TCONS_00070196 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070196
Unique NameTCONS_00070196
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3858

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070196 ID=TCONS_00070196|Name=TCONS_00070196|organism=Clytia hemisphaerica|type=transcript|length=3858bp
TTAGaatcatataaaaataaaaggtaTACTCAGAATACTCTAAAAAAAGA
ATAACAATTATGGCTTGAAGTTGAAGATACAAAAACTTGTTGTAGGAAAG
GAGAGTAGTGTCTATATCAGGGAGTCCTGCTTGTGTCCTTGAATGGCTGA
CACCCAAGTCACACACGAGGTTGCTGTTGAGCTTAATAACTTTTACAATG
TTGACTTGTTTCAAAGAGGgtACTATCAAGTACGTTGTCATGTGTCAGTT
CcacaaaaattaacaaaattcgTTGAATGCGAGctcaaagaagagaaaga
agGTTCCAAACAAGCACCCTGTCTCTTCAAAGCTTTTGTTGATAAACATT
CTCCAATTGGTATTTCTCGTACTTTTGAAGTATATTACAAACATGAAGAT
GTCCTCATCAAAGATAATTTCATCTTCAAAGTTCATCTCCTCCTTGACGG
AAGCAAGCTTGAATCCTTGTTACCGCAAAAGTTGGAGCTGAACATCGATT
TGTATTTCACCGAATGCTCGCGAAGATATCCCGCAACGCCAAAATCACTC
GAGAAAGTAAGCTCGCAAGTATTGGACATCAATTTAACTTTCGGAAAATC
GTTCCACTCCTCACGCCCtattttgtttgattattttcatttgGGTGCTC
TGAACGTCACCACTCATTCATGCATTACTTCCGTACGCCAACCATGGCTA
GCTTCGTTGAAAGCACAACATCCTATCTGGAGTGGAAAAACCGGAAACGT
TCGAAGCTTCAGTTATAATGCTTTGTTTGGAAAAAGTAACGGGCTGAATC
CTAACCATGAGGTAGATATTCGCCAGAAAGGAACCGCTTCTTTTCTGCAT
CGGAAAATCTGCTTACAGCTATTACGCTTATATGAACAACTTTTAGCTTT
TTATCACAAATGTATTTACTTTTTACCGGACTACGCACAAATGAGATTGA
GCAAAGTAGACATACAGGCCAAGCTAGATGTTTTGAACAACGAGTTTGAC
CGCTTATCTAGAGCTGACGAACTATATTTACGAATGGGAGATGATATGTA
TTTATTAAGCACGGAATTGTCTTTATTGTGGATGCAATTTCTCGAACAGT
TCACATTTGACGACTTTTTACGACAAAGACTAGCAGCCGAGCACCATGAA
GGTCGTGTGCAACATATGCGAGAAGCATTTTTCACTGAAGATCACGCTTG
GCTTTCACTGTGTACCTCGCACGAATTAAGCGCAACTCAACAGACTCGGA
TGGGTAATTTATTGAAGAACTCTCTATATTTCCAACTGATACCACCACTA
GATCTAGCATGCGCAACCCTTGATGGAGACAACACGACAATGCCTATCAT
ATTCGAAGATAAATATATCCCTGGAAAGTCAGAAGAAGATGTTGAGAAAG
AGAAGAGCTCAATGACGGTACAAGAAGCCATTGTGGGTGACGATTTTGTT
GATATGACTGTCAGTGTTGAAGAGAACATGAACAACTTGTCGGTCATCGA
AACTTCATCAACATCATCTTCTTCCGatgatgaaagtgaaagtgaagacA
TACAATCACCAGTCATTTCCGAAGAAGATTTCAACATACGAAGAAGCACC
ATGCTCAAAAAATATTCCAATAGTATCAGTGAAGAATGGGATATGTCTAA
AGATAAGATACGCAAATCTCTACATTTATCACCTGAGACAGATCTCACTG
GTCCTGATTACTGTGAAACACCCGCAGCCCCTGACGAGAAAGATAACCAA
CAACAACCAGAAAAGACTGTCAAAGAGGAACCAAATCCATCCAAAGATGA
ACCGCTAAAAAATCCGAAACTAAACAGCGTACGACGGAAAACACCCTCCA
GCAGTGCAGATAACAGTCcatctcaaaaacaaaaacttctCCTTGATCCT
CCTAGGACTCCAACCAAATCAAAGAACAAAGAGACAGCCGTGTTCTATAC
TAGAATTGATGGCGCGGAAAAGAATTTGACGGCTTCTCAAGGATCAAATG
ATCCAGTCGTTTTGGAAGATCTTGAAGTGCCCGATGAAACGACACAAGGA
GCTAGCGCTGCTCAAAATAACGGAACAGTCATCAACGGCCCTCCTTCACC
CTCGGATCAACACAAACCTAAATTGTGGAGTTGTTTCCCAGCTATAAAGA
CAGGCTCTAAGAGAAACTCTTACAAAATGGTGACACAGTCGCCACCCTAC
ATGCCGGTCTCCAGGGAAAATACTTCAAGATTTCAGCGTGCCAGAGAAAG
TTTACTCAATTCTTTTAACTTCCACGGACACAAATACGGTTTGTTTTCGG
AGGTAGCGAGTGTGACACCGTACTTCAGTGAGCGGATTGTGGCTACCACC
GAAAATGTTCATCTTATTGTTTGTGTTCACGGATTGGATGgaaaCAGTGG
TGATCTGCGTCTTGTGAAATGTTATTTAGAAATGGCTCTTCCGAGAGCGA
ATTTGGATTTCTTGATGTCTGAAGTCAACCAGGAGGATACATTCAATGAT
ATAGATGAAATGACTGGTCGCTTAGTTCGTGAAATATTAAGTTACATACA
AGACCAACGTCTAGATGTCGCTAGAATCAGCTTTGTTGGTCACTCCCTTG
GCAATATCATCATTCGGAACGCTGTAGTTCATTCTTCACTTTTTCAATAT
CGTAACAAATTACACACGTTTCTTTCATTGTCTGGACCTCACCTGGGTAT
GCAGTTCCATACAAGTAATTTGGTGAGCACAGgTATGTGGTTGATACAAA
AATGGAAGAAGGCTGGCTCCTTGGTCCAATTAGCGTTGAACGATTCCACT
GATCCTAGAGAAACTTTCATGTACAGACTAAGCTTAACTAATGGATTTCA
ATATTTCAAGAACGTGCTTCTAGTGAGCTCAGTACAAGACCACTACGTAC
CCTTCCACTCAGCACGTGTGGAGATGAGCAAACAGGCGGTCAAAGATAAT
TCAGAGGGtgGTCGAGTATACAAAGAGATGCTGGACAACATCATGGGTAC
ACTTATGATACAAGAAGAAATCAACATCGTCAAATACAGCGTCTACCACC
CAATGGCGTCTTCCGCCAATACTTTTATCGGTCGTGCCGCCCATATAGCT
ATGTTGGACTCTGAACTGTTCCTTGAAAAATTCATCCTGGTCACGGctaa
taaatattttgcttaaaTTATAATTGCTTGTTTTTGATGTTATGGTTTCT
ATTCCTTACCTAAACAATGAAGAGTGATTTTCAGCAGTTTTTTTTGACAC
TTTGTTATTCCGTTCACTTTTATATTTAGCAACTTGAAACTGTCTCATGC
AGGAAACCTTCaaggtttttttgttttgttttactaATTAAGAAACGACG
AATCAAGTTTAAAAGTTGAAGAGCTGAAGTCTcagaatatatatattttt
gttaaaattcttGCATCAATTTAAGTCCTCATGACTCGTGAAACTCTTGC
aatattaaatttcttttaactttaattttatatacatttttaGACTAGTA
GTGTAAAATAAAGCAATTAATTAATGGGTTCTCTTTTTATAGATTTCGTT
cagtaatatttttattttcaaattttcattatgACTCCCCCTGTGAGTGA
GTACTGggcaaatttaaaaattcaatcatcaaaacaattttaaattcaat
tgaTGGATTTTTAGAGATTATTGGGAATGCCCAAATAAAGatatcaaaaa
cttttctaGCGTGTTCAGGATATTAAATGTtatttaaattattatttttt
gttcattttagttttaccaatttttttaaaagtaataaaaatggtatttt
tatgtcatataattaattttataatttatacAGTAAATACACAAAAAAGA
ACTTTATa
Run BLAST on NCBI

transcript from alignment at scaffold_516:73149..84969+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070196 ID=TCONS_00070196|Name=TCONS_00070196|organism=Clytia hemisphaerica|type=transcript|length=11821bp|location=Sequence derived from alignment at scaffold_516:73149..84969+ (Clytia hemisphaerica)
TTAGaatcatataaaaataaaaggtaTACTCAGAATACTCTAAAAAAAGA ATAACAATTATGGCTTGAAGTTGAAGATACAAAAACTTGTTGTAGGAAAG GAGAGTAGTGTCTATATCAGGTAGTCCTGCTTGTGTCCTTGAATGGCTGA CACCCAAGTCACACACNTATCAGGGAGTCCTGCTTGTGTCCTTGAATGGC TGACACCCAAGTCACACACGAGGTTGCTGTTGAGCTTAATAACTTTTACA ATGTTGACTTGTTTCAAAGAGGGTAAGTTTTCCCATCTCTGTTTTCCATC TATTCATTCCCAAATATTGCTTGTAGCTGTAAGAATCCTAAAATCAATAT CTGCTAATATTTTGCGTAGTAATGTATTGTGGAAACGTGCTTTAGGCAAC TTGGCTCTTTTCAATACTGGACACTTTTAGTCATAATTCAAGAGCACTTG TGAATCAGGTAAGGTTGAAGCACACAGTAACTTCTAATATATAAAAGAtg tattattttgttttaggtACTATCAAGTACGTTGTCATGTGTCAGTTCca caaaaattaacaaaattcgTTGAATGCGAGctcaaagaagagaaagaagg tAAAACAGTTTTTAATGGATTTCTtctagtttcatttttcatctttttga tttcattttcaaattcaggCTTTTCTGTTATTATGCCCACACCATTTTCA CTGATTCTGAGAATTGGTAGTACTGAAATAGTAGCATGTTTAAGTTCTCT TTTCTCCAGTTTTGTTACCAATAGCAACTTGAAATCTATATTTTTTAGTG TTAGCACAGGTACCTGACTAtaataatttttgtaaatttcagGTTCCAAA CAAGCACCCTGTCTCTTCAAAGCTTTTGTTGATAAACATTCTCCAATTGG TATTTCTCGTACTTTTGAAGTATATTACAAACATGAAGATGTCCTCATCA AAGATAATTTCATCTTCAAAGTTCATCTCCTCCTTGACGGAAGCAAGGTT AGTCTTCATAATGGATTTAATAATAGATTCTCCTGTTAGACATACATATT ACAATGATTAACTCATTTCTCACTTTAAAGTGAGAACACTGTTATGGTAT AATTGATCTCTTTGGTCTCTTTAGCTTTTATCTTTGATATAGACAGGCTG TATGTCTTTTGAGACCTGCGTTACTCACTCTTTATAAATTCAGCGCTTTA CAGATTTAAATAACTACTACCTTTGTTTGATCTTGTTGTTATACATATAT GGCCGGTGCGAATTCTAATAAAGTAAGATTTTTATACCATACTTTAGAAA ATTTGTTAGGagagttaaaaaaattaataaaacgACCAAATtgttataaa aacacgccaatcTTCTTAATAGCTTGAATCCTTGTTACCGCAAAAGTTGG AGCTGAACATCGATTTGTATTTCACCGAATGCTCGCGAAGATAGTAAGTT CTCTTCACATGTTTTGTTGTCAAGCATAACGATTATACAGTCAATTAAAT TTATTGAttcaatatgcaaaaatattgcaGGCAGTAAAGTTCTGAtctca ttttcgatttctttttcaGTCCCGCAACGCCAAAATCACTCGAGAAAGTA AGCTCGCAAGTATTGGACATCAATTTAACTTTCGGAAAATCGTTCCACTC CTCACGCCCtattttgtttgattattttcatttgGGTGCTCTGAACGTCA CCACTCATTCATGCATTACTTCCGTACGCCAACCATGGCTAGCTTCGTTG AAAGCACAACATCCTATCTGGAGTGGAAAAACCGGAAACGTTCGAAGCTT CAGTTATAATGCTTTGTTTGGAAAAAGTAACGGGCTGAATCCTAACCATG AGGTAGATATTCGCCAGAAAGGAACCGCTTCTTTTCTGCATCGGAAAATC TGCTTACAGCTATTACGCTTATATGAACAACTTTTAGCTTTTTATCACAA ATGTATTTACTTTTTACCGGACTACGCACAAATGAGATTGAGCAAAGTAG ACATACAGGCCAAGCTAGATGTTTTGAACAACGAGTTTGACCGCTTATCT AGAGCTGACGAACTATATTTACGAATGGGAGATGATATGTATTTATTAAG CACGGAATTGTCTTTATTGTGGATGCAATTTCTCGAACAGTTCACATTTG ACGACTTTTTACGACAAAGACTAGCAGCCGAGCACCATGAAGGTCGTGTG CAACATATGCGAGAAGCATTTTTCACTGAAGATCACGCTTGGCTTTCACT GTGTACCTCGCACGAATTAAGCGCAACTCAACAGACTCGGATGGGTAATT TATTGAAGAACTCTCTATATTTCCAACTGATACCACCACTAGATCTAGCA TGCGCAACCCTTGATGGAGACAACACGACAATGCCTATCATATTCGAAGA TAAATATATCCCTGGAAAGTCAGAAGAAGGTTGGTAAAGCTTCTTGAAAT GGTTTCGAAAAGTTTCGAATGCTTATCATTATTTCAAAATGCTTATGTCT ATAGGCCATTTCATGTTCCTTACCTTCAGTGCGGGAGGTCCGAGATCAAT TCTCACAGGGATACTACGTTTCGTAATATTAAATTGTCCTATAGTAGGAT CCGTTCCCTAATGAGGAGGGTTCATATCGTCAATCAGGACTAATTGTGCT TCCCATTGGTTGGACACAAAAGCCTTCAAACTTCAAACGTTTTCCTGATT ACTTATCATTTCGAACGTGAAATGACATAGGGTCTCGCTGGGTCtcgcat tttcaaatttataaaatctttcttttatgtttttgctTAGATGTTGAGAA AGAGAAGAGCTCAATGACGGTACAAGAAGCCATTGTGGGTGACGATTTTG TTGATATGACTGTCAGTGTTGAAGGTAgggtgttttttttacttttgcaa TGTTGCATTgttttctttcaactttttgtctgtcgattggtagtgtgaag gtttcgatccacagacttgcaccgcaatggactgtgtttGAATCCCAATT ACTCCGAGGCAGAGTGTTAGGGAAACattggtgatagactctctaccttc acacattttgtcactttttccACTTTCAGAGAACATGAACAACTTGTCGG TCATCGAAACTTCATCAACATCATCTTCTTCCGatgatgaaagtgaaagt gaagacATACAATCACCAGTCATTTCCGAAGAAGATTTCAACATACGAAG AAGCACCATGCTCAAAAAATATTCCAATAGTATCAGTGAAGAATGGGATA TGTCTAAAGATAAGATACGCAAATCTCTACATTTATCACCTGAGACAGAT CTCACTGGTCCTGATTACTGTGAAACACCCGCAGCCCCTGACGAGAAAGA TAACCAACAACAACCAGAAAAGACTGTCAAAGAGGAACCAAATCCATCCA AAGATGAACCGCTAAAAAATCCGAAACTAAACAGCGTACGACGGAAAACA CCCTCCAGCAGTGCAGATAACAGTCcatctcaaaaacaaaaacttctCCT TGATCCTCCTAGGACTCCAACCAAATCAAAGAACAAAGAGACAGCCGTGT TCTATACTAGAATTGATGGCGCGGAAAAGAATTTGACGGCTTCTCAAGGA TCAAATGATCCAGTCGTTTTGGAAGATCTTGAAGTGCCCGATGAAACGAC ACAAGGAGCTAGCGCTGCTCAAAATAACGGAACAGTCATCAACGGCCCTC CTTCACCCTCGGATCAACACAAACCTAAATTGTGGAGTTGTTTCCCAGCT ATAAAGACAGGCTCTAAGAGAAACTCTTACAAAATGGTGACACAGTCGCC ACCCTACATGCCGGTCTCCAGGGAAAATACTTCAAGGTTTGTTGatagtt ttgatttgttttgagaaGCATCATTTCACAGGCTGTAGTCATTGTGGCCt tttgttttaaaggttttggaAATGATTCATTTTATACTAACTCAGAATTA ACTTATTACACATTAGTTGAATCATCTTTCATCTTTCATGAGCTTTTCAA TAAGTATTTACGAGTGCATTGATTGCATGGCTCATAATCTGTTAAAGCAT AGGTTCGCTAGAAATCAAATTGCACTCGAATCTCCATTTCATTTGCACCT AACACATTAAATTTCATTTCACATCCAGATTTCAGCGTGCCAGAGAAAGT TTACTCAATTCTTTTAACTTCCACGGACACAAATACGGGTATGTTTACAC TTAACATGTAATGGGTTTGCTATCAAAATGTTTCTCATTCTCATTCTGCA TTGAAATCCACCCAACTATTTAGAGTGACATTTCTGCATGCATGAATTTT TTACTAGAAAGAAAAGAATTAGTTTCAACCTTAACAGGTACTTNttttga aaattggtgaaaaatttatcaatttcgggatttagggctttttaggatcc tttatccttcctgaacataccctgaaaatttcaagaccGTAGCATAAATA TCTGCCGATATATTGGGTTTCTTATGAGCCCTGCTATACAATTTTCTCCT TAGCAACGGGAAATCGCATCCGTTGCTAGGGCCTCATTTCCGTATGGCTG TTCTAAACATAGCATCATGACATACCaaatgaaagctctttttacgccct tttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattgtggaaagtttcatt gaaaaatatttactacttcacaagatataacaaaaagtttaaaaaatgac atttcaaatttctcatatgactacccccttaacATGTAATGGGTTCGCTA TCAAAATGTTTCTCATTCTCATTCTGCATTGAAATCCACCCAACTATTTA GAGTGACATTTCTGCATGCATGAATTTTTTACTAGAAAGAAAAGAATTAG TTTCAACCTTAACTGGTACTTTTAGAATCGAATCGTTTCATTCTTCCTGA CCGCTTGTAAAGAAATGGTATAGGTATCTTTTGTCCCATAATAATAGCCA CATCAATTCGCATGACTTTAAAGAACAACCATTTCTTAAACCTCTTCTCC TTTAGTTTGTTTTCGGAGGTAGCGAGTGTGACACCGTACTTCAGTGAGCG GATTGTGGCTACCACCGAAAATGTTCATCTTATTGTTTGTGTTCACGGAT TGGATGGTAAGCAATACAGTATTCAATCCTCTAATACATCTTCCATGTAC TACCCCATATCGTTCAAAAAAGCTCTCAAACTCTTCTACTATTAGCAATT GTAGAGGACTTTTTCTCTAGGAGACAGGAAATATTAGCTCTAAATTTATT ACTTCATGCACTGCCTCGTTTTCGTTCATTCTTTTTACTCTCTACGTtta taggccttttcataattGAATGCCAAAGGAAAATCAAAACTTGACTTTAT TGAAAAACGTTTCACTTTTATTCTTCGCGAGATATAACTATCATGGCAAT TTTCTGAAAACGAGGCAGTTTTTGTTTGTGACGTAAGGTCTATTATaaac taatttttattttttaggaaaCAGTGGTGATCTGCGTCTTGTGAAATGTT ATTTAGAAATGGCTCTTCCGAGAGCGAATTTGGATTTCTTGATGTCTGAA GTCAACCAGGTACCGTTTTCTAACAACTTGATTCTAATAGTGTCGAATCT TTATCAAATAGCAAGGTTGCTATCaaatataatcaaataataCGAAAAAA CCAAAGTTAAGTGGATCGATTATTTTTCTAGTACTGTACTGACTCAGCTC TAGTTTAAACTGTAAAGTACTTCTTTTTCAATCTTTCTTACATTCATAAC ACTGAGCGTCTTATGAAGAATTGATTCACTCATTTTCTTCATCTCAGGAG GATACATTCAATGATATAGATGAAATGACTGGTCGCTTAGTTCGTGAAAT ATTAAGTTACATACAAGACCAACGTCTAGATGTCGCTAGAATCAGGTAAC CATCAAATATCAATAATATACCTCCTCAGGCTAAGTATGACAAGAATTTA AAAAGTACCCAGACACTACTAAATTTATTGATTTGGAATTagcaattaaa aaaatatatatacatcTTTCTTTATAATTTCTGATTGACTAGTTGGACAA AACCTACTATTCTCCGAATTCGTCCGAAGCTCGTTTGTTTGATCCAGTTT GTCCACTTTCGCCCCATCAGTTAAAAAACTGGTTCAATCTTTTGTAGCTT TGTTGGTCACTCCCTTGGCAATATCATCATTCGGAACGCTGTAGTTCATT CTTCACTTTTTCAATATCGTAACAAATTACACACGTTTCTTTCATTGTCT GGACCTCACCTGGGTATGCAGTTCCATACAAGTAATTTGGTGAGCACAGG TATGTACGTCCTTCCTATTATCCTTACTAAAGGGGTTTGTGGAAGTGTGG CGCTTCCGCAGTTTTTTTTCGTTGACGTTGGCGGACGAAGACTTGATTTA CGGCTAATTTAGCGTTCGAGGCTTTATCCAGCGTTTGTTCTTCcatttca ttcatttcattGAACTTTATTTccatttcattaattttttgtaTCTTCTC TTCCTAGCTTTTTAATAGAAAGCAAACGTGTAACCTCTAGATCTTCTGAT TTTATCAATTCAAGAAAGCTGTGTAGGCCAAATTTCAAACGGTTGAGGCT TCTAACAAACGATATTTGCTCAAGAATAGTTGTATTTTTATCACCATAAA GTCGAAATTgtgatttttatcttttaggTATGTGGTTGATACAAAAATGG AAGAAGGCTGGCTCCTTGGTCCAATTAGCGTTGAACGATTCCACTGATCC TAGAGAAACTTTCATGTACAGACTAAGCTTAACTAATGGTAAGTAAGCCC ATCAAAGGAGACTGTTTTATCTTCAACAGATTGACAACAGCTTTATAACT AAGCTCTTTCCAATAATAAAAATGTGTTAGAAATGGCTTCTTATTATCTT TGTTGGATTGATAGCATACATGTAAAGTCTCCATCTGAAAGAAAGATGAT TGGTGATTAAGTCGAAAGCATTTTAAAGTTCTTTCGGATGGGTGAAGCTT TCTGCCTGGCTTGACCTTGTCATCGGAACTATCTTTACAAAATGTTGTTC TATTATTCTTTAGGATTTCAATATTTCAAGAACGTGCTTCTAGTGAGCTC AGTACAAGACCACTACGTACCCTTCCACTCAGCACGTGTGGAGATGAGCA AACAGGCGGTCAAAGATAATTCAGAGGGtggtaagaaatttttgcgTTCT ATACATTGTTCTTCTGTTATTAAGCTTAAACCTTTGTTTTAATGCTAAAG ATTGGAAGGGAAGTTTAAAGAAGTTTAGaggagttcataagaagtttaga ggagttcataagaagttTGCTCTATTTATGAAATTAACACTGGAAGACtc tttatgaaaaggtctattcttgtCCAATCCAAATTTTTTAGAGTGAAGGA TTTTAGGATTCCccgttttttggacctaccccggtggaggtcctataaat taacctgtgtttgttcgtccgttcgtctgttaccaacttttctcaggatt gaatcataggaatcttctgatttttggtacaaaggtgcaaaatggtggtg gccaaaatgtgacggagcccgattttcgaaaataattttttttgggcaaa tttgggccaaaaacggctaaaaaacgggttttttggactttgtgaaaaat tggatcattaatttttctgaTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNttgcaaaaaaattttgttggctca aaaaaagcatgtttatctataagaatcactattaataagcatacatcaat gttcttagtcaaattacccaatttttttatgagatagatgtttttttacc tcatgagggcttacttttagagagtatgtgtgtttagacatgaaattttg gttgcttagcgtattcttatagaaaaactggccaaattcgatatgtttat aagcacattatcaattacttaggtattagtttttctcgagattggctctt tcattctttatgattttttgcacaaagatgcataactaccgggtgaccca cgaaaaagttcggacggttTTCGTTGGCTAGGGTctgaaataaaagtaat ataaacttaatcttttttttatagatagaggatgctctaacttaaacttt gagctattactttttaaatttggttcagcGGTTCTTCATTtgtgagcttt taaagtcaaaattcaattatcggaaagtgcaaaaacacgtcaaaaatgag atatcaaattataattgttttttttatctttaacaTTGTGTTTTTCGAGT GTGCTGATGTTTTAAGACCTCGTTGATTAGTGTTGTAGTTAATTAAAGtc tgtaaaataataaattaacaacgaagtagatttatataaatttattctaa atatttttatcaaaaatattttgcaaataggCAAAATTTGCATCTTTATG AAAATGTCGCGTCTTATGAAAGAACAGAGAGTGTGGGTTTGCCTGGAATA TGCTAGAAAGTGTATGGTGGTGGTTCTTTTCTGAACGAATAACTTGTTTA TAACGATTTAACGACCTTGCTTGattgataataaaacaatttgatacctc ttttttgacgtaatttcgctctttccgaaaagtgaattttgactttaaaa gctcataagtagggaACTTGTgggtcaattttaaaaagtaatagctcaaa ctttaagttagaatatctactttctacatattaaaatttcaagcactttg agacatttgttcggcctcgagACGCCGAAAactgtccgaactttttcgtg ggtcacccggtataaaccctcgaatgtgacggagcccgattttcgaaaaa aaatgtttttgggcaaatttggcccaaaaaaacggctaaaaaaagggttt attggactttgtgaaatgttggatcattgtttttttcttgtttttttgca tgaaagtaggtaaaagatggttcaagcagatttttgtaaaacaataattt tcagctcaaaaaacgcatctttatttataagaataagaatcactattaat aagcatacatcaatgttcttagccaaagtactaaattttttgatgagata gatgttttttttgctcacgaagtcttgaatatgaaagattatttcaagag catgaaattttggtttcgaaacgtttttttatatgaaacaaacgactaat tttaatagatcgtcactatttgtgttctgaatgattgtttaacggtcatg ctcacatagatatcaattatatttgttaaatgcataaccaggtaggtcca taaaagtatcacttgttagtAGCGACTTTGTTAGTGTGTGCCGTGTCTTT TGTAGTGGAGAGGGCTAGTTCTTTATTTGTCTTGATTGGTTAGCCTGAAA ACCATCGCATTTCTCAAAATATAGATATGTTTGAAcccaaaaacagtttc aaccctTTTTCACCGTCAAGGTGGTTATACCTCATGCCATATACTGTCTG GACTATGATCCTGACTGACAAAGAACGACGGTTAATTAGGCCTTCACTGT CTTTGATTTTGTATATCGAAACTACGGTTTATTTCATATCGTTTCAGTTA CTCATCCAACCTCAAAATCGTAAATACTTAAACTCGCTGGTGTGTCCCTT TGAGAGGAAAGgggaaaaggttgaaaatgatattttatttaCAAGAGTGA AACTCTTCTTAAACCTCAACAACTTCCGTTACTATGTTAAATGTCTGAAA GTATATTTTCTAATGATCAATAGGTCGAGTATACAAAGAGATGCTGGACA ACATCATGGGTACACTTATGATACAAGAAGAAATCAACATCGTCAAATAC AGCGTCTACCACCCAATGGCGTCTTCCGCCAATACTTTTATCGGTCGTGC CGCCCATATAGCTATGTTGGACTCTGAACTGTTCCTTGAAAAATTCATCC TGGTCACGGctaataaatattttgcttaaaTTATAATTGCTTGTTTTTGA TGTTATGGTTTCTATTCCTTACCTAAACAATGAAGAGTGATTTTCAGCAG TTTTTTTTGACACTTTGTTATTCCGTTCACTTTTATATTTAGCAACTTGA AACTGTCTCATGCAGGAAACCTTCaaggtttttttgttttgttttactaA TTAAGAAACGACGAATCAAGTTTAAAAGTTGAAGAGCTGAAGTCTcagaa tatatatatttttgttaaaattcttGCATCAATTTAAGTCCTCATGACTC GTGAAACTCTTGCaatattaaatttcttttaactttaattttatatacat ttttaGACTAGTAGTGTAAAATAAAGCAATTAATTAATGGGTTCTCTTTT TATAGATTTCGTTcagtaatatttttattttcaaattttcattatgACTC CCCCTGTGAGTGAGTACTGggcaaatttaaaaattcaatcatcaaaacaa ttttaaattcaattgaTGGATTTTTAGAGATTATTGGGAATGCCCAAATA AAGatatcaaaaacttttctaGCGTGTTCAGGATATTAAATGTtatttaa attattattttttgttcattttagttttaccaatttttttaaaagtaata aaaatggtatttttatgtcatataattaattttataatttatacAGTAAA TACACAAAAAAGAACTTTATa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043722XLOC_043722Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070196-exon-scaffold_516-1491911889:73149..73268TCONS_00070196-exon-scaffold_516-1491911889:73149..73268Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1510915933:73149..73268TCONS_00070196-exon-scaffold_516-1510915933:73149..73268Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1575043694:73149..73268TCONS_00070196-exon-scaffold_516-1575043694:73149..73268Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1491911889:73322..73420TCONS_00070196-exon-scaffold_516-1491911889:73322..73420Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1510915933:73322..73420TCONS_00070196-exon-scaffold_516-1510915933:73322..73420Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1575043694:73322..73420TCONS_00070196-exon-scaffold_516-1575043694:73322..73420Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1491911889:73665..73747TCONS_00070196-exon-scaffold_516-1491911889:73665..73747Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1510915933:73665..73747TCONS_00070196-exon-scaffold_516-1510915933:73665..73747Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1575043694:73665..73747TCONS_00070196-exon-scaffold_516-1575043694:73665..73747Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1491911889:73991..74145TCONS_00070196-exon-scaffold_516-1491911889:73991..74145Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1510915933:73991..74145TCONS_00070196-exon-scaffold_516-1510915933:73991..74145Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1575043694:73991..74145TCONS_00070196-exon-scaffold_516-1575043694:73991..74145Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1491911889:74521..74591TCONS_00070196-exon-scaffold_516-1491911889:74521..74591Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1510915933:74521..74591TCONS_00070196-exon-scaffold_516-1510915933:74521..74591Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1575043694:74521..74591TCONS_00070196-exon-scaffold_516-1575043694:74521..74591Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1491911889:74718..75577TCONS_00070196-exon-scaffold_516-1491911889:74718..75577Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1510915933:74718..75577TCONS_00070196-exon-scaffold_516-1510915933:74718..75577Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1575043694:74718..75577TCONS_00070196-exon-scaffold_516-1575043694:74718..75577Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1491911889:75939..76022TCONS_00070196-exon-scaffold_516-1491911889:75939..76022Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1510915933:75939..76022TCONS_00070196-exon-scaffold_516-1510915933:75939..76022Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1575043694:75939..76022TCONS_00070196-exon-scaffold_516-1575043694:75939..76022Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1491911889:76228..76984TCONS_00070196-exon-scaffold_516-1491911889:76228..76984Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1510915933:76228..76984TCONS_00070196-exon-scaffold_516-1510915933:76228..76984Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1575043694:76228..76984TCONS_00070196-exon-scaffold_516-1575043694:76228..76984Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1491911889:77277..77336TCONS_00070196-exon-scaffold_516-1491911889:77277..77336Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1510915933:77277..77336TCONS_00070196-exon-scaffold_516-1510915933:77277..77336Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1575043694:77277..77336TCONS_00070196-exon-scaffold_516-1575043694:77277..77336Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1491911889:79154..79254TCONS_00070196-exon-scaffold_516-1491911889:79154..79254Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1510915933:79154..79254TCONS_00070196-exon-scaffold_516-1510915933:79154..79254Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1575043694:79154..79254TCONS_00070196-exon-scaffold_516-1575043694:79154..79254Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1491911889:79616..79707TCONS_00070196-exon-scaffold_516-1491911889:79616..79707Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1510915933:79616..79707TCONS_00070196-exon-scaffold_516-1510915933:79616..79707Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1575043694:79616..79707TCONS_00070196-exon-scaffold_516-1575043694:79616..79707Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1491911889:79946..80043TCONS_00070196-exon-scaffold_516-1491911889:79946..80043Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1510915933:79946..80043TCONS_00070196-exon-scaffold_516-1510915933:79946..80043Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1575043694:79946..80043TCONS_00070196-exon-scaffold_516-1575043694:79946..80043Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1491911889:80296..80447TCONS_00070196-exon-scaffold_516-1491911889:80296..80447Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1510915933:80296..80447TCONS_00070196-exon-scaffold_516-1510915933:80296..80447Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1575043694:80296..80447TCONS_00070196-exon-scaffold_516-1575043694:80296..80447Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1491911889:80826..80936TCONS_00070196-exon-scaffold_516-1491911889:80826..80936Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1510915933:80826..80936TCONS_00070196-exon-scaffold_516-1510915933:80826..80936Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1575043694:80826..80936TCONS_00070196-exon-scaffold_516-1575043694:80826..80936Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1491911889:81212..81328TCONS_00070196-exon-scaffold_516-1491911889:81212..81328Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1510915933:81212..81328TCONS_00070196-exon-scaffold_516-1510915933:81212..81328Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1575043694:81212..81328TCONS_00070196-exon-scaffold_516-1575043694:81212..81328Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1491911889:84072..84969TCONS_00070196-exon-scaffold_516-1491911889:84072..84969Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1510915933:84072..84969TCONS_00070196-exon-scaffold_516-1510915933:84072..84969Clytia hemisphaericaexon
TCONS_00070196-exon-scaffold_516-1575043694:84072..84969TCONS_00070196-exon-scaffold_516-1575043694:84072..84969Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:73149..84969 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.12925 2.94134e-07 0.306357 1.21163 19.4967 14.8367 15.3874 16.6055 0.000251623 2.36522e-05 0.00069875 5.01802e-06 6.97187e-06 7.57446e-06 9.05558e-05 0.000534437 9.73164e-05 0.000901746 0.00245107 1.29093e-06 0.030497 0.0102295 0.00170085 0.00267616 8.79462 9.35823 0.007045 0.0232721 0.15852 0.0235511
Blast
BLAST of TCONS_00070196 vs. Swiss-Prot (Human)
Match: F135A (Protein FAM135A OS=Homo sapiens GN=FAM135A PE=1 SV=2)

HSP 1 Score: 360.147 bits (923), Expect = 5.891e-103
Identity = 191/412 (46.36%), Postives = 260/412 (63.11%), Query Frame = 2
Query: 1937 AVFYTRIDGAEKNLTASQGSNDPVVLEDLEVPDETTQGASAAQNNGTVINGPPSPSDQH---KPKLWSCFPAIKTGSKRNSYKMVTQSPPYMPVSRENTSRFQRARESLLNSFNFHGHKYGLFSEVASVTPYFS-ERIVATTENVHLIVCVHGLDGNSGDLRLVKCYLEMALPRANLDFLMSEVNQEDTFNDIDEMTGRLVREILSYIQDQRLDVARISFVGHSLGNIIIRNAVVHSSLFQYRNKLHTFLSLSGPHLGMQFHTSNLVSTGMWLIQKWKKAGSLVQLALNDSTDPRETFMYRLSLTNGFQYFKNVLLVSSVQDHYVPFHSARVEMSKQAVKDNSEGGRVYKEMLDNIMGTLMIQEEINIVKYSVYHPMASSANTFIGRAAHIAMLDSELFLEKFILVTANKYF 3160
            A + +R +  E+ LT S+  N   + + + +P   T G          ++ P +P +     K    S F AI       SY   +    Y    +     F +A+E L       G  Y     +AS  PYFS E    + + VHLIVCVHGLDGNS DLRLVK Y+E+ LP   +DFLMSE NQ DTF D D MT RL+ EI+ YIQ   L V++ISF+GHSLGN+IIR+ +       Y NKLHTFLSLSGPHLG  +++S LV+TG+W +QKWKK+GSL+QL   D +DPR+TF+Y+LS   G  YFKNV+LV S+QD YVP+HSAR+EM K A+KD  + G++Y EM+ N++  ++  ++ N+V+Y+V + + ++A++ IGRAAHIA+LDSE+FLEKF LV A KYF
Sbjct: 1114 AHYTSRDELMEERLTKSEKINSDYLRDGINMPTVCTSGC---------LSFPSAPRESPCNVKYSSKSKFDAITKQPSSTSYNFTSSISWYESSPKPQIQAFLQAKEEL-KLLKLPGFMYSEVPLLASSVPYFSVEEEDGSEDGVHLIVCVHGLDGNSADLRLVKTYIELGLPGGRIDFLMSERNQNDTFADFDSMTDRLLDEIIQYIQIYSLTVSKISFIGHSLGNLIIRSVLTRPRFKYYLNKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFKNVVLVGSLQDRYVPYHSARIEMCKTALKDK-QSGQIYSEMIHNLLRPVLQSKDCNLVRYNVINALPNTADSLIGRAAHIAVLDSEIFLEKFFLVAALKYF 1514          

HSP 2 Score: 195.667 bits (496), Expect = 2.366e-50
Identity = 135/423 (31.91%), Postives = 220/423 (52.01%), Query Frame = 2
Query:  143 MADTQVTHEVAVELNNFYNVDLFQRGYYQVRCHVSVPQKLTKFVECELKEEKEGSKQAPCLFKAF-VDKHSPIGISRTFEVYYKHEDVLIKDNFIFKVHXXXXXXXXXXXXPQ-KLELNIDLYFTECSRRYPATP-KSLEKVSSQVLDINLTFGKSFHSSRPILFDYFHLGALNVTTHSCITSVRQPWLASLKAQHPIWSGKTGNVRSFSYNALFGKSNGLNPNHEVDIRQKGTA-----SFLHRK------ICXXXXXXXXXXXAFYHKCIYFLPDYAQMRLSKVDIQAKLDVLNNEFDRLSRADELYLRMGDDMYLLSTELSLLWMQFLEQFTFDDFLRQRLAAEHHEGRVQHMREAFFTEDHAWLSLCTSHELSATQQTRMGNLLKNSLYFQLIPPLDLACATLDGDNTTMPIIFEDKYI 1369
            M + Q   E +VELN FYNVDLFQRG+YQ+R  + +P ++   VE  L         A  +  AF    H  +  S+TF++ YK+E+V++ D  IFKV +LLD  K+E  L +    L++DL+FT+    Y A    +L+ +SS+ L ++ +  +  H    ++FDYFHL  ++VT H+ + ++ QP ++  +     W  +    ++        +S     N+   +   G +     SFLH        +C  LL  ++ L +++      +P   ++ L ++D++A+L  L  E  ++   DEL   +  ++  L + L  LW QFLE  T  + LR  LA EHH  RV+   EAFF  +H   +     EL A    +M   +KN+ +   +PPL + C+ LDGD  ++PIIFED+Y+
Sbjct:    1 MTEVQAMVEFSVELNKFYNVDLFQRGFYQIRASMKIPSRIPHRVEASLL-------HATGMTLAFPASVHDSLICSKTFQILYKNEEVVLNDVMIFKVKMLLDERKIEETLEEMNFLLSLDLHFTD--GDYSADDLNALQLISSRTLKLHFSPHRGLHHHVNVMFDYFHLSVVSVTVHASLVALHQPLISFPRPVKTTWLNRNAPAQNKDSVIPTLESVVFGINYTKQLSPDGCSFIIADSFLHHAYRFHYTLCATLLLAFKGLHSYFITVTEEIPSCQKLELEEMDVEARLTELCEEVKKIENPDELAELINMNLAQLCSLLMALWGQFLEVITLHEELRILLAQEHHTLRVRRFSEAFFCFEHPREAAIAYQELHAQSHLQMCTAIKNTSFCSSLPPLPIECSELDGDLNSLPIIFEDRYL 414          
The following BLAST results are available for this feature:
BLAST of TCONS_00070196 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
F135A5.891e-10346.36Protein FAM135A OS=Homo sapiens GN=FAM135A PE=1 SV... [more]
back to top