TCONS_00070273 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070273
Unique NameTCONS_00070273
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length242

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070273 ID=TCONS_00070273|Name=TCONS_00070273|organism=Clytia hemisphaerica|type=transcript|length=242bp
CTTAAGCCCATCCTTGATTGAACTATATAGCCAAACATTAAAAAACTACT
CATGATCagacaaataaaaagttaaagatACCGGACTCCACACATAACTT
CTTCTCATTTTCGGACGGACAGCACGTAAATTTTACGGACAGCTTTCAAT
GTTTCATTCATAATCGAGGAATCCAATTTTAGCCATTGAAAGCAACGCTA
CgatgttttgatgtgttttcaaaatttcgatTCGGTCTTCCG
Run BLAST on NCBI

transcript from alignment at scaffold_516:489649..489890

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070273 ID=TCONS_00070273|Name=TCONS_00070273|organism=Clytia hemisphaerica|type=transcript|length=242bp|location=Sequence derived from alignment at scaffold_516:489649..489890 (Clytia hemisphaerica)
CGGAAGACCGAatcgaaattttgaaaacacatcaaaacatcGTAGCGTTG
CTTTCAATGGCTAAAATTGGATTCCTCGATTATGAATGAAACATTGAAAG
CTGTCCGTAAAATTTACGTGCTGTCCGTCCGAAAATGAGAAGAAGTTATG
TGTGGAGTCCGGTatctttaactttttatttgtctGATCATGAGTAGTTT
TTTAATGTTTGGCTATATAGTTCAATCAAGGATGGGCTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043761XLOC_043761Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070273-exon-scaffold_516-1491911889:489649..489890TCONS_00070273-exon-scaffold_516-1491911889:489649..489890Clytia hemisphaericaexon
TCONS_00070273-exon-scaffold_516-1510915933:489649..489890TCONS_00070273-exon-scaffold_516-1510915933:489649..489890Clytia hemisphaericaexon
TCONS_00070273-exon-scaffold_516-1575043694:489649..489890TCONS_00070273-exon-scaffold_516-1575043694:489649..489890Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:489649..489890 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.3228	7.21603	9.45759	12.2492	1.17457	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8.9879	6.35546	0	0	0	0	0.966727	9.52175
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070273 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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