TCONS_00070154 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070154
Unique NameTCONS_00070154
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length517

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070154 ID=TCONS_00070154|Name=TCONS_00070154|organism=Clytia hemisphaerica|type=transcript|length=517bp
GATAGTTTTTGTGTGGTTTCAAATAGATTAAGCAACAAGTTTGGTCACAT
CAgttcttgaaagaaaaaaaagctgGTCTTCAAAAATTTGATGATTATTT
CAAAATACGAAGTTTGAATTTGTAAAATTAGGAAAATTGTATACATAGGT
GATTTTTAACATCAGAAGTTCACCTTTTTTTCGAATTCTCTCTTGGAGCT
TGTTTAAAGTCCTCCTCTGAAAGAGCTTAGAAGCGCCGATTAACAGGAGT
AGGAGCAGATATAACACAAATAACATTATCAGAAGAGTATTCATTGATAT
CCGGAGTATTAGGGTGAACAAAAGCattcttttcattctttttagcTGAC
ATGACGCTTCTTAGCTCTTTCAGAGGAGGACTTTAAACAAGCTCTAAGAC
AGAATTCGAAAAAAGGTGAATTTCTGATGTTAAAAATCACCTATGTATAc
aattttcctaatttttacAAATTCAAACTTCGTATTTTGAAATAATCATC
AAATTTTTGAAGACcag
Run BLAST on NCBI

transcript from alignment at scaffold_513:444825..445341

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070154 ID=TCONS_00070154|Name=TCONS_00070154|organism=Clytia hemisphaerica|type=transcript|length=517bp|location=Sequence derived from alignment at scaffold_513:444825..445341 (Clytia hemisphaerica)
ctgGTCTTCAAAAATTTGATGATTATTTCAAAATACGAAGTTTGAATTTg
taaaaattaggaaaattgTATACATAGGTGATTTTTAACATCAGAAATTC
ACCTTTTTTCGAATTCTGTCTTAGAGCTTGTTTAAAGTCCTCCTCTGAAA
GAGCTAAGAAGCGTCATGTCAgctaaaaagaatgaaaagaatGCTTTTGT
TCACCCTAATACTCCGGATATCAATGAATACTCTTCTGATAATGTTATTT
GTGTTATATCTGCTCCTACTCCTGTTAATCGGCGCTTCTAAGCTCTTTCA
GAGGAGGACTTTAAACAAGCTCCAAGAGAGAATTCGAAAAAAAGGTGAAC
TTCTGATGTTAAAAATCACCTATGTATACAATTTTCCTAATTTTACAAAT
TCAAACTTCGTATTTTGAAATAATCATCAAATTTTTGAAGACcagctttt
ttttctttcaagaacTGATGTGACCAAACTTGTTGCTTAATCTATTTGAA
ACCACACAAAAACTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043688XLOC_043688Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070154-exon-scaffold_513-1491911889:444825..445341TCONS_00070154-exon-scaffold_513-1491911889:444825..445341Clytia hemisphaericaexon
TCONS_00070154-exon-scaffold_513-1510915933:444825..445341TCONS_00070154-exon-scaffold_513-1510915933:444825..445341Clytia hemisphaericaexon
TCONS_00070154-exon-scaffold_513-1575043694:444825..445341TCONS_00070154-exon-scaffold_513-1575043694:444825..445341Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:444825..445341 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.115187	0.336978	0.130421	0.255193	1.39803	1.47299	2.96183	2.07962	0.388265	0	0.466801	0.843856	0.766076	0.636462	1.17672	0.210576	0.518825	0.531779	1.22447	1.02505	2.00312	0.977801	1.05657	0.480289	0.123672	0.55187	2.36917	1.85419	2.42913	1.17232
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070154 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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