TCONS_00070270 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070270
Unique NameTCONS_00070270
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070270 ID=TCONS_00070270|Name=TCONS_00070270|organism=Clytia hemisphaerica|type=transcript|length=363bp
ccaagcttTAATCGTTATGGTGCTCCAAGCAAAGTCGTAAGTGATAATGG
CTCAAACTTCACGTCAAATGCAACGAAAGAATTCGCAAAATCGAGAATGA
TTCGTTGGTCGTACAACATTGAGGCCGCCCCCTGGCAGGGTGGTATGTTT
GAAAGGATGATCCAATCCACGAAACGCATCTTAAAGAAGTCTCTACGTAA
AGAGATACTAACTTATAACGAACTGTTAACGTTATTGAAGAGAATCGAAA
ACATTCTAAACAACAGACCATTGACTTACGTTTACGATTCTGAAGTTGGA
GATCCACCATTAACGCCAAACCATCTCATCTACGGGCGTAAGATCGAAAC
AACAAACGTAAAN
Run BLAST on NCBI

protein sequence of TCONS_00070270-protein

>TCONS_00070270-protein ID=TCONS_00070270-protein|Name=TCONS_00070270-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
PSFNRYGAPSKVVSDNGSNFTSNATKEFAKSRMIRWSYNIEAAPWQGGMF
ERMIQSTKRILKKSLRKEILTYNELLTLLKRIENILNNRPLTYVYDSEVG
DPPLTPNHLIYGRKIETTNVX
Run BLAST on NCBI

transcript from alignment at scaffold_516:448762..449124

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070270 ID=TCONS_00070270|Name=TCONS_00070270|organism=Clytia hemisphaerica|type=transcript|length=363bp|location=Sequence derived from alignment at scaffold_516:448762..449124 (Clytia hemisphaerica)
NTTTACGTTTGTTGTTTCGATCTTACGCCCGTAGATGAGATGGTTTGGCG
TTAATGGTGGATCTCCAACTTCAGAATCGTAAACGTAAGTCAATGGTCTG
TTGTTTAGAATGTTTTCGATTCTCTTCAATAACGTTAACAGTTCGTTATA
AGTTAGTATCTCTTTACGTAGAGACTTCTTTAAGATGCGTTTCGTGGATT
GGATCATCCTTTCAAACATACCACCCTGCCAGGGGGCGGCCTCAATGTTG
TACGACCAACGAATCATTCTCGATTTTGCGAATTCTTTCGTTGCATTTGA
CGTGAAGTTTGAGCCATTATCACTTACGACTTTGCTTGGAGCACCATAAC
GATTAaagcttgg

Coding sequence (CDS) from alignment at scaffold_516:448762..449124

>TCONS_00070270 ID=TCONS_00070270|Name=TCONS_00070270|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_516:448762..449124 (Clytia hemisphaerica)
NTTTACGTTTGTTGTTTCGATCTTACGCCCGTAGATGAGATGGTTTGGCG
TTAATGGTGGATCTCCAACTTCAGAATCGTAAACGTAAGTCAATGGTCTG
TTGTTTAGAATGTTTTCGATTCTCTTCAATAACGTTAACAGTTCGTTATA
AGTTAGTATCTCTTTACGTAGAGACTTCTTTAAGATGCGTTTCGTGGATT
GGATCATCCTTTCAAACATACCACCCTGCCAGGGGGCGGCCTCAATGTTG
TACGACCAACGAATCATTCTCGATTTTGCGAATTCTTTCGTTGCATTTGA
CGTGAAGTTTGAGCCATTATCACTTACGACTTTGCTTGGAGCACCATAAC
GATTAaagcttgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043758XLOC_043758Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070270-exon-scaffold_516-1491911889:448762..449124TCONS_00070270-exon-scaffold_516-1491911889:448762..449124Clytia hemisphaericaexon
TCONS_00070270-exon-scaffold_516-1510915933:448762..449124TCONS_00070270-exon-scaffold_516-1510915933:448762..449124Clytia hemisphaericaexon
TCONS_00070270-exon-scaffold_516-1575043694:448762..449124TCONS_00070270-exon-scaffold_516-1575043694:448762..449124Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070270-proteinTCONS_00070270-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:448762..449124 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.38636	1.87309	0.341378	0.917306	4.491	0.61285	5.18024	4.70828	3.31956	2.00637	4.47227	4.89156	2.70042	0	7.10154	11.1628	5.07812	5.20367	1.27382	3.27697	2.64936	3.26712	2.46606	3.31221	2.63768	2.17331	0.954693	1.07962	2.78099	2.82341
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070270 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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