TCONS_00070260 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070260
Unique NameTCONS_00070260
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070260 ID=TCONS_00070260|Name=TCONS_00070260|organism=Clytia hemisphaerica|type=transcript|length=310bp
cgggacatcAGATTTAAATAATACATACGGGGTTCTACAGACTTAGACAG
GGGCCGCTCTCGTAGACCATCAGGGGCTGACCACAACGGGGCGGCACGTC
CGCCGGTGGTGTCCGCCTGAGGCTCCGTTTTTGACGGTCCTGTGTGTCCT
GTCTTTAAAAGATTGTGTCTCGATCTATTTTCGTACTTCATAATCTGACA
ACGTACTCGATTGCGATACGATACCAAAATTACTGGCGTAGATGAAGCAA
AAATGATCACACCACGTTCATAAAAGACGTTTTTGATTCAAAGTTCCAAT
CGAAGACGTA
Run BLAST on NCBI

transcript from alignment at scaffold_516:192517..192826

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070260 ID=TCONS_00070260|Name=TCONS_00070260|organism=Clytia hemisphaerica|type=transcript|length=310bp|location=Sequence derived from alignment at scaffold_516:192517..192826 (Clytia hemisphaerica)
TACGTCTTCGATTGGAACTTTGAATCAAAAACGTCTTTTATGAACGTGGT
GTGATCATTTTTGCTTCATCTACGCCAGTAATTTTGGTATCGTATCGCAA
TCGAGTACGTTGTCAGATTATGAAGTACGAAAATAGATCGAGACACAATC
TTTTAAAGACAGGACACACAGGACCGTCAAAAACGGAGCCTCAGGCGGAC
ACCACCGGCGGACGTGCCGCCCCGTTGTGGTCAGCCCCTGATGGTCTACG
AGAGCGGCCCCTGTCTAAGTCTGTAGAACCCCGTATGTATTATTTAAATC
Tgatgtcccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043748XLOC_043748Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070260-exon-scaffold_516-1491911889:192517..192826TCONS_00070260-exon-scaffold_516-1491911889:192517..192826Clytia hemisphaericaexon
TCONS_00070260-exon-scaffold_516-1510915933:192517..192826TCONS_00070260-exon-scaffold_516-1510915933:192517..192826Clytia hemisphaericaexon
TCONS_00070260-exon-scaffold_516-1575043694:192517..192826TCONS_00070260-exon-scaffold_516-1575043694:192517..192826Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:192517..192826 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.702225	0.34239	0.397548	0	0.473495	0	1.35423	0.845211	0.887628	0.73298	0	0.233839	2.56865	2.18256	0.199373	0.427916	0.527158	0.81048	2.61268	3.51512	0.678951	1.98701	0.402579	0.732005	1.13092	3.70084	0.481445	1.54143	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070260 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top