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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070157 ID=TCONS_00070157|Name=TCONS_00070157|organism=Clytia hemisphaerica|type=transcript|length=3699bp
CCACCTTTATAGATTTGTGCTTACCACCTGCAGGCGGGAAAAAATCCACA
TGACACGAAACATTAACGGTCGCTTACTCCAATATTCTGAAGTGTGGGTT
CTATCCAGCAATTCTGGGAAGTTTCAATAAAGGTTTTTGAGTAATCGTAT
CTTTAGAAGAGCAACACTCTGATTCGATTTTGATCAATGTTCGAGCATTG
ATTGTATACTCCAAGGCACAACCCCTTAAGAAATGACTCTCAGTTGTCCA
TGATCACCTCCAACCCTGAAATCCTTTTTCGACCACTGACACTATCCGGA
ATTTATCCGAATTTTTATAGCTCTCTTGTTAAAAATTAGTCTTTGTCACT
TTTTACCGACGATTCTTTACAGAAcagccccttctcacaaacccactaGA
ATCCCTTCCCACtgggaaaattgtccaaaatatcgtccccagtggaaaat
tatactctacttTTTGTcctcgctgaaaataatcagataagcaaatcctc
actggaaaatattgtgccattttttccatccccaccgAAATTTCTGTGGA
ATTAAAATCCCCAACCGTAAAAAAacataggaatatcaatccgcatcgag
ttttggtccgtttttTATATCCCCGCTTGCTGATAAAATAccatcgggtc
tgtgagaagggagtgttaTAGATAAAATACTAGAGAGCTAAGGGCTATTT
ACGCTTCAATAAAAAAAACGATATTAAACCTTCCAAACATAGAATGATAC
CTATGTACTTTCTACCAAAAAGAGAACATAATATGAAATTTCCAAGTCCT
ATACAAGGAAAATCGCTTTGTAAAAGTGATAAGATTACAGCAAATGGTTA
GGATTTCATGTCCAACTATAGTGAACATTTTAAAATATGTACAGGTCTCC
ATCAAGATCGATGTCTTTGATGAAGAAACTCGTTGACCTCTATGTTTCAA
TTTCTCAAGTTTCTTTTCCCAATAtgtataaaaaattgtaaatttgattT
GATGAATGAAAAGTTTCTGGAAGAACTATGAGAAAACTCACACTTTACAA
ATTATGCTGACACTTTAGTGTGAGATAACGAATTCTATTTTGAGTTTCTT
GTTTGCAGACCTCGTCATAAATTTAACGTACTGTACTGAAATCAGAAATT
CTGATACTACTAATTAAATAGAAACTTATTTCTGCACTGTGTGATAGACT
GAGCACTAGGCTACTCTCAAATATTTGTGACGTGATTAACTTTATTTGTT
GGAGTTCTTCTCCTCATTGCTGAACCCCAGGACTCAACTTTGTAACTTTG
CAGAGCCCGTAACGTTTTTGCTTGTAATCCAAATTTTGTTCAGATTTGAT
AACCGAAATTTCAAATAATCGCTTACTGTACCGGATCAGAAAGATGCACA
TTCGCGGGACATTCgcctttaaaaagaaaagaaaacaataaaaggCTACC
CCTTACAAATCCAGATCTACTCTACTACATACGGTATTTTGAACCGTCTA
CATTCAAAGACCAAGTTTCACAGAAATAAAGATAAATTCTCATGTAATCA
ACAAGGAAAGAAGAGGCATAAAGAAAAAGAAGCCATTTCTGTGCTCGGGA
ATTCAGTAAATTGACGGCATTCAGATAGAGTTGGGAAATGTGGTTTTAGA
CTTGCTTGTATTTCCCCACATGATAGAAAAAGCTGAATGGCATATTGAAG
CAAAAATATGGATATATGAAAGATTGAAAGGACATTTAAAAGATGACCGT
GTCTCCaaattttattcaagtacagattcaaagattttACCTACTGCACA
ATAACAAAGCGGCGAGTTTCTGCTTATTCTTAAACCTTTATTAAaggatt
tgtttttaaataaaagtcaTATCGCTTGCTTActcaattttaaacttttt
tacatTGAttaacacggatgtggagcaagattagtcTGAAATGAGAGACA
CCGTCCTGATACGAAACATGTATCTGGTATGAAACAGGAACAATtacgta
aaaataaaacctttaacagaTTCAAATCTAGGTGAGTATAACCAGAGGAT
CTTCTTTACAATAAACAGAATCACAGAATCAAATCAAGTGTCagcaaaat
ggaaaaatacattaaaattaACCGCGGGAATCCAAATCTCACTTCTTTAT
AGTCTCTAACATAGCTTGGTCACACCCTAAAAAATACATAGAGCAGATGA
TTATGTGAAAATACCATGTGGTACATCAATCATATTCCCAAACTTATTCG
TTTTTCCTGTTAACTCTTAAATTTGTAGTATTGCAGCAAAATGCTCTTTT
CTTCAACACGGTAACTGAAAAATTTAGTATACTATTAAATCTGTTTAAAG
CTAAAACTAATCTAATCTCCATAATCCCCAAATCGCAATACTAAATGAAG
CTGATACGTTTACGCCCTCGTCGAAATAGCGAAATGAAAATCCCCAATTT
TTAACTTAGTAAGTAAATCATTACATGGAATAGAATAAGTATCAAAAGCa
tcaataattttcatttttaacgtAAAATACAATATGGATTGCAATCTTTG
GGAGAAAAGCAATAATACCAATTCTTGTCTTGTCGAACAGACATCGTCTC
GCCTGGGAATTTAATATACtgttacatttttttttataagcattgcactt
ataagcatatctaggctcagatatggggaaaaattaagcatatggcaagc
attgcttgagcctacgaaaaatgttctttttcctgattttggcttttttt
ggctggaattttactgattttcagtatttccctgaATTTATGCTTTgcat
ttaagcatcccctcaagcatttttcagccttattaagctttcgaacTAAG
CATCTCtatttcggatttttgtatgcttataaaaaaaacatgtaaatcag
tttaaagcaaaactaATCTAATCTTTCTAATCCCCAAATAGCAATGCCAA
ACGAAGCTGGTACGCCCTTATCACTCACGTCGAAATAGAGAAATGAAAAT
CCCCAATTTTTAGCTTAGCAAGTAAATCATTACATGAAATAAAATAAGTa
tcaataattttcattttcaacatAAAATACACAGATTAAGCATCGATAAT
TTTCATTCCCAACGTAAAATACACTATGGATTGCAATCTTTCAAACCGAT
AAgataaccctttaactgccgttcgTATTCTTAagggttcgacctatttg
ccagatgtcggcatATAAGTTTCTATAACAAATTCATGATTAATTATAGA
GAAAAACAACCACCTTCATTTTGGAGTTGATGAAAATAAGCCCTTTTtac
aattacaaaaaaaacactCTCCGTCCGTCATAttagtttaaaggttttat
ttttacataagttttcccgtctcatatcagacacatatttcaaatcagga
cagtgtctgcttattgttatatttttctgatttaagcaaaaaatgatttt
attttcatctttctgaccaaccttgctccacatctgtgtcaatccaatgc
gaaaaagcctgcgaattaaaattgacgagtaagcaaactaTATCACTCTT
GGCCTTCAGCCAaaatattgattaaaaaaatctcAGATGAAATGTAGGGA
CAAACATATTATTAAAAACCACAGGAGTAAAGAAGAGGcaaaaaaagggc
aaaaaagggtaaaaaatttGATTCGTAGGTTCATTCAAACAAATAATCT Run BLAST on NCBI transcript from alignment at scaffold_513:545637..549335 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070157 ID=TCONS_00070157|Name=TCONS_00070157|organism=Clytia hemisphaerica|type=transcript|length=3699bp|location=Sequence derived from alignment at scaffold_513:545637..549335 (Clytia hemisphaerica)
AGATTATTTGTTTGAATGAACCTACGAATCaaattttttacccttttttg
ccctttttttgCCTCTTCTTTACTCCTGTGGTTTTTAATAATATGTTTGT
CCCTACATTTCATCTgagatttttttaatcaatatttTGGCTGAAGGCCA
AGAGTGATAtagtttgcttactcgtcaattttaattcgcaggctttttcg
cattggattgacacagatgtggagcaaggttggtcagaaagatgaaaata
aaatcattttttgcttaaatcagaaaaatataacaataagcagacactgt
cctgatttgaaatatgtgtctgatatgagacgggaaaacttatgtaaaaa
taaaacctttaaactaaTATGACGGACGGAGagtgttttttttgtaattg
taAAAAGGGCTTATTTTCATCAACTCCAAAATGAAGGTGGTTGTTTTTCT
CTATAATTAATCATGAATTTGTTATAGAAACTTATatgccgacatctggc
aaataggtcgaaccctTAAGAATAcgaacggcagttaaagggttatcTTA
TCGGTTTGAAAGATTGCAATCCATAGTGTATTTTACGTTGGGAATGAAAA
TTATCGATGCTTAATCTGTGTATTTTatgttgaaaatgaaaattattgat
ACTTATTTTATTTCATGTAATGATTTACTTGCTAAGCTAAAAATTGGGGA
TTTTCATTTCTCTATTTCGACGTGAGTGATAAGGGCGTACCAGCTTCGTT
TGGCATTGCTATTTGGGGATTAGAAAGATTAGATtagttttgctttaaac
tgatttacatgttttttttataagcatacaaaaatccgaaataGAGATGC
TTAgttcgaaagcttaataaggctgaaaaatgcttgaggggatgcttaaa
tgcAAAGCATAAATtcagggaaatactgaaaatcagtaaaattccagcca
aaaaaagccaaaatcaggaaaaagaacatttttcgtaggctcaagcaatg
cttgccatatgcttaatttttccccatatctgagcctagatatgcttata
agtgcaatgcttataaaaaaaaatgtaacaGTATATTAAATTCCCAGGCG
AGACGATGTCTGTTCGACAAGACAAGAATTGGTATTATTGCTTTTCTCCC
AAAGATTGCAATCCATATTGTATTTTacgttaaaaatgaaaattattgat
GCTTTTGATACTTATTCTATTCCATGTAATGATTTACTTACTAAGTTAAA
AATTGGGGATTTTCATTTCGCTATTTCGACGAGGGCGTAAACGTATCAGC
TTCATTTAGTATTGCGATTTGGGGATTATGGAGATTAGATTAGTTTTAGC
TTTAAACAGATTTAATAGTATACTAAATTTTTCAGTTACCGTGTTGAAGA
AAAGAGCATTTTGCTGCAATACTACAAATTTAAGAGTTAACAGGAAAAAC
GAATAAGTTTGGGAATATGATTGATGTACCACATGGTATTTTCACATAAT
CATCTGCTCTATGTATTTTTTAGGGTGTGACCAAGCTATGTTAGAGACTA
TAAAGAAGTGAGATTTGGATTCCCGCGGTtaattttaatgtatttttcca
ttttgctGACACTTGATTTGATTCTGTGATTCTGTTTATTGTAAAGAAGA
TCCTCTGGTTATACTCACCTAGATTTGAAtctgttaaaggttttattttt
acgtaATTGTTCCTGTTTCATACCAGATACATGTTTCGTATCAGGACGGT
GTCTCTCATTTCAgactaatcttgctccacatccgtgttaaTCAatgtaa
aaaagtttaaaattgagTAAGCAAGCGATAtgacttttatttaaaaacaa
atcctTTAATAAAGGTTTAAGAATAAGCAGAAACTCGCCGCTTTGTTATT
GTGCAGTAGGTaaaatctttgaatctgtacttgaataaaatttGGAGACA
CGGTCATCTTTTAAATGTCCTTTCAATCTTTCATATATCCATATTTTTGC
TTCAATATGCCATTCAGCTTTTTCTATCATGTGGGGAAATACAAGCAAGT
CTAAAACCACATTTCCCAACTCTATCTGAATGCCGTCAATTTACTGAATT
CCCGAGCACAGAAATGGCTTCTTTTTCTTTATGCCTCTTCTTTCCTTGTT
GATTACATGAGAATTTATCTTTATTTCTGTGAAACTTGGTCTTTGAATGT
AGACGGTTCAAAATACCGTATGTAGTAGAGTAGATCTGGATTTGTAAGGG
GTAGccttttattgttttcttttctttttaaaggcGAATGTCCCGCGAAT
GTGCATCTTTCTGATCCGGTACAGTAAGCGATTATTTGAAATTTCGGTTA
TCAAATCTGAACAAAATTTGGATTACAAGCAAAAACGTTACGGGCTCTGC
AAAGTTACAAAGTTGAGTCCTGGGGTTCAGCAATGAGGAGAAGAACTCCA
ACAAATAAAGTTAATCACGTCACAAATATTTGAGAGTAGCCTAGTGCTCA
GTCTATCACACAGTGCAGAAATAAGTTTCTATTTAATTAGTAGTATCAGA
ATTTCTGATTTCAGTACAGTACGTTAAATTTATGACGAGGTCTGCAAACA
AGAAACTCAAAATAGAATTCGTTATCTCACACTAAAGTGTCAGCATAATT
TGTAAAGTGTGAGTTTTCTCATAGTTCTTCCAGAAACTTTTCATTCATCA
aatcaaatttacaattttttatacaTATTGGGAAAAGAAACTTGAGAAAT
TGAAACATAGAGGTCAACGAGTTTCTTCATCAAAGACATCGATCTTGATG
GAGACCTGTACATATTTTAAAATGTTCACTATAGTTGGACATGAAATCCT
AACCATTTGCTGTAATCTTATCACTTTTACAAAGCGATTTTCCTTGTATA
GGACTTGGAAATTTCATATTATGTTCTCTTTTTGGTAGAAAGTACATAGG
TATCATTCTATGTTTGGAAGGTTTAATATCGTTTTTTTTATTGAAGCGTA
AATAGCCCTTAGCTCTCTAGTATTTTATCTAtaacactcccttctcacag
acccgatggTATTTTATCAGCAAGCGGGGATATAaaaaacggaccaaaac
tcgatgcggattgatattcctatgtTTTTTTACGGTTGGGGATTTTAATT
CCACAGAAATTTcggtggggatggaaaaaatggcacaatattttccagtg
aggatttgcttatctgattattttcagcgaggACAAAaagtagagtataa
ttttccactggggacgatattttggacaattttcccaGTGGGAAGGGATT
CtagtgggtttgtgagaaggggctgTTCTGTAAAGAATCGTCGGTAAAAA
GTGACAAAGACTAATTTTTAACAAGAGAGCTATAAAAATTCGGATAAATT
CCGGATAGTGTCAGTGGTCGAAAAAGGATTTCAGGGTTGGAGGTGATCAT
GGACAACTGAGAGTCATTTCTTAAGGGGTTGTGCCTTGGAGTATACAATC
AATGCTCGAACATTGATCAAAATCGAATCAGAGTGTTGCTCTTCTAAAGA
TACGATTACTCAAAAACCTTTATTGAAACTTCCCAGAATTGCTGGATAGA
ACCCACACTTCAGAATATTGGAGTAAGCGACCGTTAATGTTTCGTGTCAT
GTGGATTTTTTCCCGCCTGCAGGTGGTAAGCACAAATCTATAAAGGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070157-exon-scaffold_513-1491911889:545637..549335 | TCONS_00070157-exon-scaffold_513-1491911889:545637..549335 | Clytia hemisphaerica | exon |
| TCONS_00070157-exon-scaffold_513-1510915933:545637..549335 | TCONS_00070157-exon-scaffold_513-1510915933:545637..549335 | Clytia hemisphaerica | exon |
| TCONS_00070157-exon-scaffold_513-1575043694:545637..549335 | TCONS_00070157-exon-scaffold_513-1575043694:545637..549335 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_513 | supercontig | scaffold_513:545637..549335 . |
Blast
The following BLAST results are available for this feature:
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