TCONS_00070148 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070148
Unique NameTCONS_00070148
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1777

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070148 ID=TCONS_00070148|Name=TCONS_00070148|organism=Clytia hemisphaerica|type=transcript|length=1777bp
tttcaggcttcagaagaaaattgttttgctttGCTCTACAATCACGTGAT
TTTGACTTCATGTACCTTGTTACGGGGATACTCATGATTTCCCATTCTAT
TCTTATATTTTTCAgctacaaagaaaaacaaaaattaaattaaataaaca
aaatattgaaattatacGGAAAGAAAATGATGGATTGAATTTTACTATGT
GAACATGTGTGAATTGCattttgattgtgtttgattgtttttaaacTTGC
ATATTAGTTTTGGgttgttttaaaaatcaaagaagAGTCATGGATAATTA
TACTATTCTTGGTCGGATCGGAGAAGGAGCTCATGGTATTGTCTTCAAAG
CTAAGAAAAAGCAAAGCGGTGAAGTGGTTGCTCTAAAGAAAATTGCGTTA
CGGAAGCTAGAAGATGGTGTCCCAAACACTGTTATTAGGGAGATAAAAGC
TTTGCAACAGATTGAGCATCCAAATGTGGTCCGGCTGTATGATGTGTTCC
CGTCCGGTGCTGGGTTTGTATTAGTATTCGAATTCATGTTAACAGATCTG
TCTGAGATTCTACGGAACAGTGTTTACTCGCTGACGAAATCTCACGTTAA
AATGTACATGCTAATGTTGTTAAAAGGCATTTCTTATTGCCACAAGCGTA
ATCTGATGCATCGCGATTTAAAACCAGCGAATCTGTTGATCGCATTAAAT
GGGGAGCTAAAGATTGCCGATTTTGGTCTAGCACGTGTGTATATGCATAA
CGAAAGCGGGCGACAGTATTCCCATCAGGTTGCCACTAGATGGTATCGAG
CGCCCGAGCTGCTTTACGGATCTCGCAGCTATGACACGGGGGTTGATTTA
TGGGCTATTGGTGCCATCTTTGGGGAATTGTTAAACAACTCGCCGCTTTT
CCCAGGGGAAAGTGATATTGAACAGCTGTGTTGCGTATTAAAAGCACTAG
GGACACCAAACGAAGAAATCTGGCCTGGTTTAAAAGAGCTCCCTGATTAC
AATAAAATCACATTCCCTGAAAATCAACCTGTCCCGATGAATCAGCTCGT
TCCTGACGCGTCCGAAATTGAACTTGATCTTCTCCAACAGTTTCTGGTTT
ATGATTCGAAGAAACGAATTCTTGCAAAAGATGCTTTACTCCATCCGTTT
TTCTTCACGGAACCTTTGCCGGCACACCATTCAGAAATCAAACTCGCTGT
CCCAGACCTGAAAAATAAGAATCGCCTAGGTGGAAAAACTTTTGATGTAA
CTATTCCTGTTGAAAAATCGCTGGTTTCGAAAGAGCTTATTGCACCATAT
TCCTCAATTTTCAAGTGATATACTAACACTATTCAGTATATGAAACGTTG
AGGAAGATATCGGCTTGCTTTATAAATCGGAGTTATGAAATACCTTCAAT
AAAGGTATTTGTTTTCAAACGAATCTACATCGAAAAAAGAGATTGACGTC
TTTGAAGAGCTTCTTGGCATTAGAGGATTCAAAAGCAATTGTCCTGAGCT
GTATTTCTAAAGACCTTTTTAAAAAGCTATGGATAAACTTACTATGGTTT
GTTCACTATTTTGTAATTGTCATTACCTTGATGACTTTTTAATTTAACTT
CAATTAATTTATTTGTAATTTTGTAAATAACTTTAttcggatttttaaat
ttgtagattttgaACATATAATGTGAAATAAGGATGTGTGTAATATAAAA
ATGTGTAGTAGCCATAATATTATAGGGAACCACTTTGGTAACCTATTGGA
TTTGCTTGTGCTCAGAATCactcaaaa
Run BLAST on NCBI

protein sequence of TCONS_00070148-protein

>TCONS_00070148-protein ID=TCONS_00070148-protein|Name=TCONS_00070148-protein|organism=Clytia hemisphaerica|type=polypeptide|length=342bp
MDNYTILGRIGEGAHGIVFKAKKKQSGEVVALKKIALRKLEDGVPNTVIR
EIKALQQIEHPNVVRLYDVFPSGAGFVLVFEFMLTDLSEILRNSVYSLTK
SHVKMYMLMLLKGISYCHKRNLMHRDLKPANLLIALNGELKIADFGLARV
YMHNESGRQYSHQVATRWYRAPELLYGSRSYDTGVDLWAIGAIFGELLNN
SPLFPGESDIEQLCCVLKALGTPNEEIWPGLKELPDYNKITFPENQPVPM
NQLVPDASEIELDLLQQFLVYDSKKRILAKDALLHPFFFTEPLPAHHSEI
KLAVPDLKNKNRLGGKTFDVTIPVEKSLVSKELIAPYSSIFK
Run BLAST on NCBI

transcript from alignment at scaffold_513:349735..351511

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070148 ID=TCONS_00070148|Name=TCONS_00070148|organism=Clytia hemisphaerica|type=transcript|length=1777bp|location=Sequence derived from alignment at scaffold_513:349735..351511 (Clytia hemisphaerica)
ttttgagtGATTCTGAGCACAAGCAAATCCAATAGGTTACCAAAGTGGTT
CCCTATAATATTATGGCTACTACACATTTTTATATTACACACATCCTTAT
TTCACATTATATGTtcaaaatctacaaatttaaaaatccgaaTAAAGTTA
TTTACAAAATTACAAATAAATTAATTGAAGTTAAATTAAAAAGTCATCAA
GGTAATGACAATTACAAAATAGTGAACAAACCATAGTAAGTTTATCCATA
GCTTTTTAAAAAGGTCTTTAGAAATACAGCTCAGGACAATTGCTTTTGAA
TCCTCTAATGCCAAGAAGCTCTTCAAAGACGTCAATCTCTTTTTTCGATG
TAGATTCGTTTGAAAACAAATACCTTTATTGAAGGTATTTCATAACTCCG
ATTTATAAAGCAAGCCGATATCTTCCTCAACGTTTCATATACTGAATAGT
GTTAGTATATCACTTGAAAATTGAGGAATATGGTGCAATAAGCTCTTTCG
AAACCAGCGATTTTTCAACAGGAATAGTTACATCAAAAGTTTTTCCACCT
AGGCGATTCTTATTTTTCAGGTCTGGGACAGCGAGTTTGATTTCTGAATG
GTGTGCCGGCAAAGGTTCCGTGAAGAAAAACGGATGGAGTAAAGCATCTT
TTGCAAGAATTCGTTTCTTCGAATCATAAACCAGAAACTGTTGGAGAAGA
TCAAGTTCAATTTCGGACGCGTCAGGAACGAGCTGATTCATCGGGACAGG
TTGATTTTCAGGGAATGTGATTTTATTGTAATCAGGGAGCTCTTTTAAAC
CAGGCCAGATTTCTTCGTTTGGTGTCCCTAGTGCTTTTAATACGCAACAC
AGCTGTTCAATATCACTTTCCCCTGGGAAAAGCGGCGAGTTGTTTAACAA
TTCCCCAAAGATGGCACCAATAGCCCATAAATCAACCCCCGTGTCATAGC
TGCGAGATCCGTAAAGCAGCTCGGGCGCTCGATACCATCTAGTGGCAACC
TGATGGGAATACTGTCGCCCGCTTTCGTTATGCATATACACACGTGCTAG
ACCAAAATCGGCAATCTTTAGCTCCCCATTTAATGCGATCAACAGATTCG
CTGGTTTTAAATCGCGATGCATCAGATTACGCTTGTGGCAATAAGAAATG
CCTTTTAACAACATTAGCATGTACATTTTAACGTGAGATTTCGTCAGCGA
GTAAACACTGTTCCGTAGAATCTCAGACAGATCTGTTAACATGAATTCGA
ATACTAATACAAACCCAGCACCGGACGGGAACACATCATACAGCCGGACC
ACATTTGGATGCTCAATCTGTTGCAAAGCTTTTATCTCCCTAATAACAGT
GTTTGGGACACCATCTTCTAGCTTCCGTAACGCAATTTTCTTTAGAGCAA
CCACTTCACCGCTTTGCTTTTTCTTAGCTTTGAAGACAATACCATGAGCT
CCTTCTCCGATCCGACCAAGAATAGTATAATTATCCATGACTcttctttg
atttttaaaacaacCCAAAACTAATATGCAAgtttaaaaacaatcaaaca
caatcaaaatGCAATTCACACATGTTCACATAGTAAAATTCAATCCATCA
TTTTCTTTCCgtataatttcaatattttgtttatttaatttaatttttgt
ttttctttgtagcTGAAAAATATAAGAATAGAATGGGAAATCATGAGTAT
CCCCGTAACAAGGTACATGAAGTCAAAATCACGTGATTGTAGAGCaaagc
aaaacaattttcttctgaagcctgaaa

Coding sequence (CDS) from alignment at scaffold_513:349735..351511

>TCONS_00070148 ID=TCONS_00070148|Name=TCONS_00070148|organism=Clytia hemisphaerica|type=CDS|length=1029bp|location=Sequence derived from alignment at scaffold_513:349735..351511 (Clytia hemisphaerica)
TCACTTGAAAATTGAGGAATATGGTGCAATAAGCTCTTTCGAAACCAGCG
ATTTTTCAACAGGAATAGTTACATCAAAAGTTTTTCCACCTAGGCGATTC
TTATTTTTCAGGTCTGGGACAGCGAGTTTGATTTCTGAATGGTGTGCCGG
CAAAGGTTCCGTGAAGAAAAACGGATGGAGTAAAGCATCTTTTGCAAGAA
TTCGTTTCTTCGAATCATAAACCAGAAACTGTTGGAGAAGATCAAGTTCA
ATTTCGGACGCGTCAGGAACGAGCTGATTCATCGGGACAGGTTGATTTTC
AGGGAATGTGATTTTATTGTAATCAGGGAGCTCTTTTAAACCAGGCCAGA
TTTCTTCGTTTGGTGTCCCTAGTGCTTTTAATACGCAACACAGCTGTTCA
ATATCACTTTCCCCTGGGAAAAGCGGCGAGTTGTTTAACAATTCCCCAAA
GATGGCACCAATAGCCCATAAATCAACCCCCGTGTCATAGCTGCGAGATC
CGTAAAGCAGCTCGGGCGCTCGATACCATCTAGTGGCAACCTGATGGGAA
TACTGTCGCCCGCTTTCGTTATGCATATACACACGTGCTAGACCAAAATC
GGCAATCTTTAGCTCCCCATTTAATGCGATCAACAGATTCGCTGGTTTTA
AATCGCGATGCATCAGATTACGCTTGTGGCAATAAGAAATGCCTTTTAAC
AACATTAGCATGTACATTTTAACGTGAGATTTCGTCAGCGAGTAAACACT
GTTCCGTAGAATCTCAGACAGATCTGTTAACATGAATTCGAATACTAATA
CAAACCCAGCACCGGACGGGAACACATCATACAGCCGGACCACATTTGGA
TGCTCAATCTGTTGCAAAGCTTTTATCTCCCTAATAACAGTGTTTGGGAC
ACCATCTTCTAGCTTCCGTAACGCAATTTTCTTTAGAGCAACCACTTCAC
CGCTTTGCTTTTTCTTAGCTTTGAAGACAATACCATGAGCTCCTTCTCCG
ATCCGACCAAGAATAGTATAATTATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043682XLOC_043682Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070148-proteinTCONS_00070148-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070148-exon-scaffold_513-1491911889:349735..351511TCONS_00070148-exon-scaffold_513-1491911889:349735..351511Clytia hemisphaericaexon
TCONS_00070148-exon-scaffold_513-1510915933:349735..351511TCONS_00070148-exon-scaffold_513-1510915933:349735..351511Clytia hemisphaericaexon
TCONS_00070148-exon-scaffold_513-1575043694:349735..351511TCONS_00070148-exon-scaffold_513-1575043694:349735..351511Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:349735..351511 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.8787	10.4583	7.94172	7.49403	10.4658	8.17378	11.9558	13.3987	12.2408	13.627	14.7626	10.8647	5.73326	5.29769	4.2141	4.31555	4.58604	4.2479	6.18138	6.72005	5.7972	6.40227	7.13423	6.36812	9.08545	10.9704	8.71799	6.39035	4.59572	2.73774
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR017441Protein_kinase_ATP_BS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00070148 vs. Swiss-Prot (Human)
Match: CDK20 (Cyclin-dependent kinase 20 OS=Homo sapiens GN=CDK20 PE=1 SV=1)

HSP 1 Score: 421.394 bits (1082), Expect = 1.078e-142
Identity = 209/350 (59.71%), Postives = 263/350 (75.14%), Query Frame = 2 
Query:  290 MDNYTILGRIGEGAHGIVFKAKKKQSGEVVALKKIALRKLEDGVPNTVIREIKALQQIE-HPNVVRLYDVFPSGAGFVLVFEFMLTDLSEILRNSVYSLTKSHVKMYMLMLLKGISYCHKRNLMHRDLKPANLLIALNGELKIADFGLARVYMHNESGRQYSHQVATRWYRAPELLYGSRSYDTGVDLWAIGAIFGELLNNSPLFPGESDIEQLCCVLKALGTPNEEIWPGLKELPDYNKITFPENQPVPMNQLVPDASEIELDLLQQFLVYDSKKRILAKDALLHPFFFTEPLPAHHSEIKLAVPDLKNKNRLGGKT------------FDVTIPVEKSLVSKELIAPY 1300
            MD Y ILGRIGEGAHGIVFKAK  ++GE+VALKK+ALR+LEDG PN  +REIKALQ++E +  VV+L  VFP G GFVL FEFML+DL+E++R++   L ++ VK Y+ MLLKG+++CH  N++HRDLKPANLLI+ +G+LKIADFGLARV+  + S R Y+HQVATRWYRAPELLYG+R YD GVDLW++G I GELLN SPLFPG++DIEQLC VL+ LGTPN ++WP L ELPDYNKI+F E  P+P+ +++PD S   LDLL QFL+Y   +RI A  ALLH +FFT PLPAH SE+ +         RLGG              F V  P+E+SL++ ELI P+
Sbjct:    1 MDQYCILGRIGEGAHGIVFKAKHVETGEIVALKKVALRRLEDGFPNQALREIKALQEMEDNQYVVQLKAVFPHGGGFVLAFEFMLSDLAEVVRHAQRPLAQAQVKSYLQMLLKGVAFCHANNIVHRDLKPANLLISASGQLKIADFGLARVFSPDGS-RLYTHQVATRWYRAPELLYGARQYDQGVDLWSVGCIMGELLNGSPLFPGKNDIEQLCYVLRILGTPNPQVWPELTELPDYNKISFKEQVPMPLEEVLPDVSPQALDLLGQFLLYPPHQRIAASKALLHQYFFTAPLPAHPSELPI-------PQRLGGPAPKAHPGPPHIHDFHVDRPLEESLLNPELIRPF 342
The following BLAST results are available for this feature:
BLAST of TCONS_00070148 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDK201.078e-14259.71Cyclin-dependent kinase 20 OS=Homo sapiens GN=CDK2... [more]
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