TCONS_00070158 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070158
Unique NameTCONS_00070158
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length298

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070158 ID=TCONS_00070158|Name=TCONS_00070158|organism=Clytia hemisphaerica|type=transcript|length=298bp
GTGTTCCGATTGCACAAACAGGcatgaaattaaatttattgatATAAATA
AATTGTCCAGTGAAAACATCGAAACGTTGATGATTCCTACAGAAGTTAGA
ATGTTATCTTTGAAGAGGGCAATATTTGAAACGATATATGGAAATGGTAG
CTTGCTACTGAATTGCTTGTATGCCCAATGCCCAATTTGTGGCACAATTG
TATCTTTGGGCCACTTTAATGATATTTGTCAGAAAAAGGACCATTTAATT
GAACATATCAGAGCAAAACACTTCAGTGATCCAGTGAGAAGTAGCCAC
Run BLAST on NCBI

protein sequence of TCONS_00070158-protein

>TCONS_00070158-protein ID=TCONS_00070158-protein|Name=TCONS_00070158-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
CSDCTNRHEIKFIDINKLSSENIETLMIPTEVRMLSLKRAIFETIYGNGS
LLLNCLYAQCPICGTIVSLGHFNDICQKKDHLIEHIRAKHFSDPVRSSH
Run BLAST on NCBI

transcript from alignment at scaffold_513:620331..620628

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070158 ID=TCONS_00070158|Name=TCONS_00070158|organism=Clytia hemisphaerica|type=transcript|length=298bp|location=Sequence derived from alignment at scaffold_513:620331..620628 (Clytia hemisphaerica)
GTGGCTACTTCTCACTGGATCACTGAAGTGTTTTGCTCTGATATGTTCAA
TTAAATGGTCCTTTTTCTGACAAATATCATTAAAGTGGCCCAAAGATACA
ATTGTGCCACAAATTGGGCATTGGGCATACAAGCAATTCAGTAGCAAGCT
ACCATTTCCATATATCGTTTCAAATATTGCCCTCTTCAAAGATAACATTC
TAACTTCTGTAGGAATCATCAACGTTTCGATGTTTTCACTGGACAATTTA
TTTATatcaataaatttaatttcatgCCTGTTTGTGCAATCGGAACAC

Coding sequence (CDS) from alignment at scaffold_513:620331..620628

>TCONS_00070158 ID=TCONS_00070158|Name=TCONS_00070158|organism=Clytia hemisphaerica|type=CDS|length=297bp|location=Sequence derived from alignment at scaffold_513:620331..620628 (Clytia hemisphaerica)
GTGGCTACTTCTCACTGGATCACTGAAGTGTTTTGCTCTGATATGTTCAA
TTAAATGGTCCTTTTTCTGACAAATATCATTAAAGTGGCCCAAAGATACA
ATTGTGCCACAAATTGGGCATTGGGCATACAAGCAATTCAGTAGCAAGCT
ACCATTTCCATATATCGTTTCAAATATTGCCCTCTTCAAAGATAACATTC
TAACTTCTGTAGGAATCATCAACGTTTCGATGTTTTCACTGGACAATTTA
TTTATatcaataaatttaatttcatgCCTGTTTGTGCAATCGGAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043692XLOC_043692Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070158-exon-scaffold_513-1491911889:620331..620628TCONS_00070158-exon-scaffold_513-1491911889:620331..620628Clytia hemisphaericaexon
TCONS_00070158-exon-scaffold_513-1510915933:620331..620628TCONS_00070158-exon-scaffold_513-1510915933:620331..620628Clytia hemisphaericaexon
TCONS_00070158-exon-scaffold_513-1575043694:620331..620628TCONS_00070158-exon-scaffold_513-1575043694:620331..620628Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070158-proteinTCONS_00070158-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:620331..620628 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	2.21837	0	0	0	0	5.1798	0	0.517199	0	0.167447	0	0	0	0	0	0	0	0	0	0	1.62459	0	0.532065	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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