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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070145 ID=TCONS_00070145|Name=TCONS_00070145|organism=Clytia hemisphaerica|type=transcript|length=2255bp
TAGATTGTTTATTGAGTTGGAGATGGATGCTGCAAGGGTTTCCCATTGCA
TCATGGAGAGTCTTTCAAGGTGGACAGATTTCTCCAATGATTTTCGAATT
TCTCTAATCTTTCTTTCGACTCGACCATGGAAGTTGTGTCCACCAACTGG
GCAGGTACTGAACTCGATAGATGATTTTGCCTCAATCTTGGCCTTGATGT
CTTGGAAGTTGAGTTGCATTGACTTACATCCCTTGAGAAGCTGACTCCCT
TCATCAACAAGTAATTTCTTTGGGTAGCCAACTTCACATGCCAAACGTGT
GAATGCTTGCACAAAGGATGTCGTTGTGTAATCTTCCATCAGCTTGATCT
TCACGGCAGTTGTGGTTGCGCAACAGAAAACGATTAACCAGATTTTAACT
GTTGTTCGTTTGTGATGATTTGAGTAGGATAAAAATGGTCCAGCCAAGTC
GGTTTGGGAGCAATAGAAGGCTGGAGCGATGTTGAGACTGTCTAGTGGCG
TGGGCCCCATAGATACATCAAGTTGTTGTTTCATCAAGAATCGACATTTG
GCGCATAAGGATCGAATCTGTTTCACGAGGTATCTTCCTTCAATGATTTA
TGCTACTTGAAGGATATATCTCCAAGTGGTTTCAACTCCTGTGTGGCTGA
CTGTCGGATGATTCCAATGGATGTCGTTTACAATGGCATATGCCAGCGGT
GAATGTCGATCGATGATTGGTACATGAAAGTGAAGTGCTCCTAGATCCTT
CATGACATTTGTTGCATTGCCAAGAATCGTGACGTTATCTGTTGGAAGAA
TTCGTCCTGTATAGTACAAGATTCCATCTTTCATTTCCGAGATTTTCTTC
ACCTTGTTCGTAGGTACAAAGGTGTTGATTTCCAATGTTGCCTTTCTGAA
GAGGTAATTCCTTGCTTCATCTAAGTCATCCTCTTGAATCTTTGTTTGAA
GATGTTTCGGGCGAAGTGATGAGATCTTGAGATgagttttgatgaatttt
ctaaTGATAACCAAGATACGTACAATAGAAGAAAATTTCCTGGCGTTTGG
ATCAACGAGATAATTTGAAAGCTTGTATCGTTTAGCGACCTCATCTGCTA
TGATGATTGAAGATGAAAAGAATGACTTCGCTTCTGGATTGCATTCTTTA
TAAGCCAATTGACGTTCTTGAGCACCGAGTTGGATCTTACCCTTTGATAG
GGATGGAAACAGTGTAGAAGGTAACTTCATCCAACTGTATCCATTGATCC
AGTCTGATTCTTTATTGATGGTGTCGACAGATGAGAATCTGCGAGTTCCG
ATGTCGGCAATCATGTCTTCTAATTTGACATAGAACCATTGAGATCGGTC
AGTGAAGCGTAGAATTTGGATGATTCTGTTTCTTGTCCACTTCATCAGAT
CAAGGTTTGGGTTGCAGATCCAGTATAGAGCGATTTGAGAGTCGGTGAAT
TTGATTGACGATTTATGACGATCTCCAAATGCTAGCTTGACTGTTTGGCC
AGTATGACTGTTGAGAAGGGCTGCCAGGAGCTCTCCTCTTGGTTGGGTTG
TTTCCTCTAAGACTTGCGATCTTGCGAAGATGAGTTGGCATGAGTATGTT
TCATCTTTGAGCTTAAAACGGACGTAAATTGCTTAACATGCCAAATATTC
ACTGGCATCGCCAAAGTCAAGGGTTTCGATGTTGAGATTAACGGCCTCTT
CTGGTACAATAGCGCGTTTATATTAGATGGTCTTTATCTCTTTCATCATT
TCGAAGTGTGATACCCACATGTTGCGGAAGTTGTCAGGTAAGGTATCATC
CCATTCAAATTTGTGCTTGACGATTTGATGCATGTCCATCTTCATTGTTG
CAATGAAAGGTGTGACGATGCCTGAGATGTCGTATAATTCTCCAAGTTTG
GATGAGCATTGTCGGCGTGTTAGATTGGTTGGGATGTCAGAGATTGAAGT
TGGTTTTCGACCACTTTTTCGCGAAATTCAGATCCTGAACATCAATTGAT
AGGGTGTCTTCTTTTGGGTACCACTTGAGTCCAGCAACTGATACAGAATG
ACTGTTCTTGGAAAGCTTTTTGATTGGATCTTGGCAAGAGAATGTGAAAC
CTTTATGTGTGAAGCCACCATTGTTTACAACAGTTTCGAGTCGATCTGCA
GTGCTGATGACCTTGGGAAGAGTCTGATCACCTGATAAGCAATCATCCAC
ATAAACGTCCTCTGATACGATTCTGTAGATGTCAGGGTGATCATTTTGGA
ATTGC Run BLAST on NCBI protein sequence of TCONS_00070145-protein >TCONS_00070145-protein ID=TCONS_00070145-protein|Name=TCONS_00070145-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MKWTRNRIIQILRFTDRSQWFYVKLEDMIADIGTRRFSSVDTINKESDWI
NGYSWMKLPSTLFPSLSKGKIQLGAQERQLAYKECNPEAKSFFSSSIIIA
DEVAKRYKLSNYLVDPNARKFSSIVRILVIIRKFIKTHLKISSLRPKHLQ
TKIQEDDLDEARNYLFRKATLEINTFVPTNKVKKISEMKDGILYYTGRIL
PTDNVTILGNATNVMKDLGALHFHVPIIDRHSPLAYAIVNDIHWNHPTVS
HTGVETTWRYILQVA Run BLAST on NCBI transcript from alignment at scaffold_513:300065..302319 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070145 ID=TCONS_00070145|Name=TCONS_00070145|organism=Clytia hemisphaerica|type=transcript|length=2255bp|location=Sequence derived from alignment at scaffold_513:300065..302319 (Clytia hemisphaerica)
GCAATTCCAAAATGATCACCCTGACATCTACAGAATCGTATCAGAGGACG
TTTATGTGGATGATTGCTTATCAGGTGATCAGACTCTTCCCAAGGTCATC
AGCACTGCAGATCGACTCGAAACTGTTGTAAACAATGGTGGCTTCACACA
TAAAGGTTTCACATTCTCTTGCCAAGATCCAATCAAAAAGCTTTCCAAGA
ACAGTCATTCTGTATCAGTTGCTGGACTCAAGTGGTACCCAAAAGAAGAC
ACCCTATCAATTGATGTTCAGGATCTGAATTTCGCGAAAAAGTGGTCGAA
AACCAACTTCAATCTCTGACATCCCAACCAATCTAACACGCCGACAATGC
TCATCCAAACTTGGAGAATTATACGACATCTCAGGCATCGTCACACCTTT
CATTGCAACAATGAAGATGGACATGCATCAAATCGTCAAGCACAAATTTG
AATGGGATGATACCTTACCTGACAACTTCCGCAACATGTGGGTATCACAC
TTCGAAATGATGAAAGAGATAAAGACCATCTAATATAAACGCGCTATTGT
ACCAGAAGAGGCCGTTAATCTCAACATCGAAACCCTTGACTTTGGCGATG
CCAGTGAATATTTGGCATGTTAAGCAATTTACGTCCGTTTTAAGCTCAAA
GATGAAACATACTCATGCCAACTCATCTTCGCAAGATCGCAAGTCTTAGA
GGAAACAACCCAACCAAGAGGAGAGCTCCTGGCAGCCCTTCTCAACAGTC
ATACTGGCCAAACAGTCAAGCTAGCATTTGGAGATCGTCATAAATCGTCA
ATCAAATTCACCGACTCTCAAATCGCTCTATACTGGATCTGCAACCCAAA
CCTTGATCTGATGAAGTGGACAAGAAACAGAATCATCCAAATTCTACGCT
TCACTGACCGATCTCAATGGTTCTATGTCAAATTAGAAGACATGATTGCC
GACATCGGAACTCGCAGATTCTCATCTGTCGACACCATCAATAAAGAATC
AGACTGGATCAATGGATACAGTTGGATGAAGTTACCTTCTACACTGTTTC
CATCCCTATCAAAGGGTAAGATCCAACTCGGTGCTCAAGAACGTCAATTG
GCTTATAAAGAATGCAATCCAGAAGCGAAGTCATTCTTTTCATCTTCAAT
CATCATAGCAGATGAGGTCGCTAAACGATACAAGCTTTCAAATTATCTCG
TTGATCCAAACGCCAGGAAATTTTCTTCTATTGTACGTATCTTGGTTATC
AttagaaaattcatcaaaactcATCTCAAGATCTCATCACTTCGCCCGAA
ACATCTTCAAACAAAGATTCAAGAGGATGACTTAGATGAAGCAAGGAATT
ACCTCTTCAGAAAGGCAACATTGGAAATCAACACCTTTGTACCTACGAAC
AAGGTGAAGAAAATCTCGGAAATGAAAGATGGAATCTTGTACTATACAGG
ACGAATTCTTCCAACAGATAACGTCACGATTCTTGGCAATGCAACAAATG
TCATGAAGGATCTAGGAGCACTTCACTTTCATGTACCAATCATCGATCGA
CATTCACCGCTGGCATATGCCATTGTAAACGACATCCATTGGAATCATCC
GACAGTCAGCCACACAGGAGTTGAAACCACTTGGAGATATATCCTTCAAG
TAGCATAAATCATTGAAGGAAGATACCTCGTGAAACAGATTCGATCCTTA
TGCGCCAAATGTCGATTCTTGATGAAACAACAACTTGATGTATCTATGGG
GCCCACGCCACTAGACAGTCTCAACATCGCTCCAGCCTTCTATTGCTCCC
AAACCGACTTGGCTGGACCATTTTTATCCTACTCAAATCATCACAAACGA
ACAACAGTTAAAATCTGGTTAATCGTTTTCTGTTGCGCAACCACAACTGC
CGTGAAGATCAAGCTGATGGAAGATTACACAACGACATCCTTTGTGCAAG
CATTCACACGTTTGGCATGTGAAGTTGGCTACCCAAAGAAATTACTTGTT
GATGAAGGGAGTCAGCTTCTCAAGGGATGTAAGTCAATGCAACTCAACTT
CCAAGACATCAAGGCCAAGATTGAGGCAAAATCATCTATCGAGTTCAGTA
CCTGCCCAGTTGGTGGACACAACTTCCATGGTCGAGTCGAAAGAAAGATT
AGAGAAATTCGAAAATCATTGGAGAAATCTGTCCACCTTGAAAGACTCTC
CATGATGCAATGGGAAACCCTTGCAGCATCCATCTCCAACTCAATAAACA
ATCTA Coding sequence (CDS) from alignment at scaffold_513:300065..302319 >TCONS_00070145 ID=TCONS_00070145|Name=TCONS_00070145|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_513:300065..302319 (Clytia hemisphaerica)
ATGAAGTGGACAAGAAACAGAATCATCCAAATTCTACGCTTCACTGACCG
ATCTCAATGGTTCTATGTCAAATTAGAAGACATGATTGCCGACATCGGAA
CTCGCAGATTCTCATCTGTCGACACCATCAATAAAGAATCAGACTGGATC
AATGGATACAGTTGGATGAAGTTACCTTCTACACTGTTTCCATCCCTATC
AAAGGGTAAGATCCAACTCGGTGCTCAAGAACGTCAATTGGCTTATAAAG
AATGCAATCCAGAAGCGAAGTCATTCTTTTCATCTTCAATCATCATAGCA
GATGAGGTCGCTAAACGATACAAGCTTTCAAATTATCTCGTTGATCCAAA
CGCCAGGAAATTTTCTTCTATTGTACGTATCTTGGTTATCAttagaaaat
tcatcaaaactcATCTCAAGATCTCATCACTTCGCCCGAAACATCTTCAA
ACAAAGATTCAAGAGGATGACTTAGATGAAGCAAGGAATTACCTCTTCAG
AAAGGCAACATTGGAAATCAACACCTTTGTACCTACGAACAAGGTGAAGA
AAATCTCGGAAATGAAAGATGGAATCTTGTACTATACAGGACGAATTCTT
CCAACAGATAACGTCACGATTCTTGGCAATGCAACAAATGTCATGAAGGA
TCTAGGAGCACTTCACTTTCATGTACCAATCATCGATCGACATTCACCGC
TGGCATATGCCATTGTAAACGACATCCATTGGAATCATCCGACAGTCAGC
CACACAGGAGTTGAAACCACTTGGAGATATATCCTTCAAGTAGCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070145-exon-scaffold_513-1491911889:300065..302319 | TCONS_00070145-exon-scaffold_513-1491911889:300065..302319 | Clytia hemisphaerica | exon |
| TCONS_00070145-exon-scaffold_513-1510915933:300065..302319 | TCONS_00070145-exon-scaffold_513-1510915933:300065..302319 | Clytia hemisphaerica | exon |
| TCONS_00070145-exon-scaffold_513-1575043694:300065..302319 | TCONS_00070145-exon-scaffold_513-1575043694:300065..302319 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_513 | supercontig | scaffold_513:300065..302319 . |
Blast
The following BLAST results are available for this feature:
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