TCONS_00070254 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070254
Unique NameTCONS_00070254
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1621

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070254 ID=TCONS_00070254|Name=TCONS_00070254|organism=Clytia hemisphaerica|type=transcript|length=1621bp
CTTAAAGACATTGGCGCGTGCCAAGATCTTTTTTAACAATACAACTACCT
GCAAAATAACACGCTTGTTTTAGGGTTATATGTGCAAAACGAGAAACTTG
TAATTCCTTCTCTATTTATTCAAGTTCCTTGATCAAAGAAAACCCGAGAA
CCTTCGCAGGTCTTCTTGCAGAACCATTCCCTTTAGAGCGCATGCGTGGA
ATGCGTTAAGCACGAAGAGCTGCTTGGAAGTTAAATTATACTTAGATTTT
CTCCCGAACAAGAGACTAGCCTGTAAAAACACTATATAACAATCCAGCCT
AGAGCGCCCTGCGAGACCCCGGTCAAAACACGAGATTATTCCTTTCTTAG
CCTTGTACAAGCGACAAGGAAGACACGTCTATCTACTAAATAAAATCCTA
AGGGATCCCTGCAATCAAGACTTCAACTATGGAGCAATTGACATTACGTG
GAACTTTAAAAGGTCATAATGGATGGGTCACCCAAATTGCCACCACACCT
CAAGATccaaaccaaattttgtcaGCCTCAAGAGACAAGACCCTCATTTT
GTGGGAATTGACTCGTGATGACGAAATGAACTATGGAGTACCAAAGAGAT
GCCTCACAGGACACAACCACTTCATCTCTGATGTAGTCATGTCTTCTGAT
GGACAATTCGCACTCTCTGGATCATGGGACAAAACTCTTCGTCTTTGGGA
TTTGAACGCtGGAATCACAACTCGTCAATTTGTTGGACACACTAAAGATG
TCTTGAGTGTTGCCTTCTCTGCTGACAACCGACAAATTGTCTCTGGATCC
CGTGACAATACCATCAAATTGTGGAACACATTAGGACAATGTAAATACAC
AATCAGCGATGAATGTCACACCGAATGGGTCTCATGTGTTCGATTCTCAC
CAAACACACAAAATCCAATCATCGTTTCATGCGGTTGGGACAAGGCTGTT
AAGgTCTGGAACTTGACCAACTGTAAATTGAAGATCAACCATTTCGGACA
CACTGGATACTTGAACACAGTTACAGTCTCTCCTGATGGTTCATTGTGTG
CTTCTGGTGGCAAAGACGGAAGAGCTATGTTGTGGGATTTGAACGAAGGA
AAACATCTTTACACTTTGGATGGTGGAAATATCATCAACTCATTGTGTTT
CAGTCCAAACAGATACTGGCTTTGTGCTGCTACAGGACCAAGCATCAAGA
TCTGGGACTTGGAATCCAAATCTGTCGTTGATGAATTGAAACCAGAGGTG
ATAAGCGTCAACAACAAATCCAAACAATCAGCTGAATGCATCTCCTTGGC
CTGGTCCGCTGATGGACAAACATTGTTTGCAGGGTACACAGATAACCTTA
TTCGTGTCTGGCAAGTCACAAGAATGTAACTTGTTAAACCAAATATATTG
TACGGGAATCCCaaaaatattatgttttttttcattcaacgtTACCCACT
TTTAGAATTCGATTAGTTGGCTAAGTAGACGTTAGAAAAACCATAAAGGA
ATCAAATTTGTTAAAGGGACATTGCGGGAGTTTTAACAATAGAAGCCTTT
CGTTTTTAAGAATCGGTAGATTgtgttttgtgtattttacagaccagcgC
GCTTTATACTAAAGCCTAGGT
Run BLAST on NCBI

protein sequence of TCONS_00070254-protein

>TCONS_00070254-protein ID=TCONS_00070254-protein|Name=TCONS_00070254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
MEQLTLRGTLKGHNGWVTQIATTPQDPNQILSASRDKTLILWELTRDDEM
NYGVPKRCLTGHNHFISDVVMSSDGQFALSGSWDKTLRLWDLNAGITTRQ
FVGHTKDVLSVAFSADNRQIVSGSRDNTIKLWNTLGQCKYTISDECHTEW
VSCVRFSPNTQNPIIVSCGWDKAVKVWNLTNCKLKINHFGHTGYLNTVTV
SPDGSLCASGGKDGRAMLWDLNEGKHLYTLDGGNIINSLCFSPNRYWLCA
ATGPSIKIWDLESKSVVDELKPEVISVNNKSKQSAECISLAWSADGQTLF
AGYTDNLIRVWQVTRM
Run BLAST on NCBI

transcript from alignment at scaffold_516:426590..433994-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070254 ID=TCONS_00070254|Name=TCONS_00070254|organism=Clytia hemisphaerica|type=transcript|length=7405bp|location=Sequence derived from alignment at scaffold_516:426590..433994- (Clytia hemisphaerica)
CTTAAAGACATTGGCGCGTGCCAAGATCTTTTTTAACAATACAACTACCT
GCAAAATAACACGCTTGTTTTAGGGTTATATGTGCAAAACGAGAAACTTG
TAATTCCTTCTCTATTTATTCAAGTTCCTTGATCAAAGAAAACCCGAGAA
CCTTCGCAGGTCTTCTTGCAGAACCATTCCCTTTAGAGCGCATGCGTGGA
ATGCGTTAAGCACGAAGAGCTGCTTGGAAGTTAAATTATACTTAGATTTT
CTCCCGAACAAGAGACTAGCCTGTAAAAACACTATATAACAATCCAGCCT
AGAGCGCCCTGCGAGACCCCGGTCAAAACACGAGATTATTCCTTTCTTAG
CCTTGTACAAGCGACAAGGAAGACACGTCTATCTACTAAATAAAATCCTA
AGGGATCCCTGCAATCAAGACTTCAACTATGGAGCAATTGACATTACGTG
GAACTTTAAAAGGTCATAATGGATGGGTCACCCAAATTGCCACCACACCT
CAAGATCCAAACCAAATTTTGTCAGCCTCAAGAGGTATCCATATTTACTG
AATTTTTGAAGCTCTAAATGTTTGTGTGAAAACAAATTATTTGAGAAAAG
TGCTATCTTGAACAGTCTATGCCACTAACAAGATCAGGAAGATTGGGCGG
TTCCAGTTACAGTCTGTTATGACATGGACTTTCCGTAACAGTTTACCTTT
GTAGAGCCTCCCGATTTCCGTAATATTCAAGAATTTTTAAGGATATCTTG
GATTTTTTTATACCACCAATGACCAATAGGAAAATCCCACATTTTCTGGA
ATCTTTTTCAAAATTTCTCAGGATTTCCAAGCGATGGGTACATANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGGATTCGAAAAGTAAATATCATGTCTGGGGAAATCCC
TCTGATTGGAATGTTTACTTAAGAAACTTTTCTAAAGAGGTTTTTGCGGT
TCTAGCCTCTACAAAGGAGAGTTTTAGAAAATATAAAATCGTTCTGTATA
TTACACAATACTATTATCATGCATTATGGTTTATGCATTTTGTAGCCGTC
AGATTTCCAAGTGAAAAAAAAATTCCTAACAACCCTGTCTACAGAGGGGG
TATGGTTTTTCTCTGAAATCACCCATTCTTTAGAATGGGGAAAAGTTTTC
TCAAGTGGGAACATTTTTAAATTGAATTCTGTCTGTTTGGGAAGATTCTT
CCTCATCAGGAAGTTGAATAGTGACTGATTTTTTGGCAAAGCTGTACGAT
GGCTGGCAAAAGCTGAAATGTTTTTGAGGTCTTAAAGTATCAAACTTTAA
GATTTTTCACCAAAAGAAAAATAAACTTCACCGTGGAAATGTTTGGTTGA
GAAAAAAACTACTGAAACTTCCAAACAGGAACTTCCAACCCAATCAGGAA
GTCCTCGCGAAGTTGTGCACCGACTGGATATGATATACCGTTGGAAAGGT
TTTTTCAAACAGATTCTAAAAATCATCACCATATGCATTTCAAAATGAAC
TTAGACACTTCCAGAACACATGTTAGTGTATTTTAATAGCAGGCAGTAGC
AGGCCATATTTTAAAAAGGGAGGGCAGCATCCGTTGGTGGTGAAAAAGGG
CACTTTTCTCGTGTTTCTCCACTAAAAAGGCTGTTATTACCAAAATTTTA
GTGATTTCAGGAGGGCTAAAAGGGCATGAAAAACGGCCTGAATAGTGTGG
AAAGTTTTGTCTGTAACAGGGGGCTGGGCGACACAGGAATTCCAAAGGCA
AAATTTTTCTCTGAAATTCGAAATATCCAAGGCGCGAGAAGAAAATGTAT
GAATTCCCCATGCAAATGAATTAAAAAGCCAAAAAAGAGATTCTTAGCGA
CAGCTACTTGCTAGTATATGTCAATAATGACCTTCATTTTTAAGGAAATA
TTTAGTCACATTTTTGCGAATCTTGTTATACTTTTTTTATAATTATCTTT
CAACCTTCAAAAAACTTTTTGTCATTAATTTTCGCACACTTTACCTTTTA
TAAAACAGAAATAAGTATCTCAAAAAAGGAGCATAATTATTCTCTTCCTT
TCCAAAAAAACATATTAGTCCTTTAATTACTTTGCATCCCACTTCTAAAA
ATTCTTCCCCATTCTGAAGAATCTTCCTTTCTGATTGTAGTGGCATATAC
TTTTGAATTTGTATGGAACGCATCTTTTCAAAGGACTGGGAAACCATTTC
TGTGTTTTGCAAAACAGTTTTGGGCCCATATTTTGTTGCTCTGCTCTTAA
TTACAGCCTTAACTTCTGAGATTTAAATGCGCAACTACATGGCTTTAGAT
ATTGTAGAATTTTTATGTGTGCAATATAAGCGCTTATCACTAGCTCTTTG
AATGGGGTGGAAAACATGTAATCNAACTACATGGCTTTAGATATTGTAGA
ATTTTTATGTGTGCAATATAAGCGCTTATCACTAGCTCTTTGAATGGGGT
GGAAAACATGTAATCTCATCCTTAACTAGTCCATTGTTTAAACAAACTAA
TAAGCTTTTTACAAGACTTGTGAAAAAATTCAANCAAAAAAGAGATTCTT
AGCGACAGCTACTTGCTAGTATATGTCAATAATGACCTTCATTTTTAAGG
AAATATTTAGTCACATTTTTGCGAATCTTGTTATACTTTTTTTATAATTA
TCTTTCAACCTTCAAAAAACTTTTTGTCATTAATTTTTGCACACTTTACC
TTTTATAAAACAGAAATAAGTATCTCAAAAAAGGAGCATAATTATTCTCT
TCCTTTCCAAAAAAACATATTAGTCCTTTAATTACTTTGCATCCCACTTC
TAAAAATTCTTCCCCATTCTGAAGAATCTTCCTTTCTGATTGTAGTGGCA
TATACTTTTGAATTTGTATGGAACGCATCTTTTCAAAGGACTGGGAAACC
ATTTCTGTGTTTTGCAAAACAGTTTTGGGCCCATATTTTGTTGCTCTGCT
CTTAATTACAGCCTTAACTTCTGAGATTTAAATGCGCAACTACATGGCTT
TAGATATTGTAGAATTTTTATGTGTGCAATATAAGCGCTTATCACTAGCT
CTTTGAATGGGGTGGAAAACATGTAATCGCATCCTTAACTAGTCCATTGT
TTAAACAAACTAATAAGCTTTTTACAAGACTTGTGAAAAAATTCCAAAAA
GATACCCTTTCAATGTTACAGTGTTGAAACCTTTCTCCCTGATTATGGAA
CACTTAAGATTCCTTAAATCAACTTTGTATTTTGGTACCTTAATATTCAC
AACAATCTGTCACTAAAAAACTTTTCTATTACATTTAGACAAGACCCTCA
TTTTGTGGGAATTGACTCGTGATGACGAAATGAACTATGGAGTACCAAAG
AGATGCCTCACAGGACACAACCACTTCATCTCTGATGTAGTCATGTCTTC
TGATGGACAATTCGCACTCTCTGGATCATGGGACAAAACTCTTCGTCTTT
GGGATTTGAACGCGTAAGTTGATTACCTGATCTATTACCTTAGGGAAGAA
ATTTTCGCGAGAAGAAATCTTTGCGGAATTTAATTTTGCGAATGAGCCGA
TTTCAAGAGTTTCACGGAATTTAATTTCGTGATTGAGAAATTTCAAAAGA
ATTCTTTTTACAGAGAAAATGTTTTTGATATTTTTCATCAATTTCAAGAC
ATATTTCAGTCACATTAACAAACTTTAACAACAAAATTATAACATCAAAT
ATGAATTTTTTTATGATAAGTCATGATTAAACTTCATTGCCGTCATCTTC
CTCCAAAATTGAGTTTCGTGGAATTTAATTTCGCGACTTAGCCATTTTGG
TGTGTTTCGCGGAATTAAATTCCGCGAAAATTTCTTCCCTTAAGGTATTA
TTAGTTTATACACAACCAAAAACTTCCTTTTTCTAAAAGATTAAATTTGT
TATGTGCTAGTATTTGAGTTATGTAACTCTCAGGAAAACAATACTTATGA
TTAAGCAAATTACATAATATACTCTCTTCATATTTTTTCCCTATCACTGA
AGGTGTTATATTAGGCATTTTGGATTCACAATTCAGTTACCTTAAGGGAG
CTAATTTTTGCGGGAAATAAATTTTGCGGTTTTTGCAGATTTAGGCCCAA
ACCGTAAAATTAAGTTCCCGCAAAAATTTTCAAATGTGAAAAACAAAGGT
CTAATAATTCACAGTACCGCTCTAATTTTCTTTCAAGTGAGAAATCCGCA
AAATTAAGTTCCCGCAAATATTAAATATTAAATCTTGAACTTCGAACTGC
AAAAATTAGTTCCCGCAAAAAAATAATTCCCGCAAAAAATAATTCCCTTA
AGGTATCTGAAATCCAAAGTAAATTTTCTGTTTTAAAGGATCACCCATTT
TAATCAAATTATTTATTTATTTCAGTGGAATCACAACTCGTCAATTTGTT
GGACACACTAAAGATGTCTTGAGTGTTGCCTTCTCTGCTGACAACCGACA
AATTGTCTCTGGATCCCGTGACAATACCATCAAATTGTGGAACACATTAG
GACAATGTAAATACACAATCAGCGATGAATGTCACACCGAATGGGTCTCA
TGTGTTCGATTCTCACCAAACACACAAAATCCAATCATCGTTTCATGCGG
TTGGGACAAGGCTGTTAAGGTAAATTTCTTCGTTTAAGCAACTTTGAGTT
TTGAAATGATTTTCGGATAATTATGACAGGAGGAGAGAATGGGGGTTATT
GGGTCTAATTCAGATTTGAATTTTTAATGAAAATTATTTTTCAATTAGGT
CTGGAACTTGACCAACTGTAAATTGAAGATCAACCATTTCGGACACACTG
GATACTTGAACACAGTTACAGTCTCTCCTGATGGTTCATTGTGTGCTTCT
GGTGGCAAAGACGGAAGAGCTATGTTGTGGGATTTGAACGAAGGAAAACA
TCTTTACACTTTGGATGGTGGAAATATCATCAACTCATTGTGTTTCAGTC
CAAACAGATACTGGCTTTGTGCTGCTACAGGACCAAGCATCAAGATCTGG
GTAAGTTCAGAAAAACTAGCATCCAAATATTGGTTTTCAGTTTCAATTAA
CAGTCCATGTTAAAATCAAGTTTATCTGGATAGATTATGTGTTCTGGAAA
TTTAGCTCAATGTCTGGTTCAGAGCTAAATAGCACTTTGTCTCTTACTGT
TGTTGACTTCTCTTATCAAAATTCTTGTTAATTTACATCAGAAAGCTGGA
CGTTCAAAAGATATCAAAATCTCATTCTAAACTGCCCTCTCGTTTTGGTT
TTAATTTTGAAATCATTTAAATGTTCCTTCCTTCTTTAGGACTTGGAATC
CAAATCTGTCGTTGATGAATTGAAACCAGAGGTGATAAGCGTCAACAACA
AATCCAAACAATCAGCTGAATGCATCTCCTTGGCCTGGTCCGCTGATGGA
CAAACATTGTTTGCAGGGTACACAGATAACCTTATTCGTGTCTGGCAAGT
CACAAGAATGTAACTTGTTAAACCAAATATATTGTACGGGAATCCCAAAA
ATATTATGTTTTTTTTCATTCAACGTTACCCACTTTTAGAATTCGATTAG
TTGGCTAAGTAGACGTTAGAAAAACCATAAAGGAATCAAATTTGTTAAAG
GGACATTGCGGGAGTTTTAACAATAGAAGCCTTTCGTTTTTAAGAATCGG
TAGATTGTGTTTTGTGTATTTTACAGACCAGCGCGCTTTATACTAAAGCC
TAGGT

Coding sequence (CDS) from alignment at scaffold_516:426590..433994-

>TCONS_00070254 ID=TCONS_00070254|Name=TCONS_00070254|organism=Clytia hemisphaerica|type=CDS|length=4755bp|location=Sequence derived from alignment at scaffold_516:426590..433994- (Clytia hemisphaerica)
GACTTGGAATCCAAATCTGTCGTTGATGAATTGAAACCAGAGGTGATAAG
CGTCAACAACAAATCCAAACAATCAGCTGAATGCATCTCCTTGGCCTGGT
CCGCTGATGGACAAACATTGTTTGCAGGGTACACAGATAACCTTATTCGT
GTCTGGCAAGTCACAAGAATGTAAGTCTGGAACTTGACCAACTGTAAATT
GAAGATCAACCATTTCGGACACACTGGATACTTGAACACAGTTACAGTCT
CTCCTGATGGTTCATTGTGTGCTTCTGGTGGCAAAGACGGAAGAGCTATG
TTGTGGGATTTGAACGAAGGAAAACATCTTTACACTTTGGATGGTGGAAA
TATCATCAACTCATTGTGTTTCAGTCCAAACAGATACTGGCTTTGTGCTG
CTACAGGACCAAGCATCAAGATCTGGTGGAATCACAACTCGTCAATTTGT
TGGACACACTAAAGATGTCTTGAGTGTTGCCTTCTCTGCTGACAACCGAC
AAATTGTCTCTGGATCCCGTGACAATACCATCAAATTGTGGAACACATTA
GGACAATGTAAATACACAATCAGCGATGAATGTCACACCGAATGGGTCTC
ATGTGTTCGATTCTCACCAAACACACAAAATCCAATCATCGTTTCATGCG
GTTGGGACAAGGCTGTTAAGACAAGACCCTCATTTTGTGGGAATTGACTC
GTGATGACGAAATGAACTATGGAGTACCAAAGAGATGCCTCACAGGACAC
AACCACTTCATCTCTGATGTAGTCATGTCTTCTGATGGACAATTCGCACT
CTCTGGATCATGGGACAAAACTCTTCGTCTTTGGGATTTGAACGCATGGA
GCAATTGACATTACGTGGAACTTTAAAAGGTCATAATGGATGGGTCACCC
AAATTGCCACCACACCTCAAGATCCAAACCAAATTTTGTCAGCCTCAAGA
GGACTTGGAATCCAAATCTGTCGTTGATGAATTGAAACCAGAGGTGATAA
GCGTCAACAACAAATCCAAACAATCAGCTGAATGCATCTCCTTGGCCTGG
TCCGCTGATGGACAAACATTGTTTGCAGGGTACACAGATAACCTTATTCG
TGTCTGGCAAGTCACAAGAATGTAAGTCTGGAACTTGACCAACTGTAAAT
TGAAGATCAACCATTTCGGACACACTGGATACTTGAACACAGTTACAGTC
TCTCCTGATGGTTCATTGTGTGCTTCTGGTGGCAAAGACGGAAGAGCTAT
GTTGTGGGATTTGAACGAAGGAAAACATCTTTACACTTTGGATGGTGGAA
ATATCATCAACTCATTGTGTTTCAGTCCAAACAGATACTGGCTTTGTGCT
GCTACAGGACCAAGCATCAAGATCTGGTGGAATCACAACTCGTCAATTTG
TTGGACACACTAAAGATGTCTTGAGTGTTGCCTTCTCTGCTGACAACCGA
CAAATTGTCTCTGGATCCCGTGACAATACCATCAAATTGTGGAACACATT
AGGACAATGTAAATACACAATCAGCGATGAATGTCACACCGAATGGGTCT
CATGTGTTCGATTCTCACCAAACACACAAAATCCAATCATCGTTTCATGC
GGTTGGGACAAGGCTGTTAAGACAAGACCCTCATTTTGTGGGAATTGACT
CGTGATGACGAAATGAACTATGGAGTACCAAAGAGATGCCTCACAGGACA
CAACCACTTCATCTCTGATGTAGTCATGTCTTCTGATGGACAATTCGCAC
TCTCTGGATCATGGGACAAAACTCTTCGTCTTTGGGATTTGAACGCATGG
AGCAATTGACATTACGTGGAACTTTAAAAGGTCATAATGGATGGGTCACC
CAAATTGCCACCACACCTCAAGATCCAAACCAAATTTTGTCAGCCTCAAG
AGGACTTGGAATCCAAATCTGTCGTTGATGAATTGAAACCAGAGGTGATA
AGCGTCAACAACAAATCCAAACAATCAGCTGAATGCATCTCCTTGGCCTG
GTCCGCTGATGGACAAACATTGTTTGCAGGGTACACAGATAACCTTATTC
GTGTCTGGCAAGTCACAAGAATGTAAGTCTGGAACTTGACCAACTGTAAA
TTGAAGATCAACCATTTCGGACACACTGGATACTTGAACACAGTTACAGT
CTCTCCTGATGGTTCATTGTGTGCTTCTGGTGGCAAAGACGGAAGAGCTA
TGTTGTGGGATTTGAACGAAGGAAAACATCTTTACACTTTGGATGGTGGA
AATATCATCAACTCATTGTGTTTCAGTCCAAACAGATACTGGCTTTGTGC
TGCTACAGGACCAAGCATCAAGATCTGGTGGAATCACAACTCGTCAATTT
GTTGGACACACTAAAGATGTCTTGAGTGTTGCCTTCTCTGCTGACAACCG
ACAAATTGTCTCTGGATCCCGTGACAATACCATCAAATTGTGGAACACAT
TAGGACAATGTAAATACACAATCAGCGATGAATGTCACACCGAATGGGTC
TCATGTGTTCGATTCTCACCAAACACACAAAATCCAATCATCGTTTCATG
CGGTTGGGACAAGGCTGTTAAGACAAGACCCTCATTTTGTGGGAATTGAC
TCGTGATGACGAAATGAACTATGGAGTACCAAAGAGATGCCTCACAGGAC
ACAACCACTTCATCTCTGATGTAGTCATGTCTTCTGATGGACAATTCGCA
CTCTCTGGATCATGGGACAAAACTCTTCGTCTTTGGGATTTGAACGCATG
GAGCAATTGACATTACGTGGAACTTTAAAAGGTCATAATGGATGGGTCAC
CCAAATTGCCACCACACCTCAAGATCCAAACCAAATTTTGTCAGCCTCAA
GAGGACTTGGAATCCAAATCTGTCGTTGATGAATTGAAACCAGAGGTGAT
AAGCGTCAACAACAAATCCAAACAATCAGCTGAATGCATCTCCTTGGCCT
GGTCCGCTGATGGACAAACATTGTTTGCAGGGTACACAGATAACCTTATT
CGTGTCTGGCAAGTCACAAGAATGTAAGTCTGGAACTTGACCAACTGTAA
ATTGAAGATCAACCATTTCGGACACACTGGATACTTGAACACAGTTACAG
TCTCTCCTGATGGTTCATTGTGTGCTTCTGGTGGCAAAGACGGAAGAGCT
ATGTTGTGGGATTTGAACGAAGGAAAACATCTTTACACTTTGGATGGTGG
AAATATCATCAACTCATTGTGTTTCAGTCCAAACAGATACTGGCTTTGTG
CTGCTACAGGACCAAGCATCAAGATCTGGTGGAATCACAACTCGTCAATT
TGTTGGACACACTAAAGATGTCTTGAGTGTTGCCTTCTCTGCTGACAACC
GACAAATTGTCTCTGGATCCCGTGACAATACCATCAAATTGTGGAACACA
TTAGGACAATGTAAATACACAATCAGCGATGAATGTCACACCGAATGGGT
CTCATGTGTTCGATTCTCACCAAACACACAAAATCCAATCATCGTTTCAT
GCGGTTGGGACAAGGCTGTTAAGACAAGACCCTCATTTTGTGGGAATTGA
CTCGTGATGACGAAATGAACTATGGAGTACCAAAGAGATGCCTCACAGGA
CACAACCACTTCATCTCTGATGTAGTCATGTCTTCTGATGGACAATTCGC
ACTCTCTGGATCATGGGACAAAACTCTTCGTCTTTGGGATTTGAACGCAT
GGAGCAATTGACATTACGTGGAACTTTAAAAGGTCATAATGGATGGGTCA
CCCAAATTGCCACCACACCTCAAGATCCAAACCAAATTTTGTCAGCCTCA
AGAGGACTTGGAATCCAAATCTGTCGTTGATGAATTGAAACCAGAGGTGA
TAAGCGTCAACAACAAATCCAAACAATCAGCTGAATGCATCTCCTTGGCC
TGGTCCGCTGATGGACAAACATTGTTTGCAGGGTACACAGATAACCTTAT
TCGTGTCTGGCAAGTCACAAGAATGTAAGTCTGGAACTTGACCAACTGTA
AATTGAAGATCAACCATTTCGGACACACTGGATACTTGAACACAGTTACA
GTCTCTCCTGATGGTTCATTGTGTGCTTCTGGTGGCAAAGACGGAAGAGC
TATGTTGTGGGATTTGAACGAAGGAAAACATCTTTACACTTTGGATGGTG
GAAATATCATCAACTCATTGTGTTTCAGTCCAAACAGATACTGGCTTTGT
GCTGCTACAGGACCAAGCATCAAGATCTGGTGGAATCACAACTCGTCAAT
TTGTTGGACACACTAAAGATGTCTTGAGTGTTGCCTTCTCTGCTGACAAC
CGACAAATTGTCTCTGGATCCCGTGACAATACCATCAAATTGTGGAACAC
ATTAGGACAATGTAAATACACAATCAGCGATGAATGTCACACCGAATGGG
TCTCATGTGTTCGATTCTCACCAAACACACAAAATCCAATCATCGTTTCA
TGCGGTTGGGACAAGGCTGTTAAGACAAGACCCTCATTTTGTGGGAATTG
ACTCGTGATGACGAAATGAACTATGGAGTACCAAAGAGATGCCTCACAGG
ACACAACCACTTCATCTCTGATGTAGTCATGTCTTCTGATGGACAATTCG
CACTCTCTGGATCATGGGACAAAACTCTTCGTCTTTGGGATTTGAACGCA
TGGAGCAATTGACATTACGTGGAACTTTAAAAGGTCATAATGGATGGGTC
ACCCAAATTGCCACCACACCTCAAGATCCAAACCAAATTTTGTCAGCCTC
AAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043742XLOC_043742Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070254-exon-scaffold_516-1575043694:433461..433994TCONS_00070254-exon-scaffold_516-1575043694:433461..433994Clytia hemisphaericaexon
TCONS_00070254-exon-scaffold_516-1575043694:428832..429006TCONS_00070254-exon-scaffold_516-1575043694:428832..429006Clytia hemisphaericaexon
TCONS_00070254-exon-scaffold_516-1575043694:427676..427919TCONS_00070254-exon-scaffold_516-1575043694:427676..427919Clytia hemisphaericaexon
TCONS_00070254-exon-scaffold_516-1575043694:427295..427546TCONS_00070254-exon-scaffold_516-1575043694:427295..427546Clytia hemisphaericaexon
TCONS_00070254-exon-scaffold_516-1575043694:426590..427005TCONS_00070254-exon-scaffold_516-1575043694:426590..427005Clytia hemisphaericaexon
TCONS_00070254-exon-scaffold_516-1510915933:433461..433994TCONS_00070254-exon-scaffold_516-1510915933:433461..433994Clytia hemisphaericaexon
TCONS_00070254-exon-scaffold_516-1510915933:428832..429006TCONS_00070254-exon-scaffold_516-1510915933:428832..429006Clytia hemisphaericaexon
TCONS_00070254-exon-scaffold_516-1510915933:427676..427919TCONS_00070254-exon-scaffold_516-1510915933:427676..427919Clytia hemisphaericaexon
TCONS_00070254-exon-scaffold_516-1510915933:427295..427546TCONS_00070254-exon-scaffold_516-1510915933:427295..427546Clytia hemisphaericaexon
TCONS_00070254-exon-scaffold_516-1510915933:426590..427005TCONS_00070254-exon-scaffold_516-1510915933:426590..427005Clytia hemisphaericaexon
TCONS_00070254-exon-scaffold_516-1491911889:433461..433994TCONS_00070254-exon-scaffold_516-1491911889:433461..433994Clytia hemisphaericaexon
TCONS_00070254-exon-scaffold_516-1491911889:428832..429006TCONS_00070254-exon-scaffold_516-1491911889:428832..429006Clytia hemisphaericaexon
TCONS_00070254-exon-scaffold_516-1491911889:427676..427919TCONS_00070254-exon-scaffold_516-1491911889:427676..427919Clytia hemisphaericaexon
TCONS_00070254-exon-scaffold_516-1491911889:427295..427546TCONS_00070254-exon-scaffold_516-1491911889:427295..427546Clytia hemisphaericaexon
TCONS_00070254-exon-scaffold_516-1491911889:426590..427005TCONS_00070254-exon-scaffold_516-1491911889:426590..427005Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070254-proteinTCONS_00070254-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:426590..433994 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1788.56	1876.14	1797.33	1716.24	1158.28	965.089	1473.19	1562.78	2492.67	2235.71	2332.98	2864.93	3214.47	3165.22	2910.63	2890.55	3487.62	3475.45	1257.26	1405.63	3422.68	3433.76	2563.84	2329.38	2054.58	2192.16	2964.71	2698.57	2235.93	2200.8
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00070254 vs. Swiss-Prot (Human)
Match: RACK1 (Receptor of activated protein C kinase 1 OS=Homo sapiens GN=RACK1 PE=1 SV=3)

HSP 1 Score: 548.125 bits (1411), Expect = 0.000e+0
Identity = 261/313 (83.39%), Postives = 286/313 (91.37%), Query Frame = 3 
Query:  432 EQLTLRGTLKGHNGWVTQIATTPQDPNQILSASRDKTLILWELTRDDEMNYGVPKRCLTGHNHFISDVVMSSDGQFALSGSWDKTLRLWDLNAGITTRQFVGHTKDVLSVAFSADNRQIVSGSRDNTIKLWNTLGQCKYTISDECHTEWVSCVRFSPNTQNPIIVSCGWDKAVKVWNLTNCKLKINHFGHTGYLNTVTVSPDGSLCASGGKDGRAMLWDLNEGKHLYTLDGGNIINSLCFSPNRYWLCAATGPSIKIWDLESKSVVDELKPEVISVNNKSKQSAECISLAWSADGQTLFAGYTDNLIRVWQVT 1370
            EQ+TLRGTLKGHNGWVTQIATTPQ P+ ILSASRDKT+I+W+LTRD E NYG+P+R L GH+HF+SDVV+SSDGQFALSGSWD TLRLWDL  G TTR+FVGHTKDVLSVAFS+DNRQIVSGSRD TIKLWNTLG CKYT+ DE H+EWVSCVRFSPN+ NPIIVSCGWDK VKVWNL NCKLK NH GHTGYLNTVTVSPDGSLCASGGKDG+AMLWDLNEGKHLYTLDGG+IIN+LCFSPNRYWLCAATGPSIKIWDLE K +VDELK EVIS ++K+ +  +C SLAWSADGQTLFAGYTDNL+RVWQVT
Sbjct:    3 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRD-ETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA-EPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 313
The following BLAST results are available for this feature:
BLAST of TCONS_00070254 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RACK10.000e+083.39Receptor of activated protein C kinase 1 OS=Homo s... [more]
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