TCONS_00070149 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070149
Unique NameTCONS_00070149
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070149 ID=TCONS_00070149|Name=TCONS_00070149|organism=Clytia hemisphaerica|type=transcript|length=430bp
gtacaaccccccccccttattatggttttggtaccatcttttaaatgaaa
aatgcgTATCTTGAAACAGTTGCTTTTCGGAAATTTTGTTTCTTCTCGAc
tattatttagaatttttcatTGAGTCTACCAGTTATCATTTTTGTTCAAA
TAATTAGGAATTTATTTCTTTGTTATTAGTTTTTACTTTTAGTTCATTTT
GTTATAATCCATTTTTGTTGACCTGCAAGCTATTTTATTcagattaactt
tcgcgagataTTAGATTTAGTAgtggaaaattctacaaaattTTCCCTCG
TATATAATATTTTCTACTTCTTGCAAAAACTGGGTCTTTCCGTGGTAGAA
AACGTCACGTCAtaaatttaatgaattttgcgattttactatttttttat
ttggattttcTCTCAAAACTAGCTACATGG
Run BLAST on NCBI

transcript from alignment at scaffold_513:363467..363896

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070149 ID=TCONS_00070149|Name=TCONS_00070149|organism=Clytia hemisphaerica|type=transcript|length=430bp|location=Sequence derived from alignment at scaffold_513:363467..363896 (Clytia hemisphaerica)
CCATGTAGCTAGTTTTGAGAgaaaatccaaataaaaaaatagtaaaatcg
caaaattcattaaatttaTGACGTGACGTTTTCTACCACGGAAAGACCCA
GTTTTTGCAAGAAGTAGAAAATATTATATACGAGGGAAaattttgtagaa
ttttccacTACTAAATCTAAtatctcgcgaaagttaatctgAATAAAATA
GCTTGCAGGTCAACAAAAATGGATTATAACAAAATGAACTAAAAGTAAAA
ACTAATAACAAAGAAATAAATTCCTAATTATTTGAACAAAAATGATAACT
GGTAGACTCAatgaaaaattctaaataatagTCGAGAAGAAACAAAATTT
CCGAAAAGCAACTGTTTCAAGATAcgcatttttcatttaaaagatggtac
caaaaccataataaggggggggggttgtac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043683XLOC_043683Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070149-exon-scaffold_513-1491911889:363467..363896TCONS_00070149-exon-scaffold_513-1491911889:363467..363896Clytia hemisphaericaexon
TCONS_00070149-exon-scaffold_513-1510915933:363467..363896TCONS_00070149-exon-scaffold_513-1510915933:363467..363896Clytia hemisphaericaexon
TCONS_00070149-exon-scaffold_513-1575043694:363467..363896TCONS_00070149-exon-scaffold_513-1575043694:363467..363896Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:363467..363896 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.69225	2.50472	0.908817	1.06696	0.432975	0	0	0.19322	0.811667	1.00538	0.650565	0.53457	0.533827	0.221754	0.364623	0.0978241	0	0.370561	0	0.357146	0.620849	0.227121	1.10438	0.669363	0.517071	0	0.440245	0.469841	0.712715	1.27075
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070149 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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