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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070186 ID=TCONS_00070186|Name=TCONS_00070186|organism=Clytia hemisphaerica|type=transcript|length=992bp
gtgaaaatcaaaatgaattattattaaaatttgtgaaaatctgaTTTCCT
TGACATCTTGACTCTATGACTGTCAAGTCAGATCTGGAAAGAATGGAAAG
AAAATCATGCAGTACTACACATGTAAATCATTCGTATTCAAATCACCTGA
AGATCGATACACCATCTTGAAGAAGAAGGGATTTTGCGCTCAATGCTTAT
TTCCTGGAGCAGATGCATCTTCGGGAAAACATGTCGATGGAAAGTGCCAA
CACGACTTTGTCTGTGCTCATCCATCCCATCAAAACGACACCATCAAGAA
GCATGTGCTAGTTTGTGAGGAGCACAAGACTCAACCATCAAATCAACAAC
TTCTCGATACCTTTGTCAAGCGTTTCATCAAAAGTCCAGCTNCCCATCAA
AACGACACCATCAAGAAGCATGTGCTAGTTTGTGAGGAGCACAAGACTCA
ACCATCAAATCAACAACTTCTCGATACCTTTGTCAAGCGTTTCATCAAAA
GTCAAGATCTAATGAGGAGTGGTCGGTGGACCACATCACAGCTTCACCAA
AATTCATCAGCAATTCAACACATTGACATCCTCCACattcttttcaaatc
aattcaacATGATTAGAAGCCAATCAGCTGTCCCTCTGCTAGGATTCAGC
CAATGCAATTCAACAGATCTCGTGCAACAAAATTTCCACGATGAATCACC
TACCCACATATTCAACAATACCAAGGTTGCATTAAATTCAAACAGTGGTG
ACACTTCAACTCAATTCAATTGTCAATGTCAAGACGAGGCATCACAAGGA
TCGACTACAGCCAACTCAATTCAACTGGCCAAATCATTCCCCTCAGAAGC
ATTGACGAAGAACTCACCTctcattttcataacttatctATTCGCGAATC
AATTCACCCTGATTCCGACGCAACTCATACTGACTCCGACACAACTCAAA
CTGTTCAACTAGACTCCATAATGGCAGAGCCAAGTGATGAAG Run BLAST on NCBI protein sequence of TCONS_00070186-protein >TCONS_00070186-protein ID=TCONS_00070186-protein|Name=TCONS_00070186-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MQYYTCKSFVFKSPEDRYTILKKKGFCAQCLFPGADASSGKHVDGKCQHD
FVCAHPSHQNDTIKKHVLVCEEHKTQPSNQQLLDTFVKRFIKSPAXHQND
TIKKHVLVCEEHKTQPSNQQLLDTFVKRFIKSQDLMRSGRWTTSQLHQNS
SAIQHIDILHILFKSIQHD Run BLAST on NCBI transcript from alignment at scaffold_515:13690..14811+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070186 ID=TCONS_00070186|Name=TCONS_00070186|organism=Clytia hemisphaerica|type=transcript|length=1122bp|location=Sequence derived from alignment at scaffold_515:13690..14811+ (Clytia hemisphaerica)
gtgaaaatcaaaatgaattattattaaaatttgtgaaaatctgaTTTCCT
TGACATCTTGACTCTATGACTGTCAAGTCAGATCTGGAAAGAATGGAAAG
AAAATCATGCAGTACTACACATGTAAATCATTCGTATTCAAATCACCTGA
AGATCGATACACCATCTTGAAGAAGAAGGGATTTTGCGCTCAATGCTTAT
TTCCTGGAGCAGATGCATCTTCGGGAAAACATGTCGATGGAAAGTGCCAA
CACGACTTTGTCTGTGCTCATCCATCCCATCAAAACGACACCATCAAGAA
GCATGTGCTAGTTTGTGAGGAGCACAAGACTCAACCATCAAATCAACAAC
TTCTCGATACCTTTGTCAAGCGTTTCATCAAAAGTCCAGCTNCCCATCAA
AACGACACCATCAAGAAGCATGTGCTAGTTTGTGAGGAGCACAAGACTCA
ACCATCAAATCAACAACTTCTCGATACCTTTGTCAAGCGTTTCATCAAAA
GTCAAGATCTAATGAGGAGTGGTCGGTGGACCACATCACAGCTTCACCAA
AATTCATCAGCAATTCAACACATTGACATCCTCCACattcttttcaaatc
aattcaacaTGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAACATGATTAGAAGC
CAATCAGCTGTCCCTCTGCTAGGATTCAGCCAATGCAATTCAACAGATCT
CGTGCAACAAAATTTCCACGATGAATCACCTACCCACATATTCAACAATA
CCAAGGTTGCATTAAATTCAAACAGTGGTGACACTTCAACTCAATTCAAT
TGTCAATGTCAAGACGAGGCATCACAAGGATCGACTACAGCCAACTCAAT
TCAACTGGCCAAATCATTCCCCTCAGAAGCATTGACGAAGAACTCACCTc
tcattttcataacttatctATTCGCGAATCAATTCACCCTGATTCCGACG
CAACTCATACTGACTCCGACACAACTCAAACTGTTCAACTAGACTCCATA
ATGGCAGAGCCAAGTGATGAAG Coding sequence (CDS) from alignment at scaffold_515:13690..14811+ >TCONS_00070186 ID=TCONS_00070186|Name=TCONS_00070186|organism=Clytia hemisphaerica|type=CDS|length=1020bp|location=Sequence derived from alignment at scaffold_515:13690..14811+ (Clytia hemisphaerica)
ATGCAGTACTACACATGTAAATCATTCGTATTCAAATCACCTGAAGATCG
ATACACCATCTTGAAGAAGAAGGGATTTTGCGCTCAATGCTTATTTCCTG
GAGCAGATGCATCTTCGGGAAAACATGTCGATGGAAAGTGCCAACACGAC
TTTGTCTGTGCTCATCCATCCCATCAAAACGACACCATCAAGAAGCATGT
GCTAGTTTGTGAGGAGCACAAGACTCAACCATCAAATCAACAACTTCTCG
ATACCTTTGTCAAGCGTTTCATCAAAAGTCCAGCTNCCCATCAAAACGAC
ACCATCAAGAAGCATGTGCTAGTTTGTGAGGAGCACAAGACTCAACCATC
AAATCAACAACTTCTCGATACCTTTGTCAAGCGTTTCATCAAAAGTCAAG
ATCTAATGAGGAGTGGTCGGTGGACCACATCACAGCTTCACCAAAATTCA
TCAGCAATTCAACACATTGACATCCTCCACattcttttcaaatcaattca
acATGATTAGATGCAGTACTACACATGTAAATCATTCGTATTCAAATCAC
CTGAAGATCGATACACCATCTTGAAGAAGAAGGGATTTTGCGCTCAATGC
TTATTTCCTGGAGCAGATGCATCTTCGGGAAAACATGTCGATGGAAAGTG
CCAACACGACTTTGTCTGTGCTCATCCATCCCATCAAAACGACACCATCA
AGAAGCATGTGCTAGTTTGTGAGGAGCACAAGACTCAACCATCAAATCAA
CAACTTCTCGATACCTTTGTCAAGCGTTTCATCAAAAGTCCAGCTNCCCA
TCAAAACGACACCATCAAGAAGCATGTGCTAGTTTGTGAGGAGCACAAGA
CTCAACCATCAAATCAACAACTTCTCGATACCTTTGTCAAGCGTTTCATC
AAAAGTCAAGATCTAATGAGGAGTGGTCGGTGGACCACATCACAGCTTCA
CCAAAATTCATCAGCAATTCAACACATTGACATCCTCCACattcttttca
aatcaattcaacATGATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070186-exon-scaffold_515-1491911889:13690..14297 | TCONS_00070186-exon-scaffold_515-1491911889:13690..14297 | Clytia hemisphaerica | exon |
| TCONS_00070186-exon-scaffold_515-1510915933:13690..14297 | TCONS_00070186-exon-scaffold_515-1510915933:13690..14297 | Clytia hemisphaerica | exon |
| TCONS_00070186-exon-scaffold_515-1575043694:13690..14297 | TCONS_00070186-exon-scaffold_515-1575043694:13690..14297 | Clytia hemisphaerica | exon |
| TCONS_00070186-exon-scaffold_515-1491911889:14428..14811 | TCONS_00070186-exon-scaffold_515-1491911889:14428..14811 | Clytia hemisphaerica | exon |
| TCONS_00070186-exon-scaffold_515-1510915933:14428..14811 | TCONS_00070186-exon-scaffold_515-1510915933:14428..14811 | Clytia hemisphaerica | exon |
| TCONS_00070186-exon-scaffold_515-1575043694:14428..14811 | TCONS_00070186-exon-scaffold_515-1575043694:14428..14811 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_515 | supercontig | scaffold_515:13690..14811 + |
Blast
The following BLAST results are available for this feature:
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