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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070195 ID=TCONS_00070195|Name=TCONS_00070195|organism=Clytia hemisphaerica|type=transcript|length=1350bp
CTGTAAATTATTGGAAGTTATTTGATACTATAATTCTGGTGATTCTATCG
CTCGAAACGTTGTATTAGTTTTCAACCTCTTTGTAATACAATACCTTTTG
GTGGAACCGAAATTCTGAATTAAAGCTTGACTGATCATTGTATGATTACT
GATATTTGGCTTGGAAGGTTTTTATCCTCTCTTCATAGAGTGCtcgataa
ttattttcataACCAAAGATGGCATCGAAACAAGGGGTTGTAGACTTTAT
ATCTGGTTCAAATGGAGGAATCGCATGTGTTATGGTTGGTCAACCTTTAG
ATACagttaaaatcaaaatgcaGACTTATTCGTCtgtttataagaacagt
ttttcatgtttttgcaAAGTTTTACAAAGCGATGGAGCTCGTGGTTTATA
TGCTGGCTCCTTGCCAGCTATTGTGTCAGATGTTTTCGGACAAGCTGCGT
TATTTTTATTCTATGGACAATGTCAAAATGTTGTTGCTTCTTTGGCGAAC
GTTGATAATATAGACAATTTAACGATAGCACAACGAGGTTATGCTGGCTC
TCTATGTTCTTTCTTTTATGGTGCGGTTTTTTGTCCGCCAGATTTAGTGA
AATGTCGTATGCAAATTGCAAGAGAAATACATGGCTCTGCTAATAAAATA
ACGATGCGAAGTACCATCATGGACGTGTTTCGAAAAGAAGGTGTACTCGG
TTTCTATCAAGGTCTATCGGCGCTTTTATTACGAGAAGTTCCTGCTAATT
TCTTTTACTTTGCTGGATACGAAGGGGTGAAGAAGTTGTTACAAACTCCT
GAAGAACAAGAAGCAGGCGCCAAGACGGCTGCTTGGAAATTGATCGTTTC
AGGAGGTGTCGGTGGTATGACGTATTGGACTTCCATTTATCCAGTGGATG
TCATGAAAACCAAACTACAGATTTGGAACGGCGAAGGAAAGAAACCGACT
CTAACTCAAATGGCACGCCAAACGTTTCAACAAGAAGGTATTGGTTCATT
TTATCGAGGCATTGGGCCAACACTTCTTCGATCTTTCCCTGCAAACGCCG
CCATCTTCTTAACTTACGAGTATACTAAAGACTTCTTATGGAAAGTGACT
TAACATTCGCCGGCGTGTGCTGTGATCTTTTtgtttaaattctaaaataa
atatttatcaggaaatattccaatttttaattaccttatcggccaaaact
tagtcggcccttagtgactaaattttgacgaggtgactaaaattagggcc
gactaatcgactaagttttggctgaTAAGGTAGCAAACGAATATGATATT
ttattaaaacaattttgtacAGAATTTTAGTAATATTACGCAgatcaaaa Run BLAST on NCBI transcript from alignment at scaffold_516:41371..43732+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070195 ID=TCONS_00070195|Name=TCONS_00070195|organism=Clytia hemisphaerica|type=transcript|length=2362bp|location=Sequence derived from alignment at scaffold_516:41371..43732+ (Clytia hemisphaerica)
CTGTAAATTATTGGAAGTTATTTGATACTATAATTCTGGTGATTCTATCG
CTCGAAACGTTGTATTAGTTTTCAACCTCTTTGTAATACAATACCTTTTG
GTGGAACCGAAATTCTGAATTAAAGCTTGACTGATCATTGTATGATTACT
GATATTTGGCTTGGAAGGTTTTTATCCTCTCTTCATAGAGTGCtcgataa
ttattttcataACCAAAGATGGCATCGAAACAAGGGGTTGTAGACTTTAT
ATCTGGTTCAAATGGAGGAATCGCATGTGTTATGGTTGGTCAACCTTTAG
ATACagttaaaatcaaaatgcaGACTTATTCGTCtgtttataagaacagt
ttttcatgtttttgcaAAGTTTTACAAAGCGATGGAGCTCGTGGTTTATA
TGCTGGCTCCTTGCCAGCTATTGTGTCAGATGTTTTCGGACAAGCTGCGT
TATTTTTATTCTATGGACAATGTCAAAATGTTGTTGCTTCTTTGGCGAAC
GTTGATAATATAGACAATTTAACGATAGCACAACGAGGTTATGCTGGCTC
TCTATGTTCTTTCTTTTATGGTGCGGTTTTTTGTCCGCCAGATTTAGTGA
AATGTCGTATGCAAATTGCAAGAGAAATACATGGCTCTGCTAATAAAATG
TAAGTGACGAATGAAGACTGCTAGAAAGTCTAACTGACCCAGTTATCTAT
TTTTCTTCTGATGTCATGTCATGGTAAAGAAATGAAATAGAAAATGGAGA
ATATTTCGCAATCTGATTAAAAATATTGATAGTCATGGGTTAAAATATGT
CCAAGATGGAATAAAAAAACAAGGCTGTGCTCATTACATATTGAGATTAT
TATAGAAGTGAATAAAAAAAGCAGTTTCATACCCTGattaaatttttgat
aaaatatccCACTATCCAGTACCGAATCGGGGAAATCGAGAAAACTTCAA
ATGAACCTTAAGTTGAAGGGACAATCAATAATGAAacttatctttatttt
tctctcAGAACGATGCGAAGTACCATCATGGACGTGTTTCGAAAAGAAGG
TGTACTCGGTTTCTATCAAGGTCTATCGGCGCTTTTATTACGAGAAGTTC
CTGCTAATTTCTTTTACTTTGCTGGATACGAAGGGGTGAAGAAGTTGTTA
CAAACTCCTGAAGAACAAGAAGCAGGCGCCAAGACGGCTGCTTGGAAATT
GATCGTTTCAGGAGGTGTCGGTGGTATGACGTATTGGACTTCCATTTATC
CAGTGGATGTCATGAAAACCAAACTACAGGTAAATAAACTATTTTAGGAA
GGGGTcttataaacccttgaatgctatgagcttttctcgggattagctca
tttgattttttgcaaCGACAATTATGCAACTTAGTAACTCTCAAAATATA
AACAgaggccaatttttgaaaataaactttttgtgCGGTTTCCAGATCCG
GTTATGTCCCAGAAGAATCATTTGTTTTtcctgatttcttttttttcgag
tTAAATATTTTCTGCCGCTCTAGAGTAATGAGAATCTTAGAGTGATACTT
GCTCGGTTTTTTATGTATGCCAGAATTCTCATTatgtaatcttttctttt
ttgcaaaTCTTACAGATTTGGAACGGCGAAGGAAAGAAACCGACTCTAAC
TCAAATGGCACGCCAAACGTTTCAACAAGAAGGTATTTAtctcgtttttt
gtttttcacgaCGAAtgtaaaagaattttaaaatcagcATTTCAAGCAAA
ATAGGCGTACAGTAAAACCCTTAACGTTAAAACCTGTTAAAACCTAAAAA
AGAGATCGTCTAGTGTAATTTAAAATTCCAGTTCTCTCTAAATACGAAAG
ACTAAGACCTACAgtaaactctcgcttattcaaatctctctgtaattcaa
gTAAATAATATTGTCGCTATGATTGACGAGATTCAACTATAGTCAAAGAC
CGCCTTTGAATTACACATTTACTTGGATAACATTTTCATCACTTTTCAGG
TATTGGTTCATTTTATCGAGGCATTGGGCCAACACTTCTTCGATCTTTCC
CTGCAAACGCCGCCATCTTCTTAACTTACGAGTATACTAAAGACTTCTTA
TGGAAAGTGACTTAACATTCGCCGGCGTGTGCTGTGATCTTTTtgtttaa
attctaaaataaatatttatcaggaaatattccaatttttaattacctta
tcggccaaaacttagtcggcccttagtgactaaattttgacgaggtgact
aaaattagggccgactaatcgactaagttttggctgaTAAGGTAGCAAAC
GAATATGATATTttattaaaacaattttgtacAGAATTTTAGTAATATTA
CGCAgatcaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070195-exon-scaffold_516-1491911889:41371..42019 | TCONS_00070195-exon-scaffold_516-1491911889:41371..42019 | Clytia hemisphaerica | exon |
| TCONS_00070195-exon-scaffold_516-1510915933:41371..42019 | TCONS_00070195-exon-scaffold_516-1510915933:41371..42019 | Clytia hemisphaerica | exon |
| TCONS_00070195-exon-scaffold_516-1575043694:41371..42019 | TCONS_00070195-exon-scaffold_516-1575043694:41371..42019 | Clytia hemisphaerica | exon |
| TCONS_00070195-exon-scaffold_516-1491911889:42379..42649 | TCONS_00070195-exon-scaffold_516-1491911889:42379..42649 | Clytia hemisphaerica | exon |
| TCONS_00070195-exon-scaffold_516-1510915933:42379..42649 | TCONS_00070195-exon-scaffold_516-1510915933:42379..42649 | Clytia hemisphaerica | exon |
| TCONS_00070195-exon-scaffold_516-1575043694:42379..42649 | TCONS_00070195-exon-scaffold_516-1575043694:42379..42649 | Clytia hemisphaerica | exon |
| TCONS_00070195-exon-scaffold_516-1491911889:42986..43052 | TCONS_00070195-exon-scaffold_516-1491911889:42986..43052 | Clytia hemisphaerica | exon |
| TCONS_00070195-exon-scaffold_516-1510915933:42986..43052 | TCONS_00070195-exon-scaffold_516-1510915933:42986..43052 | Clytia hemisphaerica | exon |
| TCONS_00070195-exon-scaffold_516-1575043694:42986..43052 | TCONS_00070195-exon-scaffold_516-1575043694:42986..43052 | Clytia hemisphaerica | exon |
| TCONS_00070195-exon-scaffold_516-1491911889:43370..43732 | TCONS_00070195-exon-scaffold_516-1491911889:43370..43732 | Clytia hemisphaerica | exon |
| TCONS_00070195-exon-scaffold_516-1510915933:43370..43732 | TCONS_00070195-exon-scaffold_516-1510915933:43370..43732 | Clytia hemisphaerica | exon |
| TCONS_00070195-exon-scaffold_516-1575043694:43370..43732 | TCONS_00070195-exon-scaffold_516-1575043694:43370..43732 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_516 | supercontig | scaffold_516:41371..43732 + |
Blast
BLAST of TCONS_00070195 vs. Swiss-Prot (Human)
Match: ORNT1 (Mitochondrial ornithine transporter 1 OS=Homo sapiens GN=SLC25A15 PE=1 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 5.041e-69 Identity = 115/290 (39.66%), Postives = 173/290 (59.66%), Query Frame = 3
Query: 231 QGVVDFISGSNGGIACVMVGQPLDTVKIKMQTYSSVYKNSFSCFCKVLQSDGARGLYAGSLPAIVSDVFGQAALFLFYGQCQNVVASLANVDNIDNLTIAQRGYAGSLCSFFYGAVFCPPDLVKCRMQIAREIHGSA----NKITMRSTIMDVFRKEGVLGFYQGLSALLLREVPANFFYFAGYEGVKKLLQTPEEQEAGAKTAAWKLIVSGGVGGMTYWTSIYPVDVMKTKLQIWNGEGKKPTLTQMARQTFQQEGIGSFYRGIGPTLLRSFPANAAIFLTYEYTKDFL 1088
Q +D +G+ GG ACV+ GQP DT+K+KMQT+ +Y+ C K G RG Y G+ PA+++++ + LF+ YG CQ VV +A +D L+ Q AGS S F V CP +LVKCR+Q E+ S ++ T+ S I + RK+G LGFY GLS+ LLREVP FF+F GYE + + ++ + L++SGGVGG+ W ++YPVD +K+++Q+ + GK+ + + EGI + Y G+ PT++R+FPAN A+FL YEY++ +
Sbjct: 8 QAAIDLTAGAAGGTACVLTGQPFDTMKVKMQTFPDLYRGLTDCCLKTYSQVGFRGFYKGTSPALIANIAENSVLFMCYGFCQQVVRKVAGLDKQAKLSDLQNAAAGSFASAFAALVLCPTELVKCRLQTMYEMETSGKIAKSQNTVWSVIKSILRKDGPLGFYHGLSSTLLREVPGYFFFFGGYELSRSFFASGRSKD---ELGPVPLMLSGGVGGICLWLAVYPVDCIKSRIQVLSMSGKQAGFIRTFINVVKNEGITALYSGLKPTMIRAFPANGALFLAYEYSRKLM 294
The following BLAST results are available for this feature:
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