Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070288 ID=TCONS_00070288|Name=TCONS_00070288|organism=Clytia hemisphaerica|type=transcript|length=1325bpRun BLAST on NCBI protein sequence of TCONS_00070288-protein >TCONS_00070288-protein ID=TCONS_00070288-protein|Name=TCONS_00070288-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp IGFEGSANKIGIGIIEDGNVLSNVRHTYITPPGKGFLPRDTAKHHQEHILRun BLAST on NCBI transcript from alignment at scaffold_52:25070..34122+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070288 ID=TCONS_00070288|Name=TCONS_00070288|organism=Clytia hemisphaerica|type=transcript|length=9053bp|location=Sequence derived from alignment at scaffold_52:25070..34122+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_52:25070..34122+ >TCONS_00070288 ID=TCONS_00070288|Name=TCONS_00070288|organism=Clytia hemisphaerica|type=CDS|length=13944bp|location=Sequence derived from alignment at scaffold_52:25070..34122+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070288 vs. Swiss-Prot (Human)
Match: OSGEP (Probable tRNA N6-adenosine threonylcarbamoyltransferase OS=Homo sapiens GN=OSGEP PE=1 SV=1) HSP 1 Score: 561.607 bits (1446), Expect = 0.000e+0 Identity = 255/331 (77.04%), Postives = 292/331 (88.22%), Query Frame = 1 Query: 1 IGFEGSANKIGIGIIEDGNVLSNVRHTYITPPGKGFLPRDTAKHHQEHILDILQKALEDANIKPEQIDCVCFTKGPGMGAPLVSTAVVARTVAQLWDKPLVGVNHCVGHIEMGRLVTGAQNPVVLYVSGGNTQVIAYSQQKYRIFGETIDIAIGNCLDRFARVLKLSNDPSPGYNIEQMAKKGKKYIELPYTVKGMDISFSGILSFIEAAADKMMKRGECTAEDLCFSLQETLFAMLIEITERAMAHCGSNEVLIVGGVGCNKRLQEMMGKMAEERNGKLFATDERFCIDNGVMIAQAGWEMFRSGHVTPMDDTWCTQRYRTDEVDVLWRD 993 +GFEGSANKIG+G++ DG VL+N R TY+TPPG GFLP DTA+HH+ ILD+LQ+AL ++ + + IDC+ +TKGPGMGAPLVS AVVARTVAQLW+KPLVGVNHC+GHIEMGRL+TGA +P VLYVSGGNTQVIAYS+ +YRIFGETIDIA+GNCLDRFARVLK+SNDPSPGYNIEQMAK+GKK +ELPYTVKGMD+SFSGILSFIE A +M+ GECT EDLCFSLQET+FAML+EITERAMAHCGS E LIVGGVGCN RLQEMM M +ER +LFATDERFCIDNG MIAQAGWEMFR+GH TP+ D+ TQRYRTDEV+V WRD Sbjct: 5 LGFEGSANKIGVGVVRDGKVLANPRRTYVTPPGTGFLPGDTARHHRAVILDLLQEALTESGLTSQDIDCIAYTKGPGMGAPLVSVAVVARTVAQLWNKPLVGVNHCIGHIEMGRLITGATSPTVLYVSGGNTQVIAYSEHRYRIFGETIDIAVGNCLDRFARVLKISNDPSPGYNIEQMAKRGKKLVELPYTVKGMDVSFSGILSFIEDVAHRMLATGECTPEDLCFSLQETVFAMLVEITERAMAHCGSQEALIVGGVGCNVRLQEMMATMCQERGARLFATDERFCIDNGAMIAQAGWEMFRAGHRTPLSDSGVTQRYRTDEVEVTWRD 335 The following BLAST results are available for this feature:
BLAST of TCONS_00070288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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