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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070216 ID=TCONS_00070216|Name=TCONS_00070216|organism=Clytia hemisphaerica|type=transcript|length=1599bp
GTCAACATCATCCAAACATTATCGTAGTGCTTACATAGACAATGTTAATA
GTCATTGCACATGTCGTGTTGATAAGAAAACACAAACGTATCCTCTCAAG
AAACATAGCTGGTCACATCGCTTGTTGAGCTCCTTCAGAAGGCGCCGATC
CGCCTCTTCTCTACACCACGAAGTAGAATCTTTCGTTGAAAAGAAAATTT
CGATGTCATCCATGGACCTGACTATCCTTGGAGAAGCACATGGCATGATT
ACAGACCTGCTAGCTGACACCAGTCTTCCGTTGAACGTCACCGGTACTTT
ACGTATTGTGGCTGATATGATCTCACCTCTTCTTCAGCATAGTTTACATC
GACAAGGTGCACCATTGTTGACTGTACTGGAGAAGACGAAAAACAATGAG
GATCATGAGCAAGTTCAAAACCAACCAGATCTGAAGGATGACACTCCACT
CTCACTGAAACAGCGGCTGCAACGTAATTTAGGCGTCAGCTCACGTAGGA
TGTCATCAAGTTACACGACGACTACATCTGCAACAGGAATGCCAACCATA
GATATGGAGTATCACCACAAGAAATCTAACGCTAACAAAACAAGTGCAAA
TAGTACTTCTTCACCGACTGCCATCAAAAAGACTTCTAGTAGATCTAAAT
CGTACGCGGGTGCGTTAACACCTGCAGAAAGATCCAATCTTTTGAAATCA
CACTCGCGTTCTTTTTCACAATCCACTAGTCCAACGCAGAGCGGTCTGCT
TAGGAAAGAGTTAGCCACATCAGATGACACCATTTTTAAAGTGGAAATCG
AACGCGGGAAACCGGTCTTCTTTGAAGGAATGGATGCTTCAGAATCTGAG
AACGAAACCATTGAATCGGCAGATGAGGACACGGTCAAAGATATCATCTC
CTTGAGCGGATGTACATCGTccaataataataacaacaatatTAACAACA
GGACTAAATTTGTATTAGATGAACGTTTAGAAGATGTCAAAGAGACTCCC
GAAAAAGAACCAGTAGATACTCAACCTCATAAAACTCCTTTAGAAACTGT
TGAAAATGTCGAAGATACGATAAACGAAACGGCGTCGGTTGAACCACCGT
CAACGTTAAGCACCGTAGAAGATAACGTCGAAGATGTTACGTCAGAAAGC
GTAACCACGGAAGCGACAGAAACGACACCCCCTAAACGAAGCTTACGTAA
AGTTAGTGATACGAGCCGTACCTTACGTAGTAACTCAACAGGAAGCGTTA
AAAATGAACTTAAGTCCAGTGATTCTAGTGATAATCTCGTCATTCCAGCG
TCCAATCTGATGCGTCGAAAATCGTCACGTGAGCTACACATGGAGTATGA
GATCGCCATATCCAGAGATATTGATGATATGTTAAGCAAAGTCAAGGAGT
GGGATTTCCCAATCTTCGAACTCAGTGAAAAATGCAACGTTTTAACACAA
GTAGGTGTACTTCTTCTTTTCTGTATTATCTTTCACGATTTTAAAAGCGT
CTACAATCCTTAAACTTGTTTTTTAGGATTAGTGTGATTTAAATGCGTCA
GTCTGATAACATTAAGGTTAGCCAGAAACTCGAGCAAAAGTTGGACAAG Run BLAST on NCBI transcript from alignment at scaffold_516:281305..285539+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070216 ID=TCONS_00070216|Name=TCONS_00070216|organism=Clytia hemisphaerica|type=transcript|length=4235bp|location=Sequence derived from alignment at scaffold_516:281305..285539+ (Clytia hemisphaerica)
GTCAACATCATCCAAACATTATCGTAGTGCTTACATAGACAATGTTAATA
GTCATTGCACATGTCGTGTTGATAAGAAAACACAAACGTATCCTCTCAAG
AAACATAGCTGGTCACATCGCTTGTTGAGCTCCTTCAGAAGGCGCCGATC
CGCCTCTTCTCTACACCACGAAGTAGAATCTTTCGTTGAAAAGGTATTAA
AGAGTAGATTGTATTTTAATGTCCATTATGCTACTTAGTGGATCGTCATA
ATTATGTTCTCTATATTAGTTTGAATAAAAACCACGAATTGTTAACTCCA
TAATTAAGGTTTTATGACATTTTGGTTGGCTATCTTGATTGAAAATAATC
TTTCtatataaaattttcataattatgaCACTCCTCGTCTCACCCATGAA
ACAATACTAAACTAACTATTTGTtcaaagtagtcatttcaagaATACAGT
GTAGGTTTAAACCCAGAAGCTTAATTTATATCATAATACTGGAAGTGTTA
ATGATAATAAAAATGTTGTGCCAAGCCGTTTCGACACAATATCTAAATAA
TGTATGCCTTCAAATTGTTAATCACACaatcaatcaaatatttttatgtt
gTAACTGAATATTAAGGTCACCCTTTTAATTTGATTCTAAGTCTCGTTCT
ATTTTTCTCCTTCACACTTTTTCAGGAGGTTATATAATGCGCCATTTTCT
TTCagactttttgagattttttcacgCGACAGGTGTATGTAAGGGCTTGA
ACAAGAACATGAAATGAGGTCTTCCTTCTTATCTAGACCTTTCTTTTCAT
TGCTCCCCGTTTTTTCATCGAATGATTTTCATTCTAATGAAGCATATTCT
TGGttcaaaaaaagacatttttcccatttttcacaattttttttcatttt
cttctttatatTATACGCTTCTTCTatcttttttatggaaaatacaaaaa
aaggaaTATTAAGTTACAACACTATGAAAAATCGCGTAATGTAGCTCCAA
CGCCTGCTCAACAAAAAAATctagtttgtttttcttcttcttgctTGTCG
TATGTGTATTGAACTTAGAATGAGGATAATTTTCCAAGCAAACAGCActt
ttcattaaatgtaaaaGAAGGAAACTTAGAGAGACTTTAGTCACTGGGTC
ACTGGCATAACACATAATGTCTTTGAGAAGACCACTTCTTTTTCATCACA
GATCTGAGGGTGTCCCTAGAATCTACGAAAATGATTTTGCTCTGGAAAAG
GTAAGATGTGACTGATAAACTACAAAGAATCAGATTGTCTCTCTTTCTTT
TTACTTGAGAAGCTTTGCTCCCACTATATTGTTTATGGTTTTGttataat
tttggaaaattgaagaaGCCATTCAACAAGTCTATGAAGTTGATATTTTC
ATATTGTCTttagttcttcttcttcttcttcaatgtTCTTGtgtttaatt
ttcttctcgtttctttcgggggaaaatgaaaaatatttagtcACTCATAT
ATTGGAAGTGAAAAAAAGTATCAAGAGTGTGAAGGAATCACCTGCAGAAA
ATATTGTTGGCtttgcttcttcttcttcttctttcctTGGTTAAGTTTTA
AACATCTGCTGACTACAAAAAAGGActgctttttttttcttattcttgCT
TCTTCTATATATTGTTTCTTCATCTCTTCTACTACTGCTGATTGAAAGTT
CATCAATTCTCCTCCTTTTTTTCTCTTCCACCTTCAAACCCCTTCAATAT
TCACAAAAAGGtcatttcaaaaagaaattattttcaaacccctttttgtt
ttgttgtaatGTACTCAATAATCGACTTGATGGTcagcttttttcatttt
tgtaaggTTGCATTGCATGGCAATTTATCATGTAACGAGAAATCTATACC
ACAATTAAAAAGGATATTTATATACGCTTCTCTTAAACAAGCCGCAAAAT
CAGTCAGATGAAGCATCCTTTATTTTATCTTGTTGTTTCAAAACCAGCAC
ACTTAAATGTTTTGGAAAAAGTACATATGTTGTTTATTATTGGAACTGTC
AGAACGAAAGAAAAAGAAGGTCCttcatttcaaaattccttTATTCCTTA
TCCCTGGCTTCTTCCCATCTTAAAATAGCAAGTCTCTTCCACCGTTCCTT
AAAGTATTGCCGGCAACCGACATTTACATAACCTTTTACTATTTTCCCAC
AAAAATTTCCTCTTCTTTTCAACaatgaaattttaatttcatgTACAACC
ATTAAAAACCCCTTATACtaatttctcttttcaaaaGATTCTTATAAATT
TCTTGCAGTTATATATTACAAATGTATTACAATTATATGTTACAAATCTA
TTACATTTTGTATTCTAGTAATACTTGCAGCAAAAACACGTTGAAAAATA
TCATGCTTTGTCAAAATTACCAGATAATCTCGAATAACAAATCATCCAAT
tgtatttcttcttctttttctgcaGAAAATTTCGATGTCATCCATGGACC
TGACTATCCTTGGAGAAGCACATGGCATGATTACAGACCTGCTAGCTGAC
ACCAGTCTTCCGTTGAACGTCACCGGTACTTTACGTATTGTGGCTGATAT
GATCTCACCTCTTCTTCAGCATAGTTTACATCGACAAGGTGCACCATTGT
TGACTGTACTGGAGAAGACGAAAAACAATGAGGATCATGAGCAAGTTCAA
AACCAACCAGATCTGAAGGATGACACTCCACTCTCACTGAAACAGGTACC
AGAATGTTAAAGCAGCATTTATCAACCTTAACGCTGCGCTAATGGTCACT
TGCCGGTGTCTGGGCTCGATAGCAATGAGTCAgctttcattttctaaatt
ccCATCATTTCAAAAACTGAGTATAAATTGACAGAGAGTCAAACCCAGTT
TCACAAGCTGAGGGGTAATCTATAGGCTGCCTATGAAATAATGTCCTGAG
ATTTCGTAAACTTATTTATGGCCTTTCATTGTACGAGTTACCGAAAAATG
ACTTGATTTTTAAAGGACCACATACATATTCCCATACCATACTCTAAAAG
CCTATTGGATGTAACAGACTTACCACtcacttattcactttgtatTTAGC
GGCTGCAACGTAATTTAGGCGTCAGCTCACGTAGGATGTCATCAAGTTAC
ACGACGACTACATCTGCAACAGGAATGCCAACCATAGATATGGAGTATCA
CCACAAGAAATCTAACGCTAACAAAACAAGTGCAAATAGTACTTCTTCAC
CGACTGCCATCAAAAAGACTTCTAGTAGATCTAAATCGTACGCGGGTGCG
TTAACACCTGCAGAAAGATCCAATCTTTTGAAATCACACTCGCGTTCTTT
TTCACAATCCACTAGTCCAACGCAGAGCGGTCTGCTTAGGAAAGAGTTAG
CCACATCAGATGACACCATTTTTAAAGTGGAAATCGAACGCGGGAAACCG
GTCTTCTTTGAAGGAATGGATGCTTCAGAATCTGAGAACGAAACCATTGA
ATCGGCAGATGAGGACACGGTCAAAGATATCATCTCCTTGAGCGGATGTA
CATCGTccaataataataacaacaatatTAACAACAGGACTAAATTTGTA
TTAGATGAACGTTTAGAAGATGTCAAAGAGACTCCCGAAAAAGAACCAGT
AGATACTCAACCTCATAAAACTCCTTTAGAAACTGTTGAAAATGTCGAAG
ATACGATAAACGAAACGGCGTCGGTTGAACCACCGTCAACGTTAAGCACC
GTAGAAGATAACGTCGAAGATGTTACGTCAGAAAGCGTAACCACGGAAGC
GACAGAAACGACACCCCCTAAACGAAGCTTACGTAAAGTTAGTGATACGA
GCCGTACCTTACGTAGTAACTCAACAGGAAGCGTTAAAAATGAACTTAAG
TCCAGTGATTCTAGTGATAATCTCGTCATTCCAGCGTCCAATCTGATGCG
TCGAAAATCGTCACGTGAGCTACACATGGAGTATGAGATCGCCATATCCA
GAGATATTGATGATATGTTAAGCAAAGTCAAGGAGTGGGATTTCCCAATC
TTCGAACTCAGTGAAAAATGCAACGTTTTAACACAAGTAGGTGTACTTCT
TCTTTTCTGTATTATCTTTCACGATTTTAAAAGCGTCTACAATCCTTAAA
CTTGTTTTTTAGGATTAGTGTGATTTAAATGCGTCAGTCTGATAACATTA
AGGTTAGCCAGAAACTCGAGCAAAAGTTGGACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070216-exon-scaffold_516-1491911889:281305..281497 | TCONS_00070216-exon-scaffold_516-1491911889:281305..281497 | Clytia hemisphaerica | exon |
| TCONS_00070216-exon-scaffold_516-1510915933:281305..281497 | TCONS_00070216-exon-scaffold_516-1510915933:281305..281497 | Clytia hemisphaerica | exon |
| TCONS_00070216-exon-scaffold_516-1575043694:281305..281497 | TCONS_00070216-exon-scaffold_516-1575043694:281305..281497 | Clytia hemisphaerica | exon |
| TCONS_00070216-exon-scaffold_516-1491911889:283780..284049 | TCONS_00070216-exon-scaffold_516-1491911889:283780..284049 | Clytia hemisphaerica | exon |
| TCONS_00070216-exon-scaffold_516-1510915933:283780..284049 | TCONS_00070216-exon-scaffold_516-1510915933:283780..284049 | Clytia hemisphaerica | exon |
| TCONS_00070216-exon-scaffold_516-1575043694:283780..284049 | TCONS_00070216-exon-scaffold_516-1575043694:283780..284049 | Clytia hemisphaerica | exon |
| TCONS_00070216-exon-scaffold_516-1491911889:284404..285539 | TCONS_00070216-exon-scaffold_516-1491911889:284404..285539 | Clytia hemisphaerica | exon |
| TCONS_00070216-exon-scaffold_516-1510915933:284404..285539 | TCONS_00070216-exon-scaffold_516-1510915933:284404..285539 | Clytia hemisphaerica | exon |
| TCONS_00070216-exon-scaffold_516-1575043694:284404..285539 | TCONS_00070216-exon-scaffold_516-1575043694:284404..285539 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_516 | supercontig | scaffold_516:281305..285539 + |
Blast
The following BLAST results are available for this feature:
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