TCONS_00070266 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070266
Unique NameTCONS_00070266
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070266 ID=TCONS_00070266|Name=TCONS_00070266|organism=Clytia hemisphaerica|type=transcript|length=366bp
AATTTAGGAACACTGGACTCATACCAGGCTAATATGGTGTGGCTTCAAGG
AGCCGAAACAAAAAATGTACTGAATCACTACTATGAGTAAAATTAAAGAT
CTCTACAGCCATGAAGGGCCAAATGTCcaacagtctgggaaatcctcttt
TAATAGGGAAAAGCTGACCCATCCACCCATATCCCAAAACGTTGGTGCAG
GTTCTGTAAATCCATTCATCACGGGTTCTTGTGGAGCTCCATCATCGATT
GGTGCATTACCTAAATCCTCAAATTGACCCATTATATCAGCACCGCCATT
GTCAGCAGGTGGTGCTCCATCCTCACCGAATTGGTTTTCATCAATCCCAA
GTTCACGAAGTTTATG
Run BLAST on NCBI

transcript from alignment at scaffold_516:364270..364635

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070266 ID=TCONS_00070266|Name=TCONS_00070266|organism=Clytia hemisphaerica|type=transcript|length=366bp|location=Sequence derived from alignment at scaffold_516:364270..364635 (Clytia hemisphaerica)
CATAAACTTCGTGAACTTGGGATTGATGAAAACCAATTCGGTGAGGATGG
AGCACCACCTGCTGACAATGGCGGTGCTGATATAATGGGTCAATTTGAGG
ATTTAGGTAATGCACCAATCGATGATGGAGCTCCACAAGAACCCGTGATG
AATGGATTTACAGAACCTGCACCAACGTTTTGGGATATGGGTGGATGGGT
CAGCTTTTCCCTATTAaaagaggatttcccagactgttgGACATTTGGCC
CTTCATGGCTGTAGAGATCTTTAATTTTACTCATAGTAGTGATTCAGTAC
ATTTTTTGTTTCGGCTCCTTGAAGCCACACCATATTAGCCTGGTATGAGT
CCAGTGTTCCTAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043754XLOC_043754Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070266-exon-scaffold_516-1491911889:364270..364635TCONS_00070266-exon-scaffold_516-1491911889:364270..364635Clytia hemisphaericaexon
TCONS_00070266-exon-scaffold_516-1510915933:364270..364635TCONS_00070266-exon-scaffold_516-1510915933:364270..364635Clytia hemisphaericaexon
TCONS_00070266-exon-scaffold_516-1575043694:364270..364635TCONS_00070266-exon-scaffold_516-1575043694:364270..364635Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:364270..364635 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
190.424	193.341	187.018	213.521	1.52496	1.20612	0.873283	1.63483	177.794	183.708	105.269	132.751	83.537	94.7728	102.315	118.317	151.718	131.216	84.9334	81.0159	112.699	116.202	104.821	101.755	0.243731	0.869581	154.552	133.499	140.247	114.881
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070266 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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