TCONS_00070279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070279
Unique NameTCONS_00070279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length993

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070279 ID=TCONS_00070279|Name=TCONS_00070279|organism=Clytia hemisphaerica|type=transcript|length=993bp
gtgaaaataaaataaagaaattagaAAGATGTTAATTATTGCATACGGAG
TGACATCTATATTACTGGTAATTGGGCTTGTGCTTGGGTTTCGATTATGG
CAAGGAAAGAAGAACCAAGTTGTTATCAACAATCCAGCCTTTGtcaattt
ccaacaaaaataTTTCCGTGTTTATTTCCTTGCATTATTAGCTGAATGGC
TACAAGGACCGTATTTATATAAATTGTATCATGATTATGGTTTTGTTGAT
CCTTTCATTGGGATTATTTATGTTTGCGGGTTTGTATCAAGTATTGTTTT
TGGTACATACACTGGTATACTTACTGACCGACTTGGTAGGAAAAAGGTGT
GCGTATTGTTTACTATTTTGTATTCAATATGCTGCTTTACAAAGCtttct
cataatttttttgtattatgTCTTGGAAGAGTACTAGGTGGAGTATCAAC
TAGTTTACTCTTTTCTGCATTTGATTCTTGGTATATGTTTGAGCATACAC
AAGCTTATCAGTTCCCTACAGAATGGATGGATGTCACTTTCTCAAAAGCT
ACCTTTTATAACAGTGTTATTGCAATCACAGCTGGCTTTATTGCTAATTT
GTTATCTGAATGGCTTCAATTTGGACCAGTTGCACCATTTTTATTTGCAA
TACCTTTTCTTGTTGTGGCTGGAGCACTGATCCAAGTCACCTGGTCTGAG
AATCATGGAAGATCTGGCCAAGCATGTAAAGGTNATTAGATAAGACCttg
ttgacagatttttttgGCAGTGTCCACTCTACAGAGATAACAAAACAGTA
TGATTTTGAACTTGAAACCGAAGAAGTCACTGTCACTGAAGACAAAACAA
ATATCAATAAACAACCTAGCAAGAAATATTCTTTTGTTTCCCAGATTCCA
ACATTGTAATATTTGGTGAACTGGATAAGCTttcttgtgaaatatttaag
aCGTTTTGTAAttcttatcattttttttttcaatgtagaacca
Run BLAST on NCBI

transcript from alignment at scaffold_52:7995..8987+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070279 ID=TCONS_00070279|Name=TCONS_00070279|organism=Clytia hemisphaerica|type=transcript|length=993bp|location=Sequence derived from alignment at scaffold_52:7995..8987+ (Clytia hemisphaerica)
gtgaaaataaaataaagaaattagaAAGATGTTAATTATTGCATACGGAG
TGACATCTATATTACTGGTAATTGGGCTTGTGCTTGGGTTTCGATTATGG
CAAGGAAAGAAGAACCAAGTTGTTATCAACAATCCAGCCTTTGtcaattt
ccaacaaaaataTTTCCGTGTTTATTTCCTTGCATTATTAGCTGAATGGC
TACAAGGACCGTATTTATATAAATTGTATCATGATTATGGTTTTGTTGAT
CCTTTCATTGGGATTATTTATGTTTGCGGGTTTGTATCAAGTATTGTTTT
TGGTACATACACTGGTATACTTACTGACCGACTTGGTAGGAAAAAGGTGT
GCGTATTGTTTACTATTTTGTATTCAATATGCTGCTTTACAAAGCtttct
cataatttttttgtattatgTCTTGGAAGAGTACTAGGTGGAGTATCAAC
TAGTTTACTCTTTTCTGCATTTGATTCTTGGTATATGTTTGAGCATACAC
AAGCTTATCAGTTCCCTACAGAATGGATGGATGTCACTTTCTCAAAAGCT
ACCTTTTATAACAGTGTTATTGCAATCACAGCTGGCTTTATTGCTAATTT
GTTATCTGAATGGCTTCAATTTGGACCAGTTGCACCATTTTTATTTGCAA
TACCTTTTCTTGTTGTGGCTGGAGCACTGATCCAAGTCACCTGGTCTGAG
AATCATGGAAGATCTGGCCAAGCATGTAAAGGTNATTAGATAAGACCttg
ttgacagatttttttgGCAGTGTCCACTCTACAGAGATAACAAAACAGTA
TGATTTTGAACTTGAAACCGAAGAAGTCACTGTCACTGAAGACAAAACAA
ATATCAATAAACAACCTAGCAAGAAATATTCTTTTGTTTCCCAGATTCCA
ACATTGTAATATTTGGTGAACTGGATAAGCTttcttgtgaaatatttaag
aCGTTTTGTAAttcttatcattttttttttcaatgtagaacca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043767XLOC_043767Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070279-exon-scaffold_52-1491911889:7995..8987TCONS_00070279-exon-scaffold_52-1491911889:7995..8987Clytia hemisphaericaexon
TCONS_00070279-exon-scaffold_52-1510915933:7995..8987TCONS_00070279-exon-scaffold_52-1510915933:7995..8987Clytia hemisphaericaexon
TCONS_00070279-exon-scaffold_52-1575043694:7995..8987TCONS_00070279-exon-scaffold_52-1575043694:7995..8987Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:7995..8987 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.89182	5.37094	4.29262	6.10507	2.15789	1.51435	1.75974	2.59332	1.51269	1.28166	0.830005	0.524801	0.948577	0.549001	2.03913	1.74865	2.42612	1.70134	0	1.52139	3.91436	2.46947	5.92426	6.30684	0.117437	0.394079	2.46829	1.49013	4.5892	5.88615
Blast
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BLAST of TCONS_00070279 vs. Swiss-Prot (Human)
Match: MFSD5 (Molybdate-anion transporter OS=Homo sapiens GN=MFSD5 PE=1 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 9.730e-62
Identity = 115/238 (48.32%), Postives = 156/238 (65.55%), Query Frame = 2 
Query:   29 MLIIAYGVTSILLVIGLVLGFRLWQGKKNQVVINNPAFVNFQQKYFRVYFLALLAEWLQGPYLYKLYHDYGFVDPFIGIIYVCGFVSSIVFGTYTGILTDRLGRKKVCVLFTILYSICCFTKLSHNFFVLCLGRVLGGVSTSLLFSAFDSWYMFEHTQAYQFPTEWMDVTFSKATFYNSVIAITAGFIANLLSEWLQFGPVAPFLFAIPFLVVAGALIQVTWSENHGRS---GQACKG 733
            ML+ AY     LL   L L     + K      +NP+F+ FQ  +++VYFLAL A+WLQ PYLYKLY  Y F++  I I+YVCG  S+++FG     L D LGRK  CVLF++ YS+CC TKLS ++FVL +GR LGG+ST+LLFSAF++WY+ EH + + FP EW+  TF++A F+N V+A+ AG  A  ++ W+  GPVAPF+ AIP L +AGAL    W EN+ R     + C G
Sbjct:    1 MLVTAYLAFVGLLASCLGLELSRCRAKPPGRACSNPSFLRFQLDFYQVYFLALAADWLQAPYLYKLYQHYYFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKNSCVLFSLTYSLCCLTKLSQDYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPAEWIPATFARAAFWNHVLAVVAGVAAEAVASWIGLGPVAPFVAAIPLLALAGALALRNWGENYDRQRAFSRTCAG 238
The following BLAST results are available for this feature:
BLAST of TCONS_00070279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MFSD59.730e-6248.32Molybdate-anion transporter OS=Homo sapiens GN=MFS... [more]
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