TCONS_00070130 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070130
Unique NameTCONS_00070130
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length417

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070130 ID=TCONS_00070130|Name=TCONS_00070130|organism=Clytia hemisphaerica|type=transcript|length=417bp
GACATGGACAATGGTTTGAAGTTAATGCCAAAAATAACGACTGACCACAT
CCTCCTTAACTCGTACTCCAAAATGCGAGTGCATCTTGCATGCTGTCGAA
ATTTGGTCCGGAAGAAGCCAAAGGAACTGCAGATTTTGTTTGCAAATGGA
TCAATTTTTCGATTGTTTTAATGTCCGAAACACCAAGGAGTACAAGGATA
AAGGAAAACCGTACTTAGCACCATACACCACAGCTGACCCTAAAAAGGAC
GAACGTTTTGGGTTTCTCGACTCTTTCGTGAAATATTTGGACAATTGGAA
AAAAAGTGCAATTGAACGCCCTGGAAAATTTTCCCAAACTAACAGAAACA
ACATGTTTCATGTTTCCTACTTACAATGGTATCAAGATTAGTATTACCTC
ACTAAAAGAAATAATCC
Run BLAST on NCBI

transcript from alignment at scaffold_513:148870..149286

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070130 ID=TCONS_00070130|Name=TCONS_00070130|organism=Clytia hemisphaerica|type=transcript|length=417bp|location=Sequence derived from alignment at scaffold_513:148870..149286 (Clytia hemisphaerica)
GGATTATTTCTTTTAGTGAGGTAATACTAATCTTGATACCATTGTAAGTA
GGAAACATGAAACATGTTGTTTCTGTTAGTTTGGGAAAATTTTCCAGGGC
GTTCAATTGCACTTTTTTTCCAATTGTCCAAATATTTCACGAAAGAGTCG
AGAAACCCAAAACGTTCGTCCTTTTTAGGGTCAGCTGTGGTGTATGGTGC
TAAGTACGGTTTTCCTTTATCCTTGTACTCCTTGGTGTTTCGGACATTAA
AACAATCGAAAAATTGATCCATTTGCAAACAAAATCTGCAGTTCCTTTGG
CTTCTTCCGGACCAAATTTCGACAGCATGCAAGATGCACTCGCATTTTGG
AGTACGAGTTAAGGAGGATGTGGTCAGTCGTTATTTTTGGCATTAACTTC
AAACCATTGTCCATGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043664XLOC_043664Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070130-exon-scaffold_513-1491911889:148870..149286TCONS_00070130-exon-scaffold_513-1491911889:148870..149286Clytia hemisphaericaexon
TCONS_00070130-exon-scaffold_513-1510915933:148870..149286TCONS_00070130-exon-scaffold_513-1510915933:148870..149286Clytia hemisphaericaexon
TCONS_00070130-exon-scaffold_513-1575043694:148870..149286TCONS_00070130-exon-scaffold_513-1575043694:148870..149286Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:148870..149286 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.230018	0.181763	0.21929	0.205296	0.287465	0.890181	0	0	0.453753	0.235613	0.193706	0.103938	0.38413	0.13124	0	0	0.164913	0.241316	0	0	0.732517	0.980631	0.23388	0	0.189315	0.192882
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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