TCONS_00070261 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070261
Unique NameTCONS_00070261
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070261 ID=TCONS_00070261|Name=TCONS_00070261|organism=Clytia hemisphaerica|type=transcript|length=280bp
GGCAGATAGTTACGTAAGTAAGACGGAGCTTggttatttatgattttata
gaaaaatatcattctTCTGGCAAAGCGTCTGTCAGCAAGGCTTTCAAGGC
CAAGATCAGAGTATATTCTCtcctgagacgttccacgaaagcaACCTGTG
ATAGCTAagcaggcattatattgaatggattcaagcttctgcacaaaaGA
GGCAATTCCTGGGCGGTCATATATGATATCACCGTAGTCAAGATGAGGTC
TAATGTAAGATATATAGATGGTAAGAAGAG
Run BLAST on NCBI

transcript from alignment at scaffold_516:201225..201504

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070261 ID=TCONS_00070261|Name=TCONS_00070261|organism=Clytia hemisphaerica|type=transcript|length=280bp|location=Sequence derived from alignment at scaffold_516:201225..201504 (Clytia hemisphaerica)
CTCTTCTTACCATCTATATATCTTACATTAGACCTCATCTTGACTACGGT
GATATCATATATGACCGCCCAGGAATTGCCTCttttgtgcagaagcttga
atccattcaatataatgcctgctTAGCTATCACAGGTtgctttcgtggaa
cgtctcaggaGAGAATATACTCTGATCTTGGCCTTGAAAGCCTTGCTGAC
AGACGCTTTGCCAGAagaatgatatttttctataaaatcataaataaccA
AGCTCCGTCTTACTTACGTAACTATCTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043749XLOC_043749Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070261-exon-scaffold_516-1491911889:201225..201504TCONS_00070261-exon-scaffold_516-1491911889:201225..201504Clytia hemisphaericaexon
TCONS_00070261-exon-scaffold_516-1510915933:201225..201504TCONS_00070261-exon-scaffold_516-1510915933:201225..201504Clytia hemisphaericaexon
TCONS_00070261-exon-scaffold_516-1575043694:201225..201504TCONS_00070261-exon-scaffold_516-1575043694:201225..201504Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:201225..201504 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.568064	1.07802	0	1.41953	1.98507	2.1073	0.635591	2.09835	2.25545	1.81684	1.93374	0.827044	1.96028	2.50174	0.554964	0.389687	0	1.4002	9.05338	9.3845	0	0	1.13367	0	0.860408	0	0	0	0	0.738775
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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