TCONS_00070293 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070293
Unique NameTCONS_00070293
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length963

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070293 ID=TCONS_00070293|Name=TCONS_00070293|organism=Clytia hemisphaerica|type=transcript|length=963bp
CGTGTTAAAAGAAAGTGACCTGTAGTTTCACAATGCAGATATTTATAAAG
TTAATAGCTGGTATAACTAAAACATTTAATGTTGAGCCAAACGACAGAAT
TCACACTGTCAAGGGTTGGATAACAGATGTGATTGGTGCCCCAATTGATC
AGCAGCGATTGATATTTTGTGGCAAGCTATTGGAGGATCATAAGGCAATA
CGAGATTATAAAATTTATGAGGACTCCACCCTGCACATGGTACTTCGTTT
GAGAGGCATGATATCAAATTTCTCTGAATTTGATGAAAAGGATCCACTTA
ATGCGTTTTTGATGCAAGGAGATGTTACCGGAGTTGAAATCTCAGAACag
cttttaaaagaaaagagaaaaacatgtGATTTTGGttctaaaatatcaaa
attgaaacTGCATTATACTggtgatgaaattttgagtGATGAGCAAAGAA
GAAAGTTGATCAATCTAGCTGACTTTACGCATTTCTTGCATCAAGTGAAA
AAGAAGTCGGAAACTGTTTTTCAGGATATAAAAATCATCATACCCAATGG
ACTTTTGAATCAAATCATTGAAAGTGTTGGGGTTGAAGATACCTTGAAAA
GTCACCACACAGAGACTTCTTGTAatacaaaatttgttttgagaCGCACA
TCTCCGACACAAGGATGTTTGCCTTGGCATGTTGATGGAGTTTATTCAAA
TTCTGTTGTCCAATCCACTTTAAATGATGATAAAAGTTTCACTGGTGGAA
AATTATGTTATTTCATTGATGACACAGGCTTGTTTATCCTCGTCGTCCTG
CTGGAACTTTATCTGTGCATCAGAAAGAAATCATGTTGTCACAAAGATTG
TTAAGTGGTGTGCGATATGTTCTCTTTGTGGTTGACTGCAGGAATCATTT
AAGTGACTCTGAAGAAAATATTGTGACATTGGACCAGAAAATGTTGGATA
AAATGAATGCTGC
Run BLAST on NCBI

transcript from alignment at scaffold_52:94621..95920+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070293 ID=TCONS_00070293|Name=TCONS_00070293|organism=Clytia hemisphaerica|type=transcript|length=1300bp|location=Sequence derived from alignment at scaffold_52:94621..95920+ (Clytia hemisphaerica)
CGTGTTAAAAGAAAGTGACCTGTAGTGTAATTGCATTTTGAAAGAATAGT
TTATTTTGGTCTTTTTATACTTTCAGAAGAGAACATTTTGTTCTGTGCAT
CAAACAGGAGATCTAAATCAAGTCAGTGTTAGATTTAAGTCACCAAGGGC
TTATAAACTTCTTAAGTTCCTATGcaataataaaatcttattttctagAG
GTACTTGAAATGTTTTGAatcataaattttcagaaaaagtaacATCAATC
TCCTTTCGAGTAATAAAGTTTGGCTTTATAAAAATGTTTAATGTCTTTGT
AATCTCAACCTATTTTACATCTTTACCCATTTAATactaaaacattttct
gcttACTATTTAGTTCACAATGCAGATATTTATAAAGTTAATAGCTGGTA
TAACTAAAACATTTAATGTTGAGCCAAACGACAGAATTCACACTGTCAAG
GGTTGGATAACAGATGTGATTGGTGCCCCAATTGATCAGCAGCGATTGAT
ATTTTGTGGCAAGCTATTGGAGGATCATAAGGCAATACGAGATTATAAAA
TTTATGAGGACTCCACCCTGCACATGGTACTTCGTTTGAGAGGCATGATA
TCAAATTTCTCTGAATTTGATGAAAAGGATCCACTTAATGCGTTTTTGAT
GCAAGGAGATGTTACCGGAGTTGAAATCTCAGAACagcttttaaaagaaa
agagaaaaacatgtGATTTTGGttctaaaatatcaaaattgaaacTGCAT
TATACTggtgatgaaattttgagtGATGAGCAAAGAAGAAAGTTGATCAA
TCTAGCTGACTTTACGCATTTCTTGCATCAAGTGAAAAAGAAGTCGGAAA
CTGTTTTTCAGGATATAAAAATCATCATACCCAATGGACTTTTGAATCAA
ATCATTGAAAGTGTTGGGGTTGAAGATACCTTGAAAAGTCACCACACAGA
GACTTCTTGTAatacaaaatttgttttgagaCGCACATCTCCGACACAAG
GATGTTTGCCTTGGCATGTTGATGGAGTTTATTCAAATTCTGTTGTCCAA
TCCACTTTAAATGATGATAAAAGTTTCACTGGTGGAAAATTATGTTATTT
CATTGATGACACAGGCTTGTTTATCCTCGTCGTCCTGCTGGAACTTTATC
TGTGCATCAGAAAGAAATCATGTTGTCACAAAGATTGTTAAGTGGTGTGC
GATATGTTCTCTTTGTGGTTGACTGCAGGAATCATTTAAGTGACTCTGAA
GAAAATATTGTGACATTGGACCAGAAAATGTTGGATAAAATGAATGCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043773XLOC_043773Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070293-exon-scaffold_52-1491911889:94621..94646TCONS_00070293-exon-scaffold_52-1491911889:94621..94646Clytia hemisphaericaexon
TCONS_00070293-exon-scaffold_52-1510915933:94621..94646TCONS_00070293-exon-scaffold_52-1510915933:94621..94646Clytia hemisphaericaexon
TCONS_00070293-exon-scaffold_52-1575043694:94621..94646TCONS_00070293-exon-scaffold_52-1575043694:94621..94646Clytia hemisphaericaexon
TCONS_00070293-exon-scaffold_52-1491911889:94984..95920TCONS_00070293-exon-scaffold_52-1491911889:94984..95920Clytia hemisphaericaexon
TCONS_00070293-exon-scaffold_52-1510915933:94984..95920TCONS_00070293-exon-scaffold_52-1510915933:94984..95920Clytia hemisphaericaexon
TCONS_00070293-exon-scaffold_52-1575043694:94984..95920TCONS_00070293-exon-scaffold_52-1575043694:94984..95920Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:94621..95920 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.357996	0	0.110169	0	0.690231	0	1.16691	1.45364	1.49853	0.803088	1.03937	1.87408	2.33856	2.85157	4.54792	3.97026	9.85418e-07	0.595089	2.0026	2.31025	2.01342	2.00648	1.20293	2.32654	0	0.791924	0.551261	0.459256	0.351515	0.803668
Blast
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BLAST of TCONS_00070293 vs. Swiss-Prot (Human)
Match: RL40 (Ubiquitin-60S ribosomal protein L40 OS=Homo sapiens GN=UBA52 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 8.648e-22
Identity = 45/77 (58.44%), Postives = 53/77 (68.83%), Query Frame = 3 
Query:   33 MQIFIKLIAGITKTFNVEPNDRIHTVKGWITDVIGAPIDQQRLIFCGKLLEDHKAIRDYKIYEDSTLHMVLRLRGMI 263
            MQIF+K + G T T  VEP+D I  VK  I D  G P DQQRLIF GK LED + + DY I ++STLH+VLRLRG I
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77
The following BLAST results are available for this feature:
BLAST of TCONS_00070293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL408.648e-2258.44Ubiquitin-60S ribosomal protein L40 OS=Homo sapien... [more]
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