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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070193 ID=TCONS_00070193|Name=TCONS_00070193|organism=Clytia hemisphaerica|type=transcript|length=1539bp
CTAATCTTTATCTAAAAGTGTATACAAAGCTATTGTttaaccctagcaaa
gccttttATAAGCAGGGGAATTTGAATAAGAATCTCCTAGGAAGAAAGTT
ATAAAATACCAATCAGCAGGGACGCTTATTAAGTGATGAAAGTTCTCACT
CAAGTTCATCTTGTTATCAAAGGAAGAAGTACTTCcgttttttcttctat
ttttttagGCAAGAAATACAAACATAACCAAACAACCCATCTAGAAACTA
CTGCAAATGGTTTAATAGCTTGATAATCCTTTAAAATCACATCTGGTATA
TATTGAATCTAATAAGAAACATGGCTTCTGAAATTCAATCAATCAGAAAA
GAAGCTATCATTGACTTTACAGCTGGTGCCATTGGTGGCACTTGTTGTGC
ANTCAATCAATCAGAAAAGAAGCTATCATTGACTTTACAGCTGGTGCCAT
TGGTGGTACTTGCTGTGCATATGTCGGTCAACCTTTAGATACAATCAAGG
TCAAAATGCAAACTTACCCAGATTTATATAGAAGTTCATGGAGATGTGCT
GCTGATATTGTTAAAAAACAAGGATTCATGAGATTTTATGCTGGCGCTGT
ACCGGCAGCTGCCGCAAACATAGCCGAAACATCGGTGCTGTTCTTGTGTT
ACGGGCAATGTCGGAAAGTTGTTGCATGGTGTTCAGGGACACCACTGGAA
AATATGGGAACAGTTCATAATGCGCTCTCTGGTTCTTTTGCTGCTTTCTT
TGCCGCTTTTTCGCTCTGTCCACTAGAACTGATCAAATGTCGAATGCAAA
CATTAATGGAGAACCAAGGGACTTTCAAAAACATcacGCCGTTCACTATC
ATCAAGGACGTATTACGTACTGACGGTTTCTTTGGTTTTTACCGTGGAAT
TACGTCTACTGTTTTGAGAGAAGTACCTGGATACTTTTTCTTCTTTGGTG
GGTATGAAGGAACAAAGTACCTGCTTTCTCAGGGCAATGAAGATCAAGAG
TTAGGTCTTGGAAAAACCATCATTGCTGGTGGAGTGGGTGGTGTTTCCAT
ATGGGCTGCCATTTATCCATTCGATATAATCAAATCAAGAATGCAGGTTT
ATTCAAGTGGTGGAGGAGCAGGTATTGGTTTAATGGAGACATCTCGTCTG
TTGATGAAAGAAGGTGGGGTACGAGCTTTCTACAGTGGCGTTGGACCAAC
GTTGTGTCGAGCGTTCCCTGCATGCGCTGCTCTGTTTGTAGGTTATGAAT
ATTCCAAATCATTTCTTACAAAAGTGACTAGTTAGGCTTATATCACAAtt
tagaagttttttttaattgcacGCACTTAAGATTTCTGTTAAATGCTAGG
CTTAGGTAAATATTATTGGCATTAATACAGTAGGGTATCACTATAATCTA
TTTATTTCAAAGgattttttagagttttttaaTGAGCAAAGGAAATTTGT
ATCTTGTTATTGTAAATAATACCAGGGTGAATTTTTACGTTAGCTATCTA
ATATATATTTGTAACAGAatatttaaagataaaaatgaa Run BLAST on NCBI protein sequence of TCONS_00070193-protein >TCONS_00070193-protein ID=TCONS_00070193-protein|Name=TCONS_00070193-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MQTYPDLYRSSWRCAADIVKKQGFMRFYAGAVPAAAANIAETSVLFLCYG
QCRKVVAWCSGTPLENMGTVHNALSGSFAAFFAAFSLCPLELIKCRMQTL
MENQGTFKNITPFTIIKDVLRTDGFFGFYRGITSTVLREVPGYFFFFGGY
EGTKYLLSQGNEDQELGLGKTIIAGGVGGVSIWAAIYPFDIIKSRMQVYS
SGGGAGIGLMETSRLLMKEGGVRAFYSGVGPTLCRAFPACAALFVGYEYS
KSFLTKVTS Run BLAST on NCBI transcript from alignment at scaffold_516:26435..30096+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070193 ID=TCONS_00070193|Name=TCONS_00070193|organism=Clytia hemisphaerica|type=transcript|length=3662bp|location=Sequence derived from alignment at scaffold_516:26435..30096+ (Clytia hemisphaerica)
CTAATCTTTATCTAAAAGTGTATACAAAGCTATTGTttaaccctagcaaa
gccttttATAAGCAGGGGAATTTGAATAAGAATCTCCTAGGAAGAAAGTT
ATAAAATACCAATCAGCAGGGACGCTTATTAAGTGATGAAAGTTCTCACT
CAAGTTCATCTTGTTATCAAAGGAAGAAGTACTTCcgttttttcttctat
ttttttagGCAAGAAATACAAACATAACCAAACAACCCATCTAGAAACTA
CTGCAAATGGTTTAATAGCTTGATAATCCTTTAAAATCACATCTGGTATA
TATTGAATCTAATAAGAAACATGGCTTCTGAAATTCAATCAATCAGAAAA
GAAGCTATCATTGACTTTACAGCTGGTGCCATTGGTGGCACTTGTTGTGC
ANTCAATCAATCAGAAAAGAAGCTATCATTGACTTTACAGCTGGTGCCAT
TGGTGGTACTTGCTGTGCATATGTCGGTCAACCTTTAGATACAATCAAGG
TCAAAATGCAAACTTACCCAGATTTATATAGAAGTTCATGGAGATGTGCT
GCTGATATTGTTAAAAAACAAGGATTCATGAGATTTTATGCTGGCGCTGT
ACCGGCAGCTGCCGCAAACATAGCCGAAACATCGGTGCTGTTCTTGTGTT
ACGGGCAATGTCGGAAAGTTGTTGCATGGTGTTCAGGGACACCACTGGAA
AATATGGGAACAGTTCATAATGCGCTCTCTGGTTCTTTTGCTGCTTTCTT
TGCCGCTTTTTCGCTCTGTCCACTAGAACTGATCAAATGTCGAATGCAAA
CATTAATGGAGAACCAAGGGACTTTCAAAAACATGTAAGTTTTTAAGAAA
ACTCTGATTCAGTTATTTCTGTCGATTTCTCAATTgttaattttttagtt
ttctttttttagacaGATAGACAACCTAAATCAACTGATCTGAGTTTAGG
ATCCAAAAAAGGGAAGTTTCCTTTCCTAGCTTAATGCTTCTGCAATGATA
TTTAGCCATGCTATCAAGGTAGACACAAGCTATATATAAAATGGCATTAA
AAAAGAGCATAAACAATTTTATACTATAGATGATAAGAGACAATTCTTTC
ATTGTTTTTCATGGAATGATTACATTAGCAGGcaaaaaatattatgacct
aACAAAAATCTAACCTCTTCTCATAttcgttttctatttttttatcaaag
cacGCCGTTCACTATCATCAAGGACGTATTACGTACTGACGGTTTCTTTG
GTTTTTACCGTGGAATTACGTCTACTGTTTTGAGAGAAGTACCTGGATAC
TTTTTCTTCTTTGGTGGGTATGAAGGAACAAAGTACCTGCTTTCTCAGGG
CAATGAAGATCAAGAGTTAGGTATGTGAATACATCATCTCTAGTAAAAGG
TAGATTCTTTTCTAGGTGATAGTGTCTCTATGCTTAATCAGTTCCCTCTG
GCATTAACTATCTATTGTTCAACCCTAAAATAGTTCCATGGGTGCAATGT
ACTGAAATTATTCTAGTTTTATCTTCATTTCGCTATATTGCCTGTTACAA
ATGAGTGTCATCTAGACCCTCTTACACAGGTGGTTGATTTCCAGAACCAT
TTGGTCTAGAAAAATAATCATATACTTACATtcttattggacctaccccg
gtggggtggaggtcctataaattaacgtTTGTCCGTtagttcgtccgttc
gtccgttcgttcgttcgttattagctttcctcgtgattgtcTCATTAGtt
tgttctgattttttgcacaaagatgtggaACTATAAaacctcgaatgtga
cggagcccgattttcgaaaaaaaaataattttgcatgaaagtagggtacc
atcataggtaaaagatggctcaagcagattttttcaaaaaaattttgttg
gctcaaaaaacgcatgtttatctataagaatcactattaataagcatgca
tcaatgttcttagttaaattactcaatttttttatgagatagatgttttt
tgctcatgagggcttacttttgaagaatgtgtgtgtttagacatgaaatt
ttggttgcttggcgtgtttttatagaaaactggccaaattcgatatttat
ttataagcacattatcaattacttaggtattagcttttctcgagattggc
tctttgattctttattttttgcacaaagatgcataactataaaccctcaa
atgtgatggagcccgacttacaaaaaaaaaagatattttcaaaaaaattt
tgttggctcaaaaaacgcatgtttatctataagaatcactattgataaac
atacatcaatgttcttagccaaattactatTATTAGATAGGtgttttttg
ctcacaaagtcttgaatatgaaagaatacttcaagaacatgaaattttga
cgtttctaaacgtttttttataagaaccaaacgactaattttaaaaGATC
GTCACtttttgtgttctgaatgattgtttaatggtcacgctcacgtagat
atcaattatatatgtgttgaatgcataaccaggtaggtccataaaagtat
cacttgttattttACGATCCAGGTCTTGGAAAAACCATCATTGCTGGTGG
AGTGGGTGGTGTTTCCATATGGGCTGCCATTTATCCATTCGATATAATCA
AATCAAGAATGCAGGTATAGTTTTCTACGAAGAAAGTTTCGAGTAATTCG
ATTGTCTGAGAAAGATTATTTAGTAATTCACTTTACTCACTCTCAAACAA
TTACAGTTTAATCTTCGTAACTCGAAtctctccttaactcgaacaagttt
cttcttcttcttctagttccttcagttaacaacGCCCTTAATAACCTTTC
TCCATAACGCGAAATTAATCTAACtaagaacaaatttgtgttccccgtat
GTCTCAAGTTATGGAAATTAATCACGCTGTATTTTTACTTGAAATATTTG
GGATGACTTTGgaaacaatgaaacaatttTGAAGACGAATCTGCCATTTG
ACTTACTTATCAAGTATAACAATATCTTACctcaaaatttcatcttttGG
GAAAAAAGAGTCGACCTACCCTTCCCCTCGCTAGAATTAGTTTACGTCAG
AATAATTGCACACACTGTTAAAATTTGCCGAAAAAGATTGTTCCCCCAGA
CAGGGgttaaaatgttgttctttttatTAACGATAAGATGTCCTACAATT
AGTTTTTTCTCATTCCCAGGTTTATTCAAGTGGTGGAGGAGCAGGTATTG
GTTTAATGGAGACATCTCGTCTGTTGATGAAAGAAGGTGGGGTACGAGCT
TTCTACAGTGGCGTTGGACCAACGTTGTGTCGAGCGTTCCCTGCATGCGC
TGCTCTGTTTGTAGGTTATGAATATTCCAAATCATTTCTTACAAAAGTGA
CTAGTTAGGCTTATATCACAAtttagaagttttttttaattgcacGCACT
TAAGATTTCTGTTAAATGCTAGGCTTAGGTAAATATTATTGGCATTAATA
CAGTAGGGTATCACTATAATCTATTTATTTCAAAGgattttttagagttt
tttaaTGAGCAAAGGAAATTTGTATCTTGTTATTGTAAATAATACCAGGG
TGAATTTTTACGTTAGCTATCTAATATATATTTGTAACAGAatatttaaa
gataaaaatgaa Coding sequence (CDS) from alignment at scaffold_516:26435..30096+ >TCONS_00070193 ID=TCONS_00070193|Name=TCONS_00070193|organism=Clytia hemisphaerica|type=CDS|length=3120bp|location=Sequence derived from alignment at scaffold_516:26435..30096+ (Clytia hemisphaerica)
ATGCAAACTTACCCAGATTTATATAGAAGTTCATGGAGATGTGCTGCTGA
TATTGTTAAAAAACAAGGATTCATGAGATTTTATGCTGGCGCTGTACCGG
CAGCTGCCGCAAACATAGCCGAAACATCGGTGCTGTTCTTGTGTTACGGG
CAATGTCGGAAAGTTGTTGCATGGTGTTCAGGGACACCACTGGAAAATAT
GGGAACAGTTCATAATGCGCTCTCTGGTTCTTTTGCTGCTTTCTTTGCCG
CTTTTTCGCTCTGTCCACTAGAACTGATCAAATGTCGAATGCAAACATTA
ATGGAGAACCAAGGGACTTTCAAAAACATcacGCCGTTCACTATCATCAA
GGACGTATTACGTACTGACGGTTTCTTTGGTTTTTACCGTGGAATTACGT
CTACTGTTTTGAGAGAAGTACCTGGATACTTTTTCTTCTTTGGTGGGTAT
GAAGGAACAAAGTACCTGCTTTCTCAGGGCAATGAAGATCAAGAGTTAGG
TCTTGGAAAAACCATCATTGCTGGTGGAGTGGGTGGTGTTTCCATATGGG
CTGCCATTTATCCATTCGATATAATCAAATCAAGAATGCAGGTTTATTCA
AGTGGTGGAGGAGCAGGTATTGGTTTAATGGAGACATCTCGTCTGTTGAT
GAAAGAAGGTGGGGTACGAGCTTTCTACAGTGGCGTTGGACCAACGTTGT
GTCGAGCGTTCCCTGCATGCGCTGCTCTGTTTGTAGGTTATGAATATTCC
AAATCATTTCTTACAAAAGTGACTAGTTAGATGCAAACTTACCCAGATTT
ATATAGAAGTTCATGGAGATGTGCTGCTGATATTGTTAAAAAACAAGGAT
TCATGAGATTTTATGCTGGCGCTGTACCGGCAGCTGCCGCAAACATAGCC
GAAACATCGGTGCTGTTCTTGTGTTACGGGCAATGTCGGAAAGTTGTTGC
ATGGTGTTCAGGGACACCACTGGAAAATATGGGAACAGTTCATAATGCGC
TCTCTGGTTCTTTTGCTGCTTTCTTTGCCGCTTTTTCGCTCTGTCCACTA
GAACTGATCAAATGTCGAATGCAAACATTAATGGAGAACCAAGGGACTTT
CAAAAACATcacGCCGTTCACTATCATCAAGGACGTATTACGTACTGACG
GTTTCTTTGGTTTTTACCGTGGAATTACGTCTACTGTTTTGAGAGAAGTA
CCTGGATACTTTTTCTTCTTTGGTGGGTATGAAGGAACAAAGTACCTGCT
TTCTCAGGGCAATGAAGATCAAGAGTTAGGTCTTGGAAAAACCATCATTG
CTGGTGGAGTGGGTGGTGTTTCCATATGGGCTGCCATTTATCCATTCGAT
ATAATCAAATCAAGAATGCAGGTTTATTCAAGTGGTGGAGGAGCAGGTAT
TGGTTTAATGGAGACATCTCGTCTGTTGATGAAAGAAGGTGGGGTACGAG
CTTTCTACAGTGGCGTTGGACCAACGTTGTGTCGAGCGTTCCCTGCATGC
GCTGCTCTGTTTGTAGGTTATGAATATTCCAAATCATTTCTTACAAAAGT
GACTAGTTAGATGCAAACTTACCCAGATTTATATAGAAGTTCATGGAGAT
GTGCTGCTGATATTGTTAAAAAACAAGGATTCATGAGATTTTATGCTGGC
GCTGTACCGGCAGCTGCCGCAAACATAGCCGAAACATCGGTGCTGTTCTT
GTGTTACGGGCAATGTCGGAAAGTTGTTGCATGGTGTTCAGGGACACCAC
TGGAAAATATGGGAACAGTTCATAATGCGCTCTCTGGTTCTTTTGCTGCT
TTCTTTGCCGCTTTTTCGCTCTGTCCACTAGAACTGATCAAATGTCGAAT
GCAAACATTAATGGAGAACCAAGGGACTTTCAAAAACATcacGCCGTTCA
CTATCATCAAGGACGTATTACGTACTGACGGTTTCTTTGGTTTTTACCGT
GGAATTACGTCTACTGTTTTGAGAGAAGTACCTGGATACTTTTTCTTCTT
TGGTGGGTATGAAGGAACAAAGTACCTGCTTTCTCAGGGCAATGAAGATC
AAGAGTTAGGTCTTGGAAAAACCATCATTGCTGGTGGAGTGGGTGGTGTT
TCCATATGGGCTGCCATTTATCCATTCGATATAATCAAATCAAGAATGCA
GGTTTATTCAAGTGGTGGAGGAGCAGGTATTGGTTTAATGGAGACATCTC
GTCTGTTGATGAAAGAAGGTGGGGTACGAGCTTTCTACAGTGGCGTTGGA
CCAACGTTGTGTCGAGCGTTCCCTGCATGCGCTGCTCTGTTTGTAGGTTA
TGAATATTCCAAATCATTTCTTACAAAAGTGACTAGTTAGATGCAAACTT
ACCCAGATTTATATAGAAGTTCATGGAGATGTGCTGCTGATATTGTTAAA
AAACAAGGATTCATGAGATTTTATGCTGGCGCTGTACCGGCAGCTGCCGC
AAACATAGCCGAAACATCGGTGCTGTTCTTGTGTTACGGGCAATGTCGGA
AAGTTGTTGCATGGTGTTCAGGGACACCACTGGAAAATATGGGAACAGTT
CATAATGCGCTCTCTGGTTCTTTTGCTGCTTTCTTTGCCGCTTTTTCGCT
CTGTCCACTAGAACTGATCAAATGTCGAATGCAAACATTAATGGAGAACC
AAGGGACTTTCAAAAACATcacGCCGTTCACTATCATCAAGGACGTATTA
CGTACTGACGGTTTCTTTGGTTTTTACCGTGGAATTACGTCTACTGTTTT
GAGAGAAGTACCTGGATACTTTTTCTTCTTTGGTGGGTATGAAGGAACAA
AGTACCTGCTTTCTCAGGGCAATGAAGATCAAGAGTTAGGTCTTGGAAAA
ACCATCATTGCTGGTGGAGTGGGTGGTGTTTCCATATGGGCTGCCATTTA
TCCATTCGATATAATCAAATCAAGAATGCAGGTTTATTCAAGTGGTGGAG
GAGCAGGTATTGGTTTAATGGAGACATCTCGTCTGTTGATGAAAGAAGGT
GGGGTACGAGCTTTCTACAGTGGCGTTGGACCAACGTTGTGTCGAGCGTT
CCCTGCATGCGCTGCTCTGTTTGTAGGTTATGAATATTCCAAATCATTTC
TTACAAAAGTGACTAGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00070193-exon-scaffold_516-1491911889:26435..27268 | TCONS_00070193-exon-scaffold_516-1491911889:26435..27268 | Clytia hemisphaerica | exon |
| TCONS_00070193-exon-scaffold_516-1510915933:26435..27268 | TCONS_00070193-exon-scaffold_516-1510915933:26435..27268 | Clytia hemisphaerica | exon |
| TCONS_00070193-exon-scaffold_516-1575043694:26435..27268 | TCONS_00070193-exon-scaffold_516-1575043694:26435..27268 | Clytia hemisphaerica | exon |
| TCONS_00070193-exon-scaffold_516-1491911889:27635..27804 | TCONS_00070193-exon-scaffold_516-1491911889:27635..27804 | Clytia hemisphaerica | exon |
| TCONS_00070193-exon-scaffold_516-1510915933:27635..27804 | TCONS_00070193-exon-scaffold_516-1510915933:27635..27804 | Clytia hemisphaerica | exon |
| TCONS_00070193-exon-scaffold_516-1575043694:27635..27804 | TCONS_00070193-exon-scaffold_516-1575043694:27635..27804 | Clytia hemisphaerica | exon |
| TCONS_00070193-exon-scaffold_516-1491911889:29007..29098 | TCONS_00070193-exon-scaffold_516-1491911889:29007..29098 | Clytia hemisphaerica | exon |
| TCONS_00070193-exon-scaffold_516-1510915933:29007..29098 | TCONS_00070193-exon-scaffold_516-1510915933:29007..29098 | Clytia hemisphaerica | exon |
| TCONS_00070193-exon-scaffold_516-1575043694:29007..29098 | TCONS_00070193-exon-scaffold_516-1575043694:29007..29098 | Clytia hemisphaerica | exon |
| TCONS_00070193-exon-scaffold_516-1491911889:29654..30096 | TCONS_00070193-exon-scaffold_516-1491911889:29654..30096 | Clytia hemisphaerica | exon |
| TCONS_00070193-exon-scaffold_516-1510915933:29654..30096 | TCONS_00070193-exon-scaffold_516-1510915933:29654..30096 | Clytia hemisphaerica | exon |
| TCONS_00070193-exon-scaffold_516-1575043694:29654..30096 | TCONS_00070193-exon-scaffold_516-1575043694:29654..30096 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_516 | supercontig | scaffold_516:26435..30096 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023395 | Mt_carrier_dom |
| IPR018108 | Mitochondrial_sb/sol_carrier |
Blast
BLAST of TCONS_00070193 vs. Swiss-Prot (Human)
Match: ORNT1 (Mitochondrial ornithine transporter 1 OS=Homo sapiens GN=SLC25A15 PE=1 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 2.203e-66 Identity = 144/288 (50.00%), Postives = 188/288 (65.28%), Query Frame = 2
Query: 419 EAIIDFTAGAIGGTCCAYVGQPLDTIKVKMQTYPDLYRSSWRCAADIVKKQGFMRFYXXXXXXXXXXXXETSVLFLCYGQCRKVVAWCSGTPLE-NMGTVHNALSGSXXXXXXXXSLCPLELIKCRMQTLMENQGTFK----NITPFTIIKDVLRTDGFFGFYRGITSTVLREVPXXXXXXXXXXXTKYLLSQGNEDQELGLGKTIIAGGVGGVSIWAAIYPFDIIKSRMQVYSSGGGAGIGLMETSRLLMKEGGVRAFYSGVGPTLCRAFPACAALFVGYEYSKSFL 1267
+A ID TAGA GGT C GQP DT+KVKMQT+PDLYR C + GF FY G PA ANIAE SVLF+CYG C++VV +G + + + NA +GSFA+ FAA LCP EL+KCR+QT+ E + + K T +++IK +LR DG GFY G++ST+LREVPGYFFFFGGYE ++ + G ELG +++GGVGG+ +W A+YP D IKSR+QV S G G + T ++K G+ A YSG+ PT+ RAFPA ALF+ YEYS+ +
Sbjct: 8 QAAIDLTAGAAGGTACVLTGQPFDTMKVKMQTFPDLYRGLTDCCLKTYSQVGFRGFYKGTSPALIANIAENSVLFMCYGFCQQVVRKVAGLDKQAKLSDLQNAAAGSFASAFAALVLCPTELVKCRLQTMYEMETSGKIAKSQNTVWSVIKSILRKDGPLGFYHGLSSTLLREVPGYFFFFGGYELSRSFFASGRSKDELGPVPLMLSGGVGGICLWLAVYPVDCIKSRIQVLSMSGKQA-GFIRTFINVVKNEGITALYSGLKPTMIRAFPANGALFLAYEYSRKLM 294
The following BLAST results are available for this feature:
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