TCONS_00070269 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070269
Unique NameTCONS_00070269
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length675

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070269 ID=TCONS_00070269|Name=TCONS_00070269|organism=Clytia hemisphaerica|type=transcript|length=675bp
GAGCGGTTTCGCTGACGGCGCAATtatttgtttacattatttgccTGTTA
CCAAGTAGTCGCCGGCGAAACTAATCAAAaggtcaaaaaaattaaaaatt
acaaacaaagtCTGAAAGTCTGAAAGTGAAATTGATTGATAAATACAGTA
TATGTGAAAGTTTTGTAGTCACTCTGGTATGAAATAAGAATATCAAGTAT
GTAATTAACCACATTACATCATTGAAGTTATATGACTGGAAGCTCGAAGA
CATGTCAGAAGGTAAAAGCAATTTATTATgaaatttattatatatttcgA
TGTATTTCGATATTTAAGAAACATCAGGCCCAGGAATAAATTTACCTACC
AAAAGCAAACGAAAGCTAAGGTGCTGACGCTTCCTACCCTATCCTGTGTC
ATGGGTTTTTCCTGTGCCTACATGTAGAGCTATCCACGGCTAGCAAGGGC
ATCATGATGAATGAACAACAAACTAActgctaaaaaaagaaaatgtaaaa
tattaAGTAGAATTTTTGAAGTCATGTAGAACTtttctaagccatttttt
caaagtaactTTTTCTAAAGGTATATTTTAACATGTTTATTtctgtgaaa
aattattttttaatgatgaTCTATATATTTAGCTAaaccaaaattttctt
tttgcatttCAGCCGACGAAAATgt
Run BLAST on NCBI

transcript from alignment at scaffold_516:443070..443744

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070269 ID=TCONS_00070269|Name=TCONS_00070269|organism=Clytia hemisphaerica|type=transcript|length=675bp|location=Sequence derived from alignment at scaffold_516:443070..443744 (Clytia hemisphaerica)
acATTTTCGTCGGCTGaaatgcaaaaagaaaattttggttTAGCTAAATA
TATAGAtcatcattaaaaaataatttttcacagaAATAAACATGTTAAAA
TATACCTTTAGAAAAagttactttgaaaaaatggcttagaaaAGTTCTAC
ATGACTTCAAAAATTCTACTtaatattttacattttctttttttagcagT
TAGTTTGTTGTTCATTCATCATGATGCCCTTGCTAGCCGTGGATAGCTCT
ACATGTAGGCACAGGAAAAACCCATGACACAGGATAGGGTAGGAAGCGTC
AGCACCTTAGCTTTCGTTTGCTTTTGGTAGGTAAATTTATTCCTGGGCCT
GATGTTTCTTAAATATCGAAATACATcgaaatatataataaatttcATAA
TAAATTGCTTTTACCTTCTGACATGTCTTCGAGCTTCCAGTCATATAACT
TCAATGATGTAATGTGGTTAATTACATACTTGATATTCTTATTTCATACC
AGAGTGACTACAAAACTTTCACATATACTGTATTTATCAATCAATTTCAC
TTTCAGACTTTCAGactttgtttgtaatttttaatttttttgacctTTTG
ATTAGTTTCGCCGGCGACTACTTGGTAACAggcaaataatgtaaacaaat
aATTGCGCCGTCAGCGAAACCGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043757XLOC_043757Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070269-exon-scaffold_516-1491911889:443070..443744TCONS_00070269-exon-scaffold_516-1491911889:443070..443744Clytia hemisphaericaexon
TCONS_00070269-exon-scaffold_516-1510915933:443070..443744TCONS_00070269-exon-scaffold_516-1510915933:443070..443744Clytia hemisphaericaexon
TCONS_00070269-exon-scaffold_516-1575043694:443070..443744TCONS_00070269-exon-scaffold_516-1575043694:443070..443744Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:443070..443744 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.228397	0	0.431006	0.337337	0	0	0.0978803	0	0.128311	0.715201	0.231397	0	0.202533	0.105166	0.259383	0.139179	0	0.117159	0.323722	0.338752	0	0.323136	0.087292	0.0793611	0.0817401	0.510658	0.626357	0.445643	0.253503	0.430466
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070269 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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