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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070228 ID=TCONS_00070228|Name=TCONS_00070228|organism=Clytia hemisphaerica|type=transcript|length=1900bpRun BLAST on NCBI transcript from alignment at scaffold_516:45019..63151- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070228 ID=TCONS_00070228|Name=TCONS_00070228|organism=Clytia hemisphaerica|type=transcript|length=18133bp|location=Sequence derived from alignment at scaffold_516:45019..63151- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070228 vs. Swiss-Prot (Human)
Match: PEX13 (Peroxisomal membrane protein PEX13 OS=Homo sapiens GN=PEX13 PE=1 SV=2) HSP 1 Score: 148.288 bits (373), Expect = 7.192e-39 Identity = 77/227 (33.92%), Postives = 136/227 (59.91%), Query Frame = 3
Query: 360 ENASQNAFQSAQSFIGAFSSISMMLESTLFAVQNSVRAIAGVADQFGHLRHYLLS--SAASFYRLVNYYYKKILCVLRLKQPDTQDERFWQDAMSGRS--GTEE-----SRLYASLLFFSLVIATPWFIWKLLKSINFQQKQEEKWFEGSGEHFVAEVKFPFVARSRDEMNLSKNTIVRLAPKARQPNIKGWLLAS-DGENQGLVPANYIKVLGKNRKESTLPTTQT 1010
E +S+ AFQS +S + AF+S+SMM+++T AV NS RA+ VA+ F L+ + SA + R + Y Y+++ +L L++ +++E W ++ + G E+ ++ + LFF++++ P+ IWKLL + + + W G +H VA ++ F A S +E++ ++ LA K +QP ++GWLLAS DG+ GL+PANY+K+LGK + T+ +++
Sbjct: 123 EESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFSAFALVRTIRYLYRRLQRMLGLRR-GSENEDLWAESEGTVACLGAEDRAATSAKSWPIFLFFAVILGGPYLIWKLLSTHSDEVTDSINWASGEDDHVVARAEYDFAAVSEEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKRKGRKTVESSKV 348 The following BLAST results are available for this feature:
BLAST of TCONS_00070228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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