TCONS_00070256 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070256
Unique NameTCONS_00070256
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length882

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070256 ID=TCONS_00070256|Name=TCONS_00070256|organism=Clytia hemisphaerica|type=transcript|length=882bp
TGATAAAAGTGTCGTCTGCTGGCAAATTGATCCATTGCTATGATGTGCAA
ACAAACTTCTCGTTTACATTATTCAATACCAACTCGATAGATGTTAATGT
GATCGCAGGAGAAATATCTGATTCAGTTTACAGTTTTTTTGGTCTACCAC
AGACCATTATTTCAAACCTACAGTGGAATTTGATGGAAGTGGTaaatgcc
attttgaaaatgttgtTTCGATATTAAAGATATGGAGCAGCACACTTCGG
ATGGTGGTTACATGGtgcattgttttgatttggccACCAATTTCAGCCTT
GCCTTGTTTAAGGCTGATACAATAATCAACAATGAATGGGAAAATACTTT
GNNNNNNNNNNNNNNAAAGATATGGAGCAGCACACTTCGGATGGTGGTTA
CATGGtgcattgttttgatttggccACCAATTTCAGCCTTGCCTTGTTTA
AGGCTGATACAATAATCAACAATGAATGGGAAAATACTTTGGTCGAGAAg
attcgaccatttggaagGCCACGTAGCATCATCTGCTCATCTACAGcgac
aattattttgaagagGATAACTCCCTCCTTTATTGTTCAAGATGGTAACT
CGATCCATCCAATTTATGACTTGATCGAGAAAAATAGATGGGCAGACAAA
ATGTATTTATTGGACGTACAAAgaTTGACGTGGTAAACGTGTCGTCTGCT
GGCAAATTGATCCATTGCTATGATGTGCAAACAAACTTCTCGTTTACATT
ATTCAATACCAACACGATAGATGTTAATGTGATCGCAGAATAAATATCTG
ATTCAGTTTACAGGTTGTTTGGTCTACCACAGACCATTATTTAAAACCTA
CAGTGGAATTTGATGGAAGTGCTaaatgccat
Run BLAST on NCBI

protein sequence of TCONS_00070256-protein

>TCONS_00070256-protein ID=TCONS_00070256-protein|Name=TCONS_00070256-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MGKYFXXXXXKDMEQHTSDGGYMVHCFDLATNFSLALFKADTIINNEWEN
TLVEKIRPFGRPRSIICSSTATIILKRITPSFIVQDGNSIHPIYDLIEKN
RWADKMYLLDVQRLTW
Run BLAST on NCBI

transcript from alignment at scaffold_516:453418..455239-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070256 ID=TCONS_00070256|Name=TCONS_00070256|organism=Clytia hemisphaerica|type=transcript|length=1822bp|location=Sequence derived from alignment at scaffold_516:453418..455239- (Clytia hemisphaerica)
TGATAAAAGTGTCGTCTGCTGGCAAATTGATCCATTGCTATGATGTGCAA
ACAAACTTCTCGTTTACATTATTCAATACCAACTCGATAGATGTTAATGT
GATCGCAGGAGAAATATCTGATTCAGTTTACAGTTTTTTTGGTCTACCAC
AGACCATTATTTCAAACCTACAGTGGAATTTGATGGAAGTGGTAAATGCC
ATTTTGAAAATGTTGTGTAAGTATTATAAATATNACAGTGGAATTTGATG
GAAGTGCTAAATGCCATTTTGAAAATGTTGTGTAAGTATTATAAATATTT
TTTATTTAATTAATGATGATGATGATGATGAGTCTTGCACAAACGAAAAA
TGTTTTGATTTATTTAGTTCTATGTTTCTTGATCAATATAATTACTTATT
TTTTAATGAAAAATTTGATTAAATTATGCTAAGTTCTGAGATGATGTCTA
CTTTTGACAGAGAGGTAAAAAAGGAAGATGTTTAAATAAAGAAAATACAT
TTTTATTCCATCGATGCTTTCTTGAAAGGCTGAGATAATATAAAATCCAC
TAATTTTAATTCGAAATGATTTGTAAACTGTACAAATAGTAATTTATGTA
AGTGATTTACACTAAAATCGAAACTTCTGTTTAGTTCGATATTAAAGATA
TGGAGCAGCACACTTCGGATGGTGGTTACATGGTGCATTGTTTTGATTTG
GCCACCAATTTCAGCCTTGCCTTGTTTAAGGCTGATACAATAATCAACAA
TGAATGGGAAAATACTTTGNNNNNNNNNNNNNNAAAGATATGGAGCAGCA
CACTTCGGATGGTGGTTACATGGTGCATTGTTTTGATTTGGCCACCAATT
TCAGCCTTGCCTTGTTTAAGGCTGATACAATAATCAACAATGAATGGGAA
AATACTTTGGTCGAGAAGATTCGACCATTTGGAAGGCCACGTAGCATCAT
CTGCTCATCTACAGCGACAATTATTTTGAAGAGGATAACTCCCTCCTTTA
TTGTTCAAGATGGTAACTCGATCCATCCAATTTATGACTTGATCGAGAAA
AATAGATGGGCAGACAAAATGTATTTATTGGACGTACAAAGTAAGTAAAG
ATTTTTTCAAATTGCTTGTTTTTTTTGAAGAAATCAAACCAAATCAAAGT
TCATTTATCATACCATTGAACCACTCACTATTAGCATTCTATTGTTCTTG
TTGTCACTGTAATTGTTTTGTTTAGCATTTATCCAATATTTTCTTTCATT
GGGATAAACCTTTTTGAATCCATCTTGTTGCTGAAAAATGTTTAGATTTA
CGCAATTTTGAAAACTTTGTGTAAGTATTAAAAATATTTTTTATTTAATT
AATGATGATGATGAGTCTTGTAGGAACGAAAAATGTTTTCATTTATTTAG
TTTTATGTTTCTTGATCTAAATAAATTTATTTTATTAAAAAATTTGATTA
AATTTTGCTAAGTTCTGAGATGATGCGTACTTTTGACAGAGAGGTAAAAA
AGGAAGATGCTTAAATAAAGGAAATACATTTTTATTCCCCTTTTTATTTT
TTTTTCATTTTCAAAAATTGTTTTAAAAGCCTCCAATGAGTATATTCAAA
ATTATTTTTTAGGATTGACGTGGTAAACGTGTCGTCTGCTGGCAAATTGA
TCCATTGCTATGATGTGCAAACAAACTTCTCGTTTACATTATTCAATACC
AACACGATAGATGTTAATGTGATCGCAGAATAAATATCTGATTCAGTTTA
CAGGTTGTTTGGTCTACCACAGACCATTATTTAAAACCTACAGTGGAATT
TGATGGAAGTGCTAAATGCCAT

Coding sequence (CDS) from alignment at scaffold_516:453418..455239-

>TCONS_00070256 ID=TCONS_00070256|Name=TCONS_00070256|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_516:453418..455239- (Clytia hemisphaerica)
GATTGACGTGGTAAATGGGAAAATACTTTGNNNNNNNNNNNNNNAAAGAT
ATGGAGCAGCACACTTCGGATGGTGGTTACATGGTGCATTGTTTTGATTT
GGCCACCAATTTCAGCCTTGCCTTGTTTAAGGCTGATACAATAATCAACA
ATGAATGGGAAAATACTTTGGTCGAGAAGATTCGACCATTTGGAAGGCCA
CGTAGCATCATCTGCTCATCTACAGCGACAATTATTTTGAAGAGGATAAC
TCCCTCCTTTATTGTTCAAGATGGTAACTCGATCCATCCAATTTATGACT
TGATCGAGAAAAATAGATGGGCAGACAAAATGTATTTATTGGACGTACAA
AGATTGACGTGGTAAATGGGAAAATACTTTGNNNNNNNNNNNNNNAAAGA
TATGGAGCAGCACACTTCGGATGGTGGTTACATGGTGCATTGTTTTGATT
TGGCCACCAATTTCAGCCTTGCCTTGTTTAAGGCTGATACAATAATCAAC
AATGAATGGGAAAATACTTTGGTCGAGAAGATTCGACCATTTGGAAGGCC
ACGTAGCATCATCTGCTCATCTACAGCGACAATTATTTTGAAGAGGATAA
CTCCCTCCTTTATTGTTCAAGATGGTAACTCGATCCATCCAATTTATGAC
TTGATCGAGAAAAATAGATGGGCAGACAAAATGTATTTATTGGACGTACA
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043744XLOC_043744Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070256-proteinTCONS_00070256-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070256-exon-scaffold_516-1575043694:455024..455239TCONS_00070256-exon-scaffold_516-1575043694:455024..455239Clytia hemisphaericaexon
TCONS_00070256-exon-scaffold_516-1575043694:454150..454605TCONS_00070256-exon-scaffold_516-1575043694:454150..454605Clytia hemisphaericaexon
TCONS_00070256-exon-scaffold_516-1575043694:453418..453627TCONS_00070256-exon-scaffold_516-1575043694:453418..453627Clytia hemisphaericaexon
TCONS_00070256-exon-scaffold_516-1510915933:455024..455239TCONS_00070256-exon-scaffold_516-1510915933:455024..455239Clytia hemisphaericaexon
TCONS_00070256-exon-scaffold_516-1510915933:454150..454605TCONS_00070256-exon-scaffold_516-1510915933:454150..454605Clytia hemisphaericaexon
TCONS_00070256-exon-scaffold_516-1510915933:453418..453627TCONS_00070256-exon-scaffold_516-1510915933:453418..453627Clytia hemisphaericaexon
TCONS_00070256-exon-scaffold_516-1491911889:455024..455239TCONS_00070256-exon-scaffold_516-1491911889:455024..455239Clytia hemisphaericaexon
TCONS_00070256-exon-scaffold_516-1491911889:454150..454605TCONS_00070256-exon-scaffold_516-1491911889:454150..454605Clytia hemisphaericaexon
TCONS_00070256-exon-scaffold_516-1491911889:453418..453627TCONS_00070256-exon-scaffold_516-1491911889:453418..453627Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:453418..455239 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.527158	0.514062	0.0596875	0	0.497632	0.280882	0.881068	0.634497	0.533071	1.65074	1.44202	1.08836	0.666133	0.655376	0.0299338	0.192741	0.0791471	0.162247	0.224152	0.11728	0.101937	0.149164	0.181329	0.109903	0.113197	0.151539	0.0722838	0.0771433	0.0585104	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070256 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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