATCAGGAAGGCACTTCGAGGCACT
TAATGTTCTTCAAGTTCTTAAAGCACTGACATTCTTAGCTTGGATATCCA
AGCTCAAAATTTAAGAAAAAACAAAATTTACCTCAACATACAAAGTTCTT
AAATTATAGAGCTTGGTCTCCCTAGAGAATGAAAGTGCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCATAAAAAAGTTTGCATGCATTATCATGACCAACCATG
TTTTCTTGGAAAATGAACTTGCCTCTGTTTTCTTCTTTTTCATGTTTTCA
TGTAACAGAAAGCCTTATCTTCACTAGCAACTGGAGGACTATCCTATTTT
TGCTTTAGAATTGCTCAACGCCGTGTAGATTGGCCCTTACGGTTTTAACG
AAGTGAGCGCAAGCAAGCGGACTGCATTCTCTTAAAGAGAATGCAAATCG
CTCTAGGGAGACCAGGCTGTAAACCAGAACATAAAATATCAAAAACTAGA
CTGTGAAATAGTTTACAGCCTGGATATCCAAGCTATGACATTCTGTTCGC
TCTAATATTTTTAAACCAATAGTCATTTCTTTTACTTTGATATTATGAAT
GCGTGAATTATCAAGAGATTTGTATATATGAGCAAAATTACGTCTTACGA
GGGAGTTTGTTGGAAGTGAAATTAAATTGACAATGGAAATTTTCACTGAA
CCATAAAATAATTCGCTCTTTACAACATAGATAGAACAACAGAAATCCAG
CCCTACTCATTCCAATCGCGGCTTTCTTATACTATGATTGGACCATTCTT
GGACTTTTAGTTCCTCAGATCCTAAAGGTCCTAAGGTAAGCAGATCCTCT
CTGCCAACATTTTCCCTTCATTTCTTCTAATATACTCATTAGTATAACTC
ACTAGTGTCCGGGGTGTGAACTCACTAGTGTCCGGGGTGTGGTGAAGTTT
CAACTAATTCTACCTGACTAACTCCGTTGCTTTCAACTTTTGAGCCCCCT
CCCTGAGATGCTAAAATCTTCCAAACCTTTTTCCAAGCTAGAAAAAGAAG
AATCTTAAAGATTAGCATCGTGATTGGGATGACGGATAGAATCTAGCGTT
TTCTTTGTTTCAACGTGGTACATTTTACATCCACAAACCATTGAGTTTAA
AGCCCGAAGGGCTAGAGTACAATCTATAACCTTTCTCAGGCAAGAAAAAG
TGAAGCCTTAAAAAATGCACCATATTTTTGACGACAGATTGAATCTAGCA
ATTCCTTTGTTTACGATTGAAATTTTTTCGAAATTTAGCGGTAAATTTTA
GCTTCAATCTGTCATTTGTGTAAAAACCAGGCGAGCCGCTCAAGACCACG
TAACTTTGGTAGGATTTGTTGGCTTCAAATCCTACCAAAGAGATTGACTT
CTAGCCCTTTGGGCTTATACTTCATTGCCGCAAACACTCTGGTCACGCAT
TTTGGATGAGGAATAAGTGGTTTCAACTTCGATCAAAGGATGAACCTTTA
AGCTCGATACTTTCACTCACTGCCTAATTTTCAATTATCAGAATTCTTAT
CCCCTCAGAGAAATCCAAAACGCTTTAATACTCGGTTTGCAAAATTATAT
CAATGCAGTCAAAAAATGTGATTACTCCAAAAAGTTTTTTCATTTCATTC
TTTAACCTGCTTCAACACGTGATTTTATTCCCATGTTACTTTGCTTTACA
ACTTACAGCTGATCACTTTATTAGTGTCAATAAATTTGAACCAATCAGAA
ATAAATGTCATGTAACAAGCACATAACAATTTTGAACAAAAGCATGATTT
GTCTTCAGATTTTAATTTTGCAACCTGTGTATTGAGATTAAGGAATACGT
ATAATAATATTCAACTTGAATGGAGTCTCTTTTGTTTTTTTCAGCTTCTT
TGGGGTGTGATAATGATATCACGGAACAACAAGCAAGGCGTGGTGTAAGT
GCCGCCCTCGCTAAGTCACGTGATTTGGGCGTGAAAATGTGTATTGGGGT
GGTCGATGCTGGAGCTAATTTGAAATATTTTGTGAGGATGGATGACAGCT
TACTGGGTAAGTTCTAGATGGATATAGATTTTTTATTTTTTTTTATTGTC
TCGTAAAGTACAAGTACTTTTTAGATAAGCTAAAATTCTATTCAACCTCA
GCCCTGACCCGAAAATTGGCCTCATTTCAGATAATGGTAATCCAATTTCC
AATTTTTCAATTAGGCGAGACCAATTTGATTAGTTGTTTTACGGGCCCGA
CCGACCCTGAAATCTCAAAAATCGAAAAAAAATTGATATATTTTGGTAGT
ACATTTTTGTTTTCATTGCTTAGCAGATTGCCAAATTTGCAAAATTTTGG
TAGTTTTTCCAAGGTTCTGAGAATTTTATGTTCAATTTTTCATTTTATCC
ATGAATTCGAGCTTTTTGCGTCTTTTTATTTTCTATTTCGCATTTTTGTC
AAGATGTAGTAGTTTTTGCTGCCTTTCAAGAATATTTTATCGGGTCAAGT
TCTACTATTATTTTCATTTTTTCGCCGACCGACCGACCGATCCTCTTTTT
TTGGGTAGCTTGACCCGTAAAACAACAAATTAAATTGGTCTCGCCTTAGT
TAGTAATCAATTTTAGATATTATCCAGTAATAATTTAAAGAAATATAAGA
TTTCCATTGATACGTTTGTCTTGGATTTAAATTGACCAATTGTTTTGTAA
ACAGATCGATAATACTGGCTAATTTAGGTGGACAATATTTATAAACATAC
GGGAAAATCGGGTCCAGGCTCAACATAGTCAGCAAAATATAATTTTCAGT
CTTAATTTATGCTTATTTATATGTGCTTAGAGTAGACTTCGATTTGTTCA
TTTTCTTTGGGCTCACGAAAATATCGAATTTTTTAGTTGAAATATTAATT
TGGCTCAAAGAATGAAAGATTTCTTTGTGATTTGGCACCGCAGGCGAAAA
TCTTTGGTCTAGGAAAACTCAAACAGCTTTAAAATTAACCTTAAAAAGAT
CAGCGTTTTAGAAAAGCTGCACAATTTTTTTGCCTTTCAGCTTGGAGGTA
TGCTCAGTATTATACTTATTTTTACCGAATTTTAGCCTAAGTATGCTTAT
AAAAGTTATGCTTATAAAAATGTACATTGGCGAGGCTTTTGAAGGCTTTT
GGGTATAAAATACCATTTTATACAAATCTTTATATACATTCTTTAGGAAG
CATCGACATCGCAATTAAAAAAGCAAAGACTGCTCAAATGTAGCTACGGA
GGAGTTGGGAAGACAGTCGCAGCCTGGTCAACCTTTGTATGGGATAGAAC
AAACGAACGGTGGTCTGGTCACCTTTGGAGGAGGACTTCCAATCAAATGT
TCACCTGATGGTCACGTGATCGGAGCAATTGGAGTTGCAGGAGATTCGAT
AGAAAATGATATCGCAGTTGCCAAAGTTGGAGTAGACGACATTTGTAAGA
TGATCAAAGGAGACAACCATTAAACAAAGCATCTACCGGAAGGAAGGAAA
ACACCTTTTTGATATTTTGATTTTTGAGGGCTCCCATTTTTCAGGGTTCC
ATAATTCATGAACTATATTATATCTTTAACTCGAATATTCCATAACTCGA
ATAATTGCTAAAGTCTGTCCAGATATAATTGGCAGTGGAAACAAGAATGC
CTGTAACTTTTGATAGTCAAATATAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070305-exon-scaffold_52-1575043694:157945..158154 | TCONS_00070305-exon-scaffold_52-1575043694:157945..158154 | Clytia hemisphaerica | exon |
| TCONS_00070305-exon-scaffold_52-1575043694:154949..155110 | TCONS_00070305-exon-scaffold_52-1575043694:154949..155110 | Clytia hemisphaerica | exon |
| TCONS_00070305-exon-scaffold_52-1575043694:153326..153808 | TCONS_00070305-exon-scaffold_52-1575043694:153326..153808 | Clytia hemisphaerica | exon |
| TCONS_00070305-exon-scaffold_52-1510915933:157945..158154 | TCONS_00070305-exon-scaffold_52-1510915933:157945..158154 | Clytia hemisphaerica | exon |
| TCONS_00070305-exon-scaffold_52-1510915933:154949..155110 | TCONS_00070305-exon-scaffold_52-1510915933:154949..155110 | Clytia hemisphaerica | exon |
| TCONS_00070305-exon-scaffold_52-1510915933:153326..153808 | TCONS_00070305-exon-scaffold_52-1510915933:153326..153808 | Clytia hemisphaerica | exon |
| TCONS_00070305-exon-scaffold_52-1491911889:157945..158154 | TCONS_00070305-exon-scaffold_52-1491911889:157945..158154 | Clytia hemisphaerica | exon |
| TCONS_00070305-exon-scaffold_52-1491911889:154949..155110 | TCONS_00070305-exon-scaffold_52-1491911889:154949..155110 | Clytia hemisphaerica | exon |
| TCONS_00070305-exon-scaffold_52-1491911889:153326..153808 | TCONS_00070305-exon-scaffold_52-1491911889:153326..153808 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_52 | supercontig | scaffold_52:153326..158154 - |
Blast
The following BLAST results are available for this feature:
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