TCONS_00070278 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070278
Unique NameTCONS_00070278
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length622

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070278 ID=TCONS_00070278|Name=TCONS_00070278|organism=Clytia hemisphaerica|type=transcript|length=622bp
TTAGGAAAAAGTAGATATATTCTTTATACTCTTACTCTTCCCTCTATGAC
TTGACCCAATGAACTTGTTATTGTGAACTTTAGTTGTTAGTTGACTCTGC
TAGTTCCAGCTAGTAGTTTAATCAGGAAGATTCTTTTCGTATTGGAAAGA
attttcgaatttctttttgctttttagaaaaatctttcctcattagaaaa
ttgaaaattgaccaaatctAACGAGACGATGTACCATGACCAGCGAAAAG
GAATCTTTTTCAGGTGTAAAAcacataattttattttttcaccaaagCAG
AAACTATTCACCTAGGCAATCTTGCTTCAATCTTTATATAAGTTTCACTT
CAATAAGTATCTCACAAGATGggcttgaaaaatatttttgacagatttca
tATTAAATCATTAAAATTCAAATACAGCCTATaaagcaaaataattttta
taagtAAAGAATTAAGACATTCGTTTCTATATGATTCACACCATTTCTTT
TTAAGTGTTATCAAGAAGATTAGCAAGGGCTCCTTCGGCGAAGTGTCCTT
GAAGAAGCTGGACGAAGAAAAAGTCACAGTCTCAAAGGTAGTACAATTCT
GAAGATAGTGATCTTGTCACAA
Run BLAST on NCBI

transcript from alignment at scaffold_516:552465..553086

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070278 ID=TCONS_00070278|Name=TCONS_00070278|organism=Clytia hemisphaerica|type=transcript|length=622bp|location=Sequence derived from alignment at scaffold_516:552465..553086 (Clytia hemisphaerica)
TTGTGACAAGATCACTATCTTCAGAATTGTACTACCTTTGAGACTGTGAC
TTTTTCTTCGTCCAGCTTCTTCAAGGACACTTCGCCGAAGGAGCCCTTGC
TAATCTTCTTGATAACACTTAAAAAGAAATGGTGTGAATCATATAGAAAC
GAATGTCTTAATTCTTTacttataaaaattattttgctttATAGGCTGTA
TTTGAATTTTAATGATTTAATatgaaatctgtcaaaaatatttttcaagc
cCATCTTGTGAGATACTTATTGAAGTGAAACTTATATAAAGATTGAAGCA
AGATTGCCTAGGTGAATAGTTTCTGctttggtgaaaaaataaaattatgt
gTTTTACACCTGAAAAAGATTCCTTTTCGCTGGTCATGGTACATCGTCTC
GTTagatttggtcaattttcaattttctaatgaggaaagatttttctaaa
aagcaaaaagaaattcgaaaatTCTTTCCAATACGAAAAGAATCTTCCTG
ATTAAACTACTAGCTGGAACTAGCAGAGTCAACTAACAACTAAAGTTCAC
AATAACAAGTTCATTGGGTCAAGTCATAGAGGGAAGAGTAAGAGTATAAA
GAATATATCTACTTTTTCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043766XLOC_043766Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070278-exon-scaffold_516-1491911889:552465..553086TCONS_00070278-exon-scaffold_516-1491911889:552465..553086Clytia hemisphaericaexon
TCONS_00070278-exon-scaffold_516-1510915933:552465..553086TCONS_00070278-exon-scaffold_516-1510915933:552465..553086Clytia hemisphaericaexon
TCONS_00070278-exon-scaffold_516-1575043694:552465..553086TCONS_00070278-exon-scaffold_516-1575043694:552465..553086Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:552465..553086 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.773123	0.586379	0.194526	0	0.115844	0	0	0.103394	0	0	0	0	0	0.177994	0	0.15704	0	0.132194	0	0.191112	0	0	0.196988	0.0895455	0.184459	0	0	0	0.476726	0.194283
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070278 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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