TCONS_00070142 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070142
Unique NameTCONS_00070142
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length582

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070142 ID=TCONS_00070142|Name=TCONS_00070142|organism=Clytia hemisphaerica|type=transcript|length=582bp
TGAAGTTTGTAAGGCTGATTCTAAACAACTAGatgttgaaaaattaattt
gtgTATCAAGTGAAGAAGAACGTTGTAACCCAATAGATGAAAAATTAGCT
GAATTGGTAAAATTGAACTGGGGAAGTAAAAAAACCCttgaaaatatgaa
gaaaatctTTAAGGAATACCCTTGCCCTGAAAATTGTACTTTAGACCCAC
CACAAGTGAACACTgaactttggaaaattttgaatagtACTCAATAGAAA
TCGGATGTTAAGCTAGTTGGTAttcaaaaatcattaaaaaaggcaTTGAA
TGtcaatcttaaaattttagaaGAACTTAAAAGTGACTCATTTTCTGTGC
AATCAGTGGCACAAAAAACTGTAGGCATGGCAGCCATCTTGGGACATGTA
TCCcatgaaatttctctcaaaagaAGAATCTTTATACGTGGAAATATAAA
CCCACAGCATAAAGACCTCTGTACCCAATCATAACCAATCACAACAAAGC
TTGTTGGTGATGATCTACCAAAGCTTGTCAAGGAATTGAGCCTGACAAAC
AAAATTGGTAGCAAATTCTCGAAATCCCagtc
Run BLAST on NCBI

transcript from alignment at scaffold_513:288505..289086

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070142 ID=TCONS_00070142|Name=TCONS_00070142|organism=Clytia hemisphaerica|type=transcript|length=582bp|location=Sequence derived from alignment at scaffold_513:288505..289086 (Clytia hemisphaerica)
gactGGGATTTCGAGAATTTGCTACCAATTTTGTTTGTCAGGCTCAATTC
CTTGACAAGCTTTGGTAGATCATCACCAACAAGCTTTGTTGTGATTGGTT
ATGATTGGGTACAGAGGTCTTTATGCTGTGGGTTTATATTTCCACGTATA
AAGATTCTtcttttgagagaaatttcatgGGATACATGTCCCAAGATGGC
TGCCATGCCTACAGTTTTTTGTGCCACTGATTGCACAGAAAATGAGTCAC
TTTTAAGTTCttctaaaattttaagattgaCATTCAAtgccttttttaat
gatttttgaaTACCAACTAGCTTAACATCCGATTTCTATTGAGTactatt
caaaattttccaaagttcAGTGTTCACTTGTGGTGGGTCTAAAGTACAAT
TTTCAGGGCAAGGGTATTCCTTAAagattttcttcatattttcaaGGGTT
TTTTTACTTCCCCAGTTCAATTTTACCAATTCAGCTAATTTTTCATCTAT
TGGGTTACAACGTTCTTCTTCACTTGATAcacaaattaatttttcaacat
CTAGTTGTTTAGAATCAGCCTTACAAACTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043676XLOC_043676Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070142-exon-scaffold_513-1491911889:288505..289086TCONS_00070142-exon-scaffold_513-1491911889:288505..289086Clytia hemisphaericaexon
TCONS_00070142-exon-scaffold_513-1510915933:288505..289086TCONS_00070142-exon-scaffold_513-1510915933:288505..289086Clytia hemisphaericaexon
TCONS_00070142-exon-scaffold_513-1575043694:288505..289086TCONS_00070142-exon-scaffold_513-1575043694:288505..289086Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:288505..289086 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.285344	0	0.107694	0	0.128267	0.101359	2.56798	2.97652	3.76711	1.29064	3.37273	2.85056	3.60569	4.07301	0.756129	0.521641	0.856826	1.02459	5.6621	3.80892	3.58653	3.7679	1.41773	2.18126	3.98269	3.6456	0.391263	0.278378	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070142 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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