|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070194 ID=TCONS_00070194|Name=TCONS_00070194|organism=Clytia hemisphaerica|type=transcript|length=1353bp
TTTAGATTAATAAATCCAACTTTTTCTTAAGTTGGAGATTGCAACATAAA
ACTAATTAATCACTAATTGGATCTCGTTAACTTTTTTTgtcaaacgaaaa
aaaattgaggAAATTGGACCGCGCTGAAAATTGACTGATGTGATGAACTT
TGTACTGTAAGACATTTGGAGTAAATAGTTAACAGTTGTTCGAAGAAACT
TAAAACTTGAAGATAACAATGTCAGCCACAAAGCAAGGAATTATTGACTT
TATATCTGGTTCAAATGGAGGAATAGCATGTGTTATGGTTGGTCAACCTT
TAGATACagttaaaatcaaaatgcaGACTTATTCGTCTGTttataaaaac
agtttttcatgtttttggaatATAATGAAAAGTGAAGGACCACGTGGTTT
ATACGCTGGAACCATGCCAGCCATCGCTTCCAACATTATTGAACATTCTG
CCTTGTTCTTTTTCTATGGACAATGTCAAAATGTTGTTGCTTCTTTGGCG
AAAGTTGATAATATTGACCATTTATCGACTGTACAAAAAGGTTATGCTGG
CTCGCTATGTTCTTTTTTCTTGGGATTTGTTTTATGTCCACCAGAATTGT
TGAAGTGTCGTTTACAAACAGCCAGAGAATTACACGGCTCCACCACAAGT
ATAACGATGCGAAGTACCATCATGGACGTGTTTCGAAAAGAAGGTGTACT
CGGTTTCTATCAAGGTCTATCGGCGCTTTTATTACGAGAAGTTCCTGCTA
ATTTCTTTTACTTTGCTGGATACGAAGGGGTGAAGAAGTTGTTACAAACT
CCTGAAGAACAAGAAGCAGGCGCCAAGACGGCTGCTTGGAAATTGATCGT
TTCAGGAGGTGTCGGTGGTATGACGTATTGGACTTCCATTTATCCAGTGG
ATGTCATGAAAACCAAACTACAGATTTGGAACGGCGAAGGAAAGAAACCG
ACTCTAACTCAAATGGCACGCCAAACGTTTCAACAAGAAGGTATTGGTTC
ATTTTATCGAGGCATTGGGCCAACACTTCTTCGATCTTTCCCTGCAAACG
CCGCCATCTTCTTAACTTACGAGTATACTAAAGACTTCTTATGGAAAGTG
ACTTAACATTCGCCGGCGTGTGCTGTGATCTTTTtgtttaaattctaaaa
taaatatttatcaggaaatattccaatttttaattaccttatcggccaaa
acttagtcggcccttagtgactaaattttgacgaggtgactaaaattagg
gccgactaatcgactaagttttggctgaTAAGGTAGCAAACGAATATGAT
ATTttattaaaacaattttgtacAGAATTTTAGTAATATTACGCAgatca
aaa Run BLAST on NCBI protein sequence of TCONS_00070194-protein >TCONS_00070194-protein ID=TCONS_00070194-protein|Name=TCONS_00070194-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MSATKQGIIDFISGSNGGIACVMVGQPLDTVKIKMQTYSSVYKNSFSCFW
NIMKSEGPRGLYAGTMPAIASNIIEHSALFFFYGQCQNVVASLAKVDNID
HLSTVQKGYAGSLCSFFLGFVLCPPELLKCRLQTARELHGSTTSITMRST
IMDVFRKEGVLGFYQGLSALLLREVPANFFYFAGYEGVKKLLQTPEEQEA
GAKTAAWKLIVSGGVGGMTYWTSIYPVDVMKTKLQIWNGEGKKPTLTQMA
RQTFQQEGIGSFYRGIGPTLLRSFPANAAIFLTYEYTKDFLWKVT Run BLAST on NCBI transcript from alignment at scaffold_516:30666..43732+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070194 ID=TCONS_00070194|Name=TCONS_00070194|organism=Clytia hemisphaerica|type=transcript|length=13067bp|location=Sequence derived from alignment at scaffold_516:30666..43732+ (Clytia hemisphaerica)
TTTAGATTAATAAATCCAACTTTTTCTTAAGTTGGAGATTGCAACATAAA
ACTAATTAATCACTAATTGGATCTCGTTAACTTTTTTTgtcaaacgaaaa
aaaattgaggAAATTGGACCGCGCTGAAAATTGACTGATGTGATGAACTT
TGTACTGTAAGACATTTGGAGTAAATAGTTAACAGTTGTTCGAAGAAACT
TAAAACTTGAAGATAACAATGTCAGCCACAAAGCAAGGAATTATTGACTT
TATATCTGGTTCAAATGGAGGAATAGCATGTGTTATGGTTGGTCAACCTT
TAGATACagttaaaatcaaaatgcaGACTTATTCGTCTGTttataaaaac
agtttttcatgtttttggaatATAATGAAAAGTGAAGGACCACGTGGTTT
ATACGCTGGAACCATGCCAGCCATCGCTTCCAACATTATTGAACATTCTG
CCTTGTTCTTTTTCTATGGACAATGTCAAAATGTTGTTGCTTCTTTGGCG
AAAGTTGATAATATTGACCATTTATCGACTGTACAAAAAGGTTATGCTGG
CTCGCTATGTTCTTTTTTCTTGGGATTTGTTTTATGTCCACCAGAATTGT
TGAAGTGTCGTTTACAAACAGCCAGAGAATTACACGGCTCCACCACAAGT
ATGTAAGTAGAAGGTATATGGTTTTTTGTAGTTCTCGGCAGTGCACGAGG
TTCCTTAGCGGCCACCCCCTGGGAGTCATATTgtccgacccacggcatgt
gtTTTTCGAGACCTTCTAAATGCaatgtaagggtgtacttttgaaagaat
gcacagcaagggtcttcttttagctgtataactgtaagggtgtgtttggg
gaATGCTGAATTGAATCTGATGTATCTTTAGTAGTAGTGTTGACCAGCGC
CCatattgatttgttttgcacattgtgtcgacatctcaggctcattttca
ggtggTTTCAGCAAAacaagatatgaaatcaaactacactgcaagggtca
gaaacgttcgATAAAATACACCGAttttgaaaacctttttttggtGGCAC
ATGTCTTTTAGAAATCGATTGCCCCTCCCCCCTGGGCCCCCCTCATCATG
CCATAATGCCAATATTTTGCTCTCTTTCATCACGAAAtcacgaaaaaata
ataaaaaatagcCCAATGCACCAAGTTTTAAACCGCTTCAGGGCTTGAAA
ATGTTCGtttgtttgtttgatttttcaaactataTGCAGCtatatgagct
cttttgttgttttagacattccgtttttagtaataagttggagatttgat
atttcacaaaaaagtgctaccaaggggtatttcgggtcccatatcttccg
aaggacttttctgtttgccttgaaaNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaatga
aagttatagcataagtagaaaaaaagttcaatttttacaatcgcaaattt
aaccgataaaaatcgcgaatttttcaaccaaaaatatattcaaatatagc
gcttttgattctctgaaacaagcaaaaaaaaatttccataattatatttg
attaTCAAAAGTTAGCATTCTTGTTGACTTTAGAATGTTCAGATCAAACT
TGAGTTTTACTAAAGAGTCTTATTTCagcgggcgagcttagaatttattt
tgatatatttcataaaataaatcaaaagactttaacgaccaattaagGAC
AGATTAAACTCCTGTATTTCTTTGTACCTCCATGGTTACATAAAACTACA
TGATATGTTATATCGCAATCAAGATAGTATtcactagacggttcccgtcg
tcgcaaacgccgatTTAGCTTGCGCATCAGAAGCCCGTaggatgataaag
atggtattgttgatgctctctaaggggaatttaaattagttttcGGAGTA
CATCAATTAGTTGGGAGATTTCTCGTAAatacctttttggacctaccttg
gaggtcctataaattaacccatgctcgtccgtccgtccgtccgtccgtcc
gtctgttaccagcttttctcaggattggctcattagttttttctgatttt
tggcacaatgatgcaaaatggcaatgcccaaaatgtgacggagcccgatt
ttcgaaagaaaattttttccggccgaaaatgccggataTATATATagcac
tttctcgagattttatcattagttttttctgattttttctcaaagatgca
tattaataatgctcaaaacatggtcgagtccgatttttgagaaaaaattt
tttccggccgaagaTGCCGAAAATATgccagaaatcgccgtttttctgga
ttttcattggactttttccttataattggttgttttttcatgtaaaaaca
ttattattagcaatgctcaccatcaagcatgtttcaattttcaataaaat
tgatttttgaagccagaactattcaaaaatcgccggaacaacctattttc
gccggaaagaccgtatttcttgaatttctcgagctgtaatttatattttt
ttatgaaattttgcacactgacgcaAAATGACCATACCTAAAATGtcacg
gagcccgattttcgaaaaacatttttttccggccgaaaatgccggaaata
tgccggaaaaaccggtttttgccattttctcgaatttcCATCCTCATTtg
tctctgattttttgcagaatgacgcgtattcgcaatgctcaaaaaatgac
cgagccggaaatttccgtttttgcagattttcgttggattttttcgtttt
atgtctttgtttttttttcaaacaaaaatattatttgtaagaatgtccat
gattaagcatggttcaattttcaattaaactgattttggtacaggaactt
actaaaaatcgccagaacagccgagaatcgccggatttcattaatttctc
gagttgttcttgttcttttttttctttttttttttttgaccagttatgtc
ctATGTGTTTcaatgtttcaatgttcattgattagtttgataaccaggta
ggtccataaaagtatcacttgttatacTTCAAATTGAATGTGAGAAAATG
ACTTTAAATCTTCACAATAAAATTAGCTCAGTAAACAATAAACTGGCAAT
TATTAGAGTTTCTTCAGGAAGTTTGAAGGCGATTTCAATTTAATCGAAAA
CAGGAACTACTTGAAGCTTATTGAGTAGTAAAACGCCAAATTGAGAGTGT
CAAATGTATCATCAGTGTAGTTTTGGCGAATAAAAGAGCTAAACGATACA
CCATCGGTATTGAGCGAGCACTCTCGGCTGATAGAAGAAAATGGAGTTGT
ATCATCAGTGTATAAGAAtggaaaagatttaaaaaatgttgctgtattta
cgaatttgaggtcgaaatgacgcgccttaaaagACCATATAATAAATACT
TTGATCCTCCTGGGGCCgccaaaaaaatggctttcaaaatcggaccctta
cagtgcagcctTTGAGCAGTGAAAGATACCCCTACAGTGCATTATAGCTA
TTATACCGAAATTTGtttacccttacagtgtaggTTTGATTGCATATCTa
attttgctgaagccacctgaaaatgagcctgagatgtcaACACAATGTGA
GTCAAGactataaagatacatcagatttttactgtcagtcttgcaattca
gcagtccccaaacacacccttacagtgtatccagctaaaaaAAGACCCTT
gtactctatcaaaagtacacccttacagtgtatccagcaaaaagaagacc
cttgtactctatcaaaagtacacccttacagtgtatccagcaaaaagaag
acccttgtactctatcaaaagtacacccttacagtgtatccagcaaaaag
aagacccttgtactctatcaaaagtacaacCTTGCAGTGCATTTCAAGgg
cctttttttttttttatctatagtatatgtaacacgaacaaatagtacaa
aactaagggttcctaacctcccgcaaaaggaccaccagatcataccgtCA
GGAGGAAGGTACccaaactaagctaacaataaattaataaatcaattgat
aaatgcatgggaaaaaaaacttactacagaggataaatactaacaaaaaa
taaaaaacaaaaacaaaaagagcttggagagcagttagagtaaaagacta
aaataacggtcccccaaaacggcttttatcggcgatccaaaaaatatctg
caatctgattggttaaaacgagtacaatatatcttgtattttacatgtaa
aaatataaattgacgaaaagatgttgttgcatcgtagcggtagaagcaat
ctaacgtcactttgctacaaaagtgtcctccaacacaaaatgcattgttt
gggtcaccgataaaccagttatcagacatttgctcgtacaatatggaaat
atttcactcgttccggattttccgtatattttcctcgcctaaaggctcgg
aaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNggtagtatatggtaatatgcttttgccta
ggcggactgtaaaacagtccgccagattttagttgtttttggaaggtaaa
aacagtatgaagcaatattttcatttgagaataagggattgcaaatctgt
taatcgtgattgtttctcatttttgattatatcattcaactccaagtagt
tttattgttattttgatttttaattttttttttcaaaatggcgacctcgc
caaatgctcctagtctacttcactggactcagcgtcataaaaaattatca
aaaagcaaagttcagccagaagtagactctagtctaatattgtactcgca
actgtccgataactattacgtatcacagataaattttattgttatacTTA
ATATATCGTGATTTTGGACAATGCTAAAATCGGGgtcgccataaagaagt
attctacacaatgttttgggattNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTTatgcaaaaaggaaagaaagaggcaCGATAACG
CTCGGTTCTACAGAAAGGTGCCTCGAGTGGTGGTTTTATCCTTCGCCCTG
CATTGCGTTCTTCCTCTCCTCTGGGGAGGAAGAATATTCGTAAGATAAGC
AGGAGCAAAGCcattgattattttataaaaaaatacgagGGTCTCGaaaa
ccctacccttaagggtggcCGTGGGTCGGAGCATATGAATCCCCCCTCGG
GTTGATCCTTCACAACAATCATGGGCATATCCGAACTTACGAGCCAACAA
CTTATATCCACTtctagtctgattcgcagacctatacttcctataggtct
gcttaatagtGTATGGATTGGTTTCCCGCTACGGTGGCTCTTATGGTGGC
CGACTCGTGCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACgccttttcgaa
tgtttcttttattttcgaatgatttttttctattttcgaatgttttttta
ttttcgaatgttttgatattagaGCTTTGAGTcaacaaatttgaatttct
caaaaactttgaaagaaaatttcactATAACTATTTGTTTATAAAGAACC
TCTTCAGGTTAGTTAAATGAGACGTATTGGGTTtcatcaataaaactgat
tccaACATTCTTCCCGTCCCTGTCAAAGTTtaacaaaacaaagaataaCA
GAATCTGCTGctgcactttttcaaacaacTTTAAGTAGACACAAAGTAAA
AGGGAAGAAGGCTCTCTGGAAAGAGATTAAGCCACAAAATGATATTACTA
TTGGATACTTACAACAACAAATCTTTCCCTAACATAAGCTTCTAAAATAA
CCACATACCTGTCAAGACCTGTTACTGTATCTTTTCTACATTcgttcaaa
acaaacaaaatgtccaccaaaacaaatcaaaattccaCATTATAAGCTTG
ATAACAAATGTTCTAGacggtaatttttttcttggtaCACATATTATATA
CTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCGAcggccatcttgaatttgaacAGCGAAAGCTAT
GCTACTTCGTAACAGGTAGAGTACCTTTGCAAATTAATCATCATAAGCAC
TCGCCAGCAAAAATAGCCTTCTCGCCGAATTTCGGCGAGAAGCGGCATTT
CGTGGGAAAGAAGATTTACCGAGTATTAAgcagcctctataagaaacttt
tttcgctagaggatgagcagaagcctaatcCACTTCTCGCGCGGAAAACC
TCCGTTTTTTACCTATACGCATTGACTatttaaaaactcaatttttacTA
ACTTTTTTGTAGAAAGTGTCAcgccttctaaaattcgaaaatttacgTCA
CatgatgtttagaataactgaCGTCAGTTTTGATTTCGTTAAAAAGTCAC
TGTAGGGGCTTCTTCGATTGGAACGCCAAATCTTTTTTTGGAGGAGGGTT
TTATCTGAACTccgaaaaataattcaaattccccttaaaaataaagttag
aAAGCTACATATGTACCCTTACAATATTGGTACCGGATTTAtcattttat
tgaatttgtCTTTTAATGTGTATGTCGGATGGAAATGGTTATCTAGGTCG
ATGGATGTATACTAAGTGGCAGTTTTTACACTAGGCTTGGATAGTGGtag
ttttcgaatgtttgttttgaactattttTATCAATGATCTTTATTATTGA
TTTTGTNNNNNNNNNNNNNACTAaaaatcttgatgttcttataaatctcg
gagacagagatagaacagcaattaactgaaaagacaatgcagtacatatt
ccagccgcggctttcttaagctaaggctacactgtTGAGTTTTTTCGCGC
GGCTGCAATGCAATTTTAAAATTGCAGTAGCCTGAAAGTCTTTGTAGTGT
AGCCACAAAAACCTGCGCAATTCTTTATTTtggaaacaaaacattcgaat
gttttaaaacgttcgaaaattcgaacacaaaaacattcgaaaatatcgTT
GTgacgtttcgaacgttttcttgCAGAGTTCTTGCAACAAAATTAGTTCA
AACTGATTTTGTTGCAGGCATTTGCAATCTCTTCTGCAATTTTTTGGGGC
TTCCTTTGAGGACTTTGGgatttcctttttaaaaattgcattgcAAGCGC
ATGAAAATATTGCAgagtgtagccttagctttaTACTATGGTCACatgat
gtttagaataactgaCGTCAGTTTTAATTTCGTTTAAAAGTCACTGTAGG
GGCTTCTTCGATTGGAACGCCAAATCTTTTTTTGGAGGAGGGTTTTACTc
cgaaaaataattcaaattccccttaaaaataaatagaaagctACTTATGT
ACCCTTACAATATTGGTACCGGATTTATCATTTTATTGAATAATTTGTCT
TTTAATGTGTATGTCGGATGGAAATGGTTATTTAGGTGTGTGGCATTGGG
TCGATGATGTATACTAAGTGGCAGTTTTTACACTAGGCTTGGATAGTGGT
AGTTTTCGaatatttgttttgaactattttTATCAATGATCTTTATTATT
GATTttgttgtatatattttttctttggattaattagaaattaaaattag
aaatatctcagttttttcctagaaataagaacaggctaagaacaatttta
ggctcaaagtgccaaaaaatatgGGCAGCTGATCTTCATAAAAAATTTCT
AGCTCTTATAAAAAGAGAGTAAGCTGGTCAAAAGCATTTTTCGTTCAcaa
gttttcgagttagctaacttgGATTTTTTTGTATGGTAGTAGAAAAATCC
aaagaaaatcgaaaaagaagtaggcggaaggaagtttgcttgtttttctt
cctcctttcttccTGTTTAATGTGGTGGAGTGGAGATTTTATGAAAGATG
ACAAATAAGATTTAtcgaatttaagtgccctgatgggGCCCTGATGTATC
Atatgtgtgcaccaacaaaattttgcatcgtaaaacgatattttgatgct
tgaatttcGACTTGCATGAGTGAATAATTTTTTACCGCACGTTCTTTgct
cactttggctccagataattgctttgtcagttctacagatatgttgtaga
ttatttcaaggtatgttagttatgtatatacaatACATGAGAGTtgtatt
gaatatttctaacaATAATAATATTTCTACTtatttatgattctacaaat
tcaaaatggagTGCTAGTTGTTCCTTTGTATAAGATGTTAAAACTAACCA
ATaatttttcttcagctttggcatttcacttttcgaTACTACATAGGACC
TTTGCGTTTATCTTTTTCAGGTACTGTGAgctcaaattcttttgaagaga
ttggagattttgttttctttccttttgttCATCTTTTGCCAGAAGAATTC
GAATTTCCAAACACTCGAAttatgaataaaaacattcgaattatgaataa
aaacattcgaattgcgaataaaaatattcgaataatgaataatttgcact
tttatgacgtcataatttagctaactcgaaaactcctaactcgaagtttt
ctaactcgaagattccgggcctcaaaaaacattcgaattacaaaacattc
gaactacaaaacattcgaattacaaaacattcgattttatcaaaaacatt
cgattttcgaaGGTCCGACGTTCAAATGACGTAATAAGATTGGAATGTCA
GATACATCGTCAAAAAATTGCAGATTCTTCCGCGACAAAATCAGTTCAAA
CTGATTTTGTTTCAGACACTTGCAATTTGttctgcaatatttttattgcg
tTGCAGAGCAATTGCAGAAAACATTGACGTGctacattttgcaatttctc
gCGCGCTTGCAACGCAACGCtaattgcattgcagccgcctgaaaaaaCTA
TCAGTGTAGCCTTTAGTCTGAATGgaagacctctacaaaaccccaggtag
tataagaagcacgaatccgttagtggatgccagcatcCTATGTAGCCTTA
taagactagcaagcgtctgtctttcttTGGACACAagaacgcgggaatag
tgcttataataaagagttcttataaaaatagaaattgccgcaggagagtg
gattggaaagacattcagtgaacatataaaaaatagatcccattgaaagt
atattctgcagcgaaatacaacgacgtggtttactagtctagtgtagcct
tagcttaaGACTGAGTTACATAAAATTACATGATATGTTATATCGCAATC
GATACTATTCATTAGAACATTTCTTATCGTCACGTTTTGTCAGTGTAACA
AGACAATTTAATTCGGCTGTCTAACGCgaaattgtccaaaaaaggTTTTA
GCTGAATGAACCAAGGTATTCATTAAAAAATCGAcgtcaaattttatttc
ttatAGAAAGTAAATGAGTTTTTCATCTCTATTGAGTTtttttgtattct
tataaaaaagaaaacaattcatAACACAGTCTGTTTTATATTGCATAACA
TAACATATTACATAACATATTAAATgttatgtttttgaatgaagttATGT
TATGTGAGTTTATAAATGAACACGAGAGTTGGTAGAGGGTAGATGTTTTC
TGAATCTGTAAATTATTGGAAGTTATTTGATACTATAATTCTGGTGATTC
TATCGCTCGAAACGTTGTATTAGTTTTCAACCTCTTTGTAATACAATACC
TTTTGGTGGAACCGAAATTCTGAATTAAAGCTTGACTGATCATTGTATGA
TTACTGATATTTGGCTTGGAAGGTTTTTATCCTCTCTTCATAGAGTGCtc
gataattattttcataACCAAAGATGGCATCGAAACAAGGGGTTGTAGAC
TTTATATCTGGTTCAAATGGAGGAATCGCATGTGTTATGGTTGGTCAACC
TTTAGATACagttaaaatcaaaatgcaGACTTATTCGTCtgtttataaga
acagtttttcatgtttttgcaAAGTTTTACAAAGCGATGGAGCTCGTGGT
TTATATGCTGGCTCCTTGCCAGCTATTGTGTCAGATGTTTTCGGACAAGC
TGCGTTATTTTTATTCTATGGACAATGTCAAAATGTTGTTGCTTCTTTGG
CGAACGTTGATAATATAGACAATTTAACGATAGCACAACGAGGTTATGCT
GGCTCTCTATGTTCTTTCTTTTATGGTGCGGTTTTTTGTCCGCCAGATTT
AGTGAAATGTCGTATGCAAATTGCAAGAGAAATACATGGCTCTGCTAATA
AAATGTAAGTGACGAATGAAGACTGCTAGAAAGTCTAACTGACCCAGTTA
TCTATTTTTCTTCTGATGTCATGTCATGGTAAAGAAATGAAATAGAAAAT
GGAGAATATTTCGCAATCTGATTAAAAATATTGATAGTCATGGGTTAAAA
TATGTCCAAGATGGAATAAAAAAACAAGGCTGTGCTCATTACATATTGAG
ATTATTATAGAAGTGAATAAAAAAAGCAGTTTCATACCCTGattaaattt
ttgataaaatatccCACTATCCAGTACCGAATCGGGGAAATCGAGAAAAC
TTCAAATGAACCTTAAGTTGAAGGGACAATCAATAATGAAacttatcttt
atttttctctcAGAACGATGCGAAGTACCATCATGGACGTGTTTCGAAAA
GAAGGTGTACTCGGTTTCTATCAAGGTCTATCGGCGCTTTTATTACGAGA
AGTTCCTGCTAATTTCTTTTACTTTGCTGGATACGAAGGGGTGAAGAAGT
TGTTACAAACTCCTGAAGAACAAGAAGCAGGCGCCAAGACGGCTGCTTGG
AAATTGATCGTTTCAGGAGGTGTCGGTGGTATGACGTATTGGACTTCCAT
TTATCCAGTGGATGTCATGAAAACCAAACTACAGGTAAATAAACTATTTT
AGGAAGGGGTcttataaacccttgaatgctatgagcttttctcgggatta
gctcatttgattttttgcaaCGACAATTATGCAACTTAGTAACTCTCAAA
ATATAAACAgaggccaatttttgaaaataaactttttgtgCGGTTTCCAG
ATCCGGTTATGTCCCAGAAGAATCATTTGTTTTtcctgatttcttttttt
tcgagtTAAATATTTTCTGCCGCTCTAGAGTAATGAGAATCTTAGAGTGA
TACTTGCTCGGTTTTTTATGTATGCCAGAATTCTCATTatgtaatctttt
cttttttgcaaaTCTTACAGATTTGGAACGGCGAAGGAAAGAAACCGACT
CTAACTCAAATGGCACGCCAAACGTTTCAACAAGAAGGTATTTAtctcgt
tttttgtttttcacgaCGAAtgtaaaagaattttaaaatcagcATTTCAA
GCAAAATAGGCGTACAGTAAAACCCTTAACGTTAAAACCTGTTAAAACCT
AAAAAAGAGATCGTCTAGTGTAATTTAAAATTCCAGTTCTCTCTAAATAC
GAAAGACTAAGACCTACAgtaaactctcgcttattcaaatctctctgtaa
ttcaagTAAATAATATTGTCGCTATGATTGACGAGATTCAACTATAGTCA
AAGACCGCCTTTGAATTACACATTTACTTGGATAACATTTTCATCACTTT
TCAGGTATTGGTTCATTTTATCGAGGCATTGGGCCAACACTTCTTCGATC
TTTCCCTGCAAACGCCGCCATCTTCTTAACTTACGAGTATACTAAAGACT
TCTTATGGAAAGTGACTTAACATTCGCCGGCGTGTGCTGTGATCTTTTtg
tttaaattctaaaataaatatttatcaggaaatattccaatttttaatta
ccttatcggccaaaacttagtcggcccttagtgactaaattttgacgagg
tgactaaaattagggccgactaatcgactaagttttggctgaTAAGGTAG
CAAACGAATATGATATTttattaaaacaattttgtacAGAATTTTAGTAA
TATTACGCAgatcaaaa Coding sequence (CDS) from alignment at scaffold_516:30666..43732+ >TCONS_00070194 ID=TCONS_00070194|Name=TCONS_00070194|organism=Clytia hemisphaerica|type=CDS|length=3552bp|location=Sequence derived from alignment at scaffold_516:30666..43732+ (Clytia hemisphaerica)
ATGTCAGCCACAAAGCAAGGAATTATTGACTTTATATCTGGTTCAAATGG
AGGAATAGCATGTGTTATGGTTGGTCAACCTTTAGATACagttaaaatca
aaatgcaGACTTATTCGTCTGTttataaaaacagtttttcatgtttttgg
aatATAATGAAAAGTGAAGGACCACGTGGTTTATACGCTGGAACCATGCC
AGCCATCGCTTCCAACATTATTGAACATTCTGCCTTGTTCTTTTTCTATG
GACAATGTCAAAATGTTGTTGCTTCTTTGGCGAAAGTTGATAATATTGAC
CATTTATCGACTGTACAAAAAGGTTATGCTGGCTCGCTATGTTCTTTTTT
CTTGGGATTTGTTTTATGTCCACCAGAATTGTTGAAGTGTCGTTTACAAA
CAGCCAGAGAATTACACGGCTCCACCACAAGTATAACGATGCGAAGTACC
ATCATGGACGTGTTTCGAAAAGAAGGTGTACTCGGTTTCTATCAAGGTCT
ATCGGCGCTTTTATTACGAGAAGTTCCTGCTAATTTCTTTTACTTTGCTG
GATACGAAGGGGTGAAGAAGTTGTTACAAACTCCTGAAGAACAAGAAGCA
GGCGCCAAGACGGCTGCTTGGAAATTGATCGTTTCAGGAGGTGTCGGTGG
TATGACGTATTGGACTTCCATTTATCCAGTGGATGTCATGAAAACCAAAC
TACAGATTTGGAACGGCGAAGGAAAGAAACCGACTCTAACTCAAATGGCA
CGCCAAACGTTTCAACAAGAAGGTATTGGTTCATTTTATCGAGGCATTGG
GCCAACACTTCTTCGATCTTTCCCTGCAAACGCCGCCATCTTCTTAACTT
ACGAGTATACTAAAGACTTCTTATGGAAAGTGACTTAAATGTCAGCCACA
AAGCAAGGAATTATTGACTTTATATCTGGTTCAAATGGAGGAATAGCATG
TGTTATGGTTGGTCAACCTTTAGATACagttaaaatcaaaatgcaGACTT
ATTCGTCTGTttataaaaacagtttttcatgtttttggaatATAATGAAA
AGTGAAGGACCACGTGGTTTATACGCTGGAACCATGCCAGCCATCGCTTC
CAACATTATTGAACATTCTGCCTTGTTCTTTTTCTATGGACAATGTCAAA
ATGTTGTTGCTTCTTTGGCGAAAGTTGATAATATTGACCATTTATCGACT
GTACAAAAAGGTTATGCTGGCTCGCTATGTTCTTTTTTCTTGGGATTTGT
TTTATGTCCACCAGAATTGTTGAAGTGTCGTTTACAAACAGCCAGAGAAT
TACACGGCTCCACCACAAGTATAACGATGCGAAGTACCATCATGGACGTG
TTTCGAAAAGAAGGTGTACTCGGTTTCTATCAAGGTCTATCGGCGCTTTT
ATTACGAGAAGTTCCTGCTAATTTCTTTTACTTTGCTGGATACGAAGGGG
TGAAGAAGTTGTTACAAACTCCTGAAGAACAAGAAGCAGGCGCCAAGACG
GCTGCTTGGAAATTGATCGTTTCAGGAGGTGTCGGTGGTATGACGTATTG
GACTTCCATTTATCCAGTGGATGTCATGAAAACCAAACTACAGATTTGGA
ACGGCGAAGGAAAGAAACCGACTCTAACTCAAATGGCACGCCAAACGTTT
CAACAAGAAGGTATTGGTTCATTTTATCGAGGCATTGGGCCAACACTTCT
TCGATCTTTCCCTGCAAACGCCGCCATCTTCTTAACTTACGAGTATACTA
AAGACTTCTTATGGAAAGTGACTTAAATGTCAGCCACAAAGCAAGGAATT
ATTGACTTTATATCTGGTTCAAATGGAGGAATAGCATGTGTTATGGTTGG
TCAACCTTTAGATACagttaaaatcaaaatgcaGACTTATTCGTCTGTtt
ataaaaacagtttttcatgtttttggaatATAATGAAAAGTGAAGGACCA
CGTGGTTTATACGCTGGAACCATGCCAGCCATCGCTTCCAACATTATTGA
ACATTCTGCCTTGTTCTTTTTCTATGGACAATGTCAAAATGTTGTTGCTT
CTTTGGCGAAAGTTGATAATATTGACCATTTATCGACTGTACAAAAAGGT
TATGCTGGCTCGCTATGTTCTTTTTTCTTGGGATTTGTTTTATGTCCACC
AGAATTGTTGAAGTGTCGTTTACAAACAGCCAGAGAATTACACGGCTCCA
CCACAAGTATAACGATGCGAAGTACCATCATGGACGTGTTTCGAAAAGAA
GGTGTACTCGGTTTCTATCAAGGTCTATCGGCGCTTTTATTACGAGAAGT
TCCTGCTAATTTCTTTTACTTTGCTGGATACGAAGGGGTGAAGAAGTTGT
TACAAACTCCTGAAGAACAAGAAGCAGGCGCCAAGACGGCTGCTTGGAAA
TTGATCGTTTCAGGAGGTGTCGGTGGTATGACGTATTGGACTTCCATTTA
TCCAGTGGATGTCATGAAAACCAAACTACAGATTTGGAACGGCGAAGGAA
AGAAACCGACTCTAACTCAAATGGCACGCCAAACGTTTCAACAAGAAGGT
ATTGGTTCATTTTATCGAGGCATTGGGCCAACACTTCTTCGATCTTTCCC
TGCAAACGCCGCCATCTTCTTAACTTACGAGTATACTAAAGACTTCTTAT
GGAAAGTGACTTAAATGTCAGCCACAAAGCAAGGAATTATTGACTTTATA
TCTGGTTCAAATGGAGGAATAGCATGTGTTATGGTTGGTCAACCTTTAGA
TACagttaaaatcaaaatgcaGACTTATTCGTCTGTttataaaaacagtt
tttcatgtttttggaatATAATGAAAAGTGAAGGACCACGTGGTTTATAC
GCTGGAACCATGCCAGCCATCGCTTCCAACATTATTGAACATTCTGCCTT
GTTCTTTTTCTATGGACAATGTCAAAATGTTGTTGCTTCTTTGGCGAAAG
TTGATAATATTGACCATTTATCGACTGTACAAAAAGGTTATGCTGGCTCG
CTATGTTCTTTTTTCTTGGGATTTGTTTTATGTCCACCAGAATTGTTGAA
GTGTCGTTTACAAACAGCCAGAGAATTACACGGCTCCACCACAAGTATAA
CGATGCGAAGTACCATCATGGACGTGTTTCGAAAAGAAGGTGTACTCGGT
TTCTATCAAGGTCTATCGGCGCTTTTATTACGAGAAGTTCCTGCTAATTT
CTTTTACTTTGCTGGATACGAAGGGGTGAAGAAGTTGTTACAAACTCCTG
AAGAACAAGAAGCAGGCGCCAAGACGGCTGCTTGGAAATTGATCGTTTCA
GGAGGTGTCGGTGGTATGACGTATTGGACTTCCATTTATCCAGTGGATGT
CATGAAAACCAAACTACAGATTTGGAACGGCGAAGGAAAGAAACCGACTC
TAACTCAAATGGCACGCCAAACGTTTCAACAAGAAGGTATTGGTTCATTT
TATCGAGGCATTGGGCCAACACTTCTTCGATCTTTCCCTGCAAACGCCGC
CATCTTCTTAACTTACGAGTATACTAAAGACTTCTTATGGAAAGTGACTT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070194-exon-scaffold_516-1491911889:30666..31317 | TCONS_00070194-exon-scaffold_516-1491911889:30666..31317 | Clytia hemisphaerica | exon |
| TCONS_00070194-exon-scaffold_516-1510915933:30666..31317 | TCONS_00070194-exon-scaffold_516-1510915933:30666..31317 | Clytia hemisphaerica | exon |
| TCONS_00070194-exon-scaffold_516-1575043694:30666..31317 | TCONS_00070194-exon-scaffold_516-1575043694:30666..31317 | Clytia hemisphaerica | exon |
| TCONS_00070194-exon-scaffold_516-1491911889:42379..42649 | TCONS_00070194-exon-scaffold_516-1491911889:42379..42649 | Clytia hemisphaerica | exon |
| TCONS_00070194-exon-scaffold_516-1510915933:42379..42649 | TCONS_00070194-exon-scaffold_516-1510915933:42379..42649 | Clytia hemisphaerica | exon |
| TCONS_00070194-exon-scaffold_516-1575043694:42379..42649 | TCONS_00070194-exon-scaffold_516-1575043694:42379..42649 | Clytia hemisphaerica | exon |
| TCONS_00070194-exon-scaffold_516-1491911889:42986..43052 | TCONS_00070194-exon-scaffold_516-1491911889:42986..43052 | Clytia hemisphaerica | exon |
| TCONS_00070194-exon-scaffold_516-1510915933:42986..43052 | TCONS_00070194-exon-scaffold_516-1510915933:42986..43052 | Clytia hemisphaerica | exon |
| TCONS_00070194-exon-scaffold_516-1575043694:42986..43052 | TCONS_00070194-exon-scaffold_516-1575043694:42986..43052 | Clytia hemisphaerica | exon |
| TCONS_00070194-exon-scaffold_516-1491911889:43370..43732 | TCONS_00070194-exon-scaffold_516-1491911889:43370..43732 | Clytia hemisphaerica | exon |
| TCONS_00070194-exon-scaffold_516-1510915933:43370..43732 | TCONS_00070194-exon-scaffold_516-1510915933:43370..43732 | Clytia hemisphaerica | exon |
| TCONS_00070194-exon-scaffold_516-1575043694:43370..43732 | TCONS_00070194-exon-scaffold_516-1575043694:43370..43732 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_516 | supercontig | scaffold_516:30666..43732 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023395 | Mt_carrier_dom |
| IPR018108 | Mitochondrial_sb/sol_carrier |
Blast
BLAST of TCONS_00070194 vs. Swiss-Prot (Human)
Match: ORNT1 (Mitochondrial ornithine transporter 1 OS=Homo sapiens GN=SLC25A15 PE=1 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 2.012e-70 Identity = 122/290 (42.07%), Postives = 173/290 (59.66%), Query Frame = 3
Query: 234 QGIIDFISGSNGGIACVMVGQPLDTVKIKMQTYSSVYKNSFSCFWNIMKSEGPRGLYAGTMPAIASNIIEHSALFFFYGQCQNVVASLAKVDNIDHLSTVQKGYAGSLCSFFLGFVLCPPELLKCRLQTARELHGXXXXXXXXXXX----XDVFRKEGVLGFYQGLSALLLREVPANFFYFAGYEGVKKLLQTPEEQEAGAKTAAWKLIVSGGVGGMTYWTSIYPVDVMKTKLQIWNGEGKKPTLTQMARQTFQQEGIGSFYRGIGPTLLRSFPANAAIFLTYEYTKDFL 1091
Q ID +G+ GG ACV+ GQP DT+K+KMQT+ +Y+ C G RG Y GT PA+ +NI E+S LF YG CQ VV +A +D LS +Q AGS S F VLCP EL+KCRLQT E+ S ++T+ + RK+G LGFY GLS+ LLREVP FF+F GYE + + ++ + L++SGGVGG+ W ++YPVD +K+++Q+ + GK+ + + EGI + Y G+ PT++R+FPAN A+FL YEY++ +
Sbjct: 8 QAAIDLTAGAAGGTACVLTGQPFDTMKVKMQTFPDLYRGLTDCCLKTYSQVGFRGFYKGTSPALIANIAENSVLFMCYGFCQQVVRKVAGLDKQAKLSDLQNAAAGSFASAFAALVLCPTELVKCRLQTMYEMETSGKIAKSQNTVWSVIKSILRKDGPLGFYHGLSSTLLREVPGYFFFFGGYELSRSFFASGRSKD---ELGPVPLMLSGGVGGICLWLAVYPVDCIKSRIQVLSMSGKQAGFIRTFINVVKNEGITALYSGLKPTMIRAFPANGALFLAYEYSRKLM 294
The following BLAST results are available for this feature:
|
