|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070191 ID=TCONS_00070191|Name=TCONS_00070191|organism=Clytia hemisphaerica|type=transcript|length=1139bp
NNGATATTCATGAAGTCATCGGTGAAAGACGATCAACTCAATTTTTGGTA
GATTTTGGTGAAGAGGATCTCAGCCCAAAGGAAACTTGGCAAAGAAGATA
TCATCCGAACCGGTCATACTTGGTGGCGTTGGTGAGTGTCAAACCAAATC
GTTGAATGGAATCTTCAGTGTCACTGTCCCACTTCACGATGATCAAGAAG
TCACGTTCTCCGGTGTTTGTCTCGATCGTATCACATCTACATTCCCAACA
TATCCATTAGACGTCGTTGAACAAGACATCATTGACTATCACATCTCATC
AGGAGGAACCAGTCCAATTCCAAAGCTTCCAAACAACATTGGTGGTGAAG
TGCATATGATGATTGGAGTCAAATACCTTCGTCATCACCCAAAAATGGTC
ATCCAACTCCCATCAGGTCTTGCATTGTACGAATCGAAATTCAACAATTC
AACTGGGGGAAGAGGAGTGGTCGGTGGACCACATCACAGCTTCACTAAAA
TTCATCAGCAATTCAACACATTGACATCCTCCACATTCTTTTCAAACCAA
TTCAACGTGATTAGAAGCCAATCTGCTGTCCCTCTGCTAGGATTCAGCCA
ATGCAATCCAACAGATCTCGTGCAACAAAATTTCCACGATGAATCACCTA
CccacatttcaacaacaatGAAGATTTTTGAAGAAGTAGAAGCAACAGGT
AGTGAGATATCATATCGCTGCCCAGATTGTCGCAACTGCAAAGCATGCAA
GCAACCATCAAATGATGTCATCAGCTGCAAAGAGGAAATCGAGCAGAGCA
TCATCAATTCATCCATCACCGTTGATTTGGAGAGCAAGACTGCAACAGCA
CTCCTTCCGTTCATAGCAGATCCAGAAGCACGCTTGGTCAACAACAAGGA
CAAGGCAATGAGAACATATCAGCAACAAGTTCGAAAACTCAATCATCCCA
ACAATCAAAAGGACAAGCAAGATGTTCTCGAGTCAGAAGCAAAGCTGCAG
CAACTTGGATATGTTGAATATGTATGCAACCTCCCAAAAGAAGACCAGGA
CCAACTGCAAACTTGTAAGATGCATTATTATATTCCATGGAGAGCCGTTT
GGAAATCTAACTCCTTTAGTACGCCTTGTAGAATTGTGT Run BLAST on NCBI protein sequence of TCONS_00070191-protein >TCONS_00070191-protein ID=TCONS_00070191-protein|Name=TCONS_00070191-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
MMIGVKYLRHHPKMVIQLPSGLALYESKFNNSTGGRGVVGGPHHSFTKIH
QQFNTLTSSTFFSNQFNVIRSQSAVPLLGFSQCNPTDLVQQNFHDESPTH
ISTTMKIFEEVEATGSEISYRCPDCRNCKACKQPSNDVISCKEEIEQSII
NSSITVDLESKTATALLPFIADPEARLVNNKDKAMRTYQQQVRKLNHPNN
QKDKQDVLESEAKLQQLGYVEYVCNLPKEDQDQLQTCKMHYYIPWRAVWK
SNSFSTPCRIV Run BLAST on NCBI transcript from alignment at scaffold_515:36055..37193 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070191 ID=TCONS_00070191|Name=TCONS_00070191|organism=Clytia hemisphaerica|type=transcript|length=1139bp|location=Sequence derived from alignment at scaffold_515:36055..37193 (Clytia hemisphaerica)
ACACAATTCTACAAGGCGTACTAAAGGAGTTAGATTTCCAAACGGCTCTC
CATGGAATATAATAATGCATCTTACAAGTTTGCAGTTGGTCCTGGTCTTC
TTTTGGGAGGTTGCATACATATTCAACATATCCAAGTTGCTGCAGCTTTG
CTTCTGACTCGAGAACATCTTGCTTGTCCTTTTGATTGTTGGGATGATTG
AGTTTTCGAACTTGTTGCTGATATGTTCTCATTGCCTTGTCCTTGTTGTT
GACCAAGCGTGCTTCTGGATCTGCTATGAACGGAAGGAGTGCTGTTGCAG
TCTTGCTCTCCAAATCAACGGTGATGGATGAATTGATGATGCTCTGCTCG
ATTTCCTCTTTGCAGCTGATGACATCATTTGATGGTTGCTTGCATGCTTT
GCAGTTGCGACAATCTGGGCAGCGATATGATATCTCACTACCTGTTGCTT
CTACTTCTTCAAAAATCTTCattgttgttgaaatgtggGTAGGTGATTCA
TCGTGGAAATTTTGTTGCACGAGATCTGTTGGATTGCATTGGCTGAATCC
TAGCAGAGGGACAGCAGATTGGCTTCTAATCACGTTGAATTGGTTTGAAA
AGAATGTGGAGGATGTCAATGTGTTGAATTGCTGATGAATTTTAGTGAAG
CTGTGATGTGGTCCACCGACCACTCCTCTTCCCCCAGTTGAATTGTTGAA
TTTCGATTCGTACAATGCAAGACCTGATGGGAGTTGGATGACCATTTTTG
GGTGATGACGAAGGTATTTGACTCCAATCATCATATGCACTTCACCACCA
ATGTTGTTTGGAAGCTTTGGAATTGGACTGGTTCCTCCTGATGAGATGTG
ATAGTCAATGATGTCTTGTTCAACGACGTCTAATGGATATGTTGGGAATG
TAGATGTGATACGATCGAGACAAACACCGGAGAACGTGACTTCTTGATCA
TCGTGAAGTGGGACAGTGACACTGAAGATTCCATTCAACGATTTGGTTTG
ACACTCACCAACGCCACCAAGTATGACCGGTTCGGATGATATCTTCTTTG
CCAAGTTTCCTTTGGGCTGAGATCCTCTTCACCAAAATCTACCAAAAATT
GAGTTGATCGTCTTTCACCGATGACTTCATGAATATCNN Coding sequence (CDS) from alignment at scaffold_515:36055..37193 >TCONS_00070191 ID=TCONS_00070191|Name=TCONS_00070191|organism=Clytia hemisphaerica|type=CDS|length=783bp|location=Sequence derived from alignment at scaffold_515:36055..37193 (Clytia hemisphaerica)
CACAATTCTACAAGGCGTACTAAAGGAGTTAGATTTCCAAACGGCTCTCC
ATGGAATATAATAATGCATCTTACAAGTTTGCAGTTGGTCCTGGTCTTCT
TTTGGGAGGTTGCATACATATTCAACATATCCAAGTTGCTGCAGCTTTGC
TTCTGACTCGAGAACATCTTGCTTGTCCTTTTGATTGTTGGGATGATTGA
GTTTTCGAACTTGTTGCTGATATGTTCTCATTGCCTTGTCCTTGTTGTTG
ACCAAGCGTGCTTCTGGATCTGCTATGAACGGAAGGAGTGCTGTTGCAGT
CTTGCTCTCCAAATCAACGGTGATGGATGAATTGATGATGCTCTGCTCGA
TTTCCTCTTTGCAGCTGATGACATCATTTGATGGTTGCTTGCATGCTTTG
CAGTTGCGACAATCTGGGCAGCGATATGATATCTCACTACCTGTTGCTTC
TACTTCTTCAAAAATCTTCattgttgttgaaatgtggGTAGGTGATTCAT
CGTGGAAATTTTGTTGCACGAGATCTGTTGGATTGCATTGGCTGAATCCT
AGCAGAGGGACAGCAGATTGGCTTCTAATCACGTTGAATTGGTTTGAAAA
GAATGTGGAGGATGTCAATGTGTTGAATTGCTGATGAATTTTAGTGAAGC
TGTGATGTGGTCCACCGACCACTCCTCTTCCCCCAGTTGAATTGTTGAAT
TTCGATTCGTACAATGCAAGACCTGATGGGAGTTGGATGACCATTTTTGG
GTGATGACGAAGGTATTTGACTCCAATCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070191-exon-scaffold_515-1491911889:36055..37193 | TCONS_00070191-exon-scaffold_515-1491911889:36055..37193 | Clytia hemisphaerica | exon |
| TCONS_00070191-exon-scaffold_515-1510915933:36055..37193 | TCONS_00070191-exon-scaffold_515-1510915933:36055..37193 | Clytia hemisphaerica | exon |
| TCONS_00070191-exon-scaffold_515-1575043694:36055..37193 | TCONS_00070191-exon-scaffold_515-1575043694:36055..37193 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_515 | supercontig | scaffold_515:36055..37193 . |
Blast
The following BLAST results are available for this feature:
|
