TCONS_00070257 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070257
Unique NameTCONS_00070257
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length638

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070257 ID=TCONS_00070257|Name=TCONS_00070257|organism=Clytia hemisphaerica|type=transcript|length=638bp
NNTCCTTTGATGGGTTTCTTGAGATCCATACTCCCTGTTGTCATGCTGAT
AGTGTTGTTCCTTAAAATCATTTTGGTACTGATTTTCTTTGACATCCCAT
TTGTTTAGatattctctctctctctctctctgtgGGTAGGTTTCGGCAtt
tctttttgttccttttaCATGTGTTAGCTGACACATCTTATTGAAACATT
CTCCTTTCCTCAGTGAATCAATGCacatttttgggtgaaaaaagaGACAG
TTTCTACCTTTTTGACAGCCAACTCTGGCTCTGGTTCCGTGCTTCATGAA
TTTTCGACATGCTTATGGATGGTCGAACTTGCAGCCTCTTCCCTTTATTC
CGTACTTGCATTTTCCTTTTACATAGTGCGCACAGGTTTTGGATATCTGT
CGATTTTGGTCCGTCAAATTGTCACTTATTTCAATTGTCTCATTTGACTC
TGAGTTGTCTTTATCACTCAGGATTGGATCACTCATATTGTCATCCTCAT
CTTGTTTGCCTGACATTGGTATTGGCTTGACACGGTTATTAAGGTCTCTc
tgtcttttgtttttcttctttcctgCTTCGCTCTTTGGGAGGTTCTCATT
AGCACAGTGATCACAAAGGTAGTAGAGGTTTTTGATNN
Run BLAST on NCBI

protein sequence of TCONS_00070257-protein

>TCONS_00070257-protein ID=TCONS_00070257-protein|Name=TCONS_00070257-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
IKNLYYLCDHCANENLPKSEAGKKKNKRQRDLNNRVKPIPMSGKQDEDDN
MSDPILSDKDNSESNETIEISDNLTDQNRQISKTCAHYVKGKCKYGIKGR
GCKFDHP
Run BLAST on NCBI

transcript from alignment at scaffold_516:7812..8449

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070257 ID=TCONS_00070257|Name=TCONS_00070257|organism=Clytia hemisphaerica|type=transcript|length=638bp|location=Sequence derived from alignment at scaffold_516:7812..8449 (Clytia hemisphaerica)
NNATCAAAAACCTCTACTACCTTTGTGATCACTGTGCTAATGAGAACCTC
CCAAAGAGCGAAGcaggaaagaagaaaaacaaaagacagAGAGACCTTAA
TAACCGTGTCAAGCCAATACCAATGTCAGGCAAACAAGATGAGGATGACA
ATATGAGTGATCCAATCCTGAGTGATAAAGACAACTCAGAGTCAAATGAG
ACAATTGAAATAAGTGACAATTTGACGGACCAAAATCGACAGATATCCAA
AACCTGTGCGCACTATGTAAAAGGAAAATGCAAGTACGGAATAAAGGGAA
GAGGCTGCAAGTTCGACCATCCATAAGCATGTCGAAAATTCATGAAGCAC
GGAACCAGAGCCAGAGTTGGCTGTCAAAAAGGTAGAAACTGTCtcttttt
tcacccaaaaatgtGCATTGATTCACTGAGGAAAGGAGAATGTTTCAATA
AGATGTGTCAGCTAACACATGtaaaaggaacaaaaagaaaTGCCGAAACC
TACCcacagagagagagagagagagaatatCTAAACAAATGGGATGTCAA
AGAAAATCAGTACCAAAATGATTTTAAGGAACAACACTATCAGCATGACA
ACAGGGAGTATGGATCTCAAGAAACCCATCAAAGGANN

Coding sequence (CDS) from alignment at scaffold_516:7812..8449

>TCONS_00070257 ID=TCONS_00070257|Name=TCONS_00070257|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_516:7812..8449 (Clytia hemisphaerica)
ATCAAAAACCTCTACTACCTTTGTGATCACTGTGCTAATGAGAACCTCCC
AAAGAGCGAAGcaggaaagaagaaaaacaaaagacagAGAGACCTTAATA
ACCGTGTCAAGCCAATACCAATGTCAGGCAAACAAGATGAGGATGACAAT
ATGAGTGATCCAATCCTGAGTGATAAAGACAACTCAGAGTCAAATGAGAC
AATTGAAATAAGTGACAATTTGACGGACCAAAATCGACAGATATCCAAAA
CCTGTGCGCACTATGTAAAAGGAAAATGCAAGTACGGAATAAAGGGAAGA
GGCTGCAAGTTCGACCATCCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043745XLOC_043745Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070257-proteinTCONS_00070257-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070257-exon-scaffold_516-1491911889:7812..8449TCONS_00070257-exon-scaffold_516-1491911889:7812..8449Clytia hemisphaericaexon
TCONS_00070257-exon-scaffold_516-1510915933:7812..8449TCONS_00070257-exon-scaffold_516-1510915933:7812..8449Clytia hemisphaericaexon
TCONS_00070257-exon-scaffold_516-1575043694:7812..8449TCONS_00070257-exon-scaffold_516-1575043694:7812..8449Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:7812..8449 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.54927	4.98915	5.29367	6.40754	22.3925	16.9949	16.5356	22.2421	7.9899	8.52955	9.36567	10.8861	5.9355	6.32504	2.81279	3.47052	2.71214	3.92551	3.14585	3.8342	6.0128	4.43637	1.07424	2.52007	13.4579	14.1488	2.62718	1.84203	2.82183	2.77344
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070257 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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