TCONS_00070185 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070185
Unique NameTCONS_00070185
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070185 ID=TCONS_00070185|Name=TCONS_00070185|organism=Clytia hemisphaerica|type=transcript|length=373bp
AACAATTCCAGACACTAAAATCACATGAAGAACCTGACTGTCTAGGGTAC
AGAAACAAATGTTAAACTCATGGTACAATCTACAAAACTGTATGAAGGAG
AACCTTCCAAATCATCAGTACCGAAGTTGTCtacttaaatttcaaaaaca
tggCATAATCTACAAAACTGTATGAAGGAGAACCTTCCAAATCATCAGTA
CCGAAGTTGTCCACTCAAATGTTAAAAGCATGGCATAATCTCCAAAATTG
TATGAAGGAGAACCTTCCAAATCATCAGTACCGAAGTTGTCaactcaaat
tttaaactccTGGTATAATTTACAAAACTGTATGAATAACCGATCATCAC
ATTGGAAATCTGACGAAATCAAG
Run BLAST on NCBI

transcript from alignment at scaffold_514:257857..258229

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070185 ID=TCONS_00070185|Name=TCONS_00070185|organism=Clytia hemisphaerica|type=transcript|length=373bp|location=Sequence derived from alignment at scaffold_514:257857..258229 (Clytia hemisphaerica)
CTTGATTTCGTCAGATTTCCAATGTGATGATCGGTTATTCATACAGTTTT
GTAAATTATACCAggagtttaaaatttgagttGACAACTTCGGTACTGAT
GATTTGGAAGGTTCTCCTTCATACAATTTTGGAGATTATGCCATGCTTTT
AACATTTGAGTGGACAACTTCGGTACTGATGATTTGGAAGGTTCTCCTTC
ATACAGTTTTGTAGATTATGccatgtttttgaaatttaagtaGACAACTT
CGGTACTGATGATTTGGAAGGTTCTCCTTCATACAGTTTTGTAGATTGTA
CCATGAGTTTAACATTTGTTTCTGTACCCTAGACAGTCAGGTTCTTCATG
TGATTTTAGTGTCTGGAATTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043712XLOC_043712Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070185-exon-scaffold_514-1491911889:257857..258229TCONS_00070185-exon-scaffold_514-1491911889:257857..258229Clytia hemisphaericaexon
TCONS_00070185-exon-scaffold_514-1510915933:257857..258229TCONS_00070185-exon-scaffold_514-1510915933:257857..258229Clytia hemisphaericaexon
TCONS_00070185-exon-scaffold_514-1575043694:257857..258229TCONS_00070185-exon-scaffold_514-1575043694:257857..258229Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_514supercontigscaffold_514:257857..258229 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.54137	1.41618	1.76747	0.358118	2.0102	0.714505	1.14664	0.514997	0	0.974904	0	0.0560279	0.145572	0	0.896475	0.874047	1.39421	1.22793	0	0	0.131643	0	0	2.03269	0.703146	0.00749235	0.296557	0.316445	1.72671e-05	1.16484
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070185 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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