|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070123 ID=TCONS_00070123|Name=TCONS_00070123|organism=Clytia hemisphaerica|type=transcript|length=1091bp
ttttgaagctctacaagatgaactaggtttgattgccaccagaatagttt
caatttgagcCTGGAATGGCtaccactgatgcaagttaccaacTCTCACG
GTATTGCACTGAGTAAAAGGTATATTCTAATACTTACCAATAATCAGGCA
CTTGGCTCTATAGTTTAAAGCTCTTTTGATTTCAGCAGGCATTATGTCTT
CAATTTACGAGTGTTGAAAAGTTTAAGCTACGAGAAAAAACTGGTCactt
tttccagatttttcagatttttgacgACTTTCACTGCTTTGACTACCATT
TTAGCCAAACAAATATTCGAAAAACTTTTGGCCATGTTTCAAAACAACTT
TTCTATGGAAACCGTCGAAAAATAAAGGGCGGCTGCTAGCTGCTGTGATT
TGTTGTTCTTTTATTTGCAtcagcaaaatcaaaacaaagatcgaAAATGA
ACATTGCTAAAGCCACTTTTTCTGCTATTTCGTCTATTTAAAAGATGAGT
ACTAGCCTTCCTTCGTTAATGTCAAGAAGAAGGAAGATTTCTGGATATTC
AGGATTAGATCACGCCAAAGTGATAGCCGACTATGTACCTTCTTCAAAAA
GCCCACATTCTTCATATCAGGACAACTACGCTCTAAGTAGGGAAGAAAAA
CAAAACGCACGAGACGCCGCACCAGCTGGAAAAGAACGTTGCAATGATCC
TAGCCATGTCAGTTTTATTTACGAAAACTCACGGTTCATAAATCAACCAG
TGTGTTTTGCAAATACAAACAGCACACGTCGGATACAAAACCATTGGTGG
CCTGATAAACCTCCAGTTGAGACTAAAAGAGTTTTACCATATAATACAGA
GACGATACAACGAACAGATTATAATGCACAGAATGCAAAACCTATTCAAA
GTCGCGCGACCCGATTCGGGAAAACGCATTATTCAAAAGCTGAATCAATA
TTACCAAATCAAGATGGGAATGAAAATCGAAAACTAAAGCCTACTACAGA
AAGAATTTCTTACGAACATAACTTCGATTCCCGTAAAGAAAGAACAGAGC
GTGGCAAATTACATGGAGCTTTTGTTTGGGAACCTTTGANN Run BLAST on NCBI protein sequence of TCONS_00070123-protein >TCONS_00070123-protein ID=TCONS_00070123-protein|Name=TCONS_00070123-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MSTSLPSLMSRRRKISGYSGLDHAKVIADYVPSSKSPHSSYQDNYALSRE
EKQNARDAAPAGKERCNDPSHVSFIYENSRFINQPVCFANTNSTRRIQNH
WWPDKPPVETKRVLPYNTETIQRTDYNAQNAKPIQSRATRFGKTHYSKAE
SILPNQDGNENRKLKPTTERISYEHNFDSRKERTERGKLHGAFVWEPLX Run BLAST on NCBI transcript from alignment at scaffold_513:593436..594827- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070123 ID=TCONS_00070123|Name=TCONS_00070123|organism=Clytia hemisphaerica|type=transcript|length=1392bp|location=Sequence derived from alignment at scaffold_513:593436..594827- (Clytia hemisphaerica)
TTTTGAAGCTCTACAAGATGAACTAGGTTTGATTGCCACCAGAATAGTTT
CAATTTGAGCCTGGAATGGCTACCACTGATGCAAGTTACCAACTCTCACG
GTATTGCACTGAGTAAAAGGTATATTCTAATACTTACCAATAATCAGGCA
CTTGGCTCTATAGTTTAAAGCTCTTTTGATTTCAGCAGGCATTATGTCTT
CAATTTACGAGTGTTGAAAAGTTTAAGCTACGAGAAAAAACTGGTCACTT
TTTCCAGATTTTTCAGATTTTTGACGACTTTCACTGCTTTGACTACCATT
TTAGCCAAACAAATATTCGAAAAACTTTTGGCCATGTTTCAAAACAACTT
TTCTATGGAAACCGTCGAAAAATAAAGGGCGGCTGCTAGCTGCTGTGATT
TGTTGTTCTTTTATTTGCATCAGCAAAATCAAAACAAAGATCGAAAATGA
ACATTGCTAAAGCCACTTTTTCTGCTATTTCGTCTATTTAAAAGATGAGT
ACTAGCCTTCCTTCGTTAATGTCAAGAAGAAGGAAGATTTCTGGATATTC
AGGGTAAATCCGTTGTTTTAATTTGATGATTGAGTGTAAAGTGCTCTTCA
AAATTTTGCTACTTTGTTGACTGAGTGTCTGTGTCTGTGTGTTGCGGTTT
CACGCGGAAATTTGTTTTTTTTTAGTGTTTATTTTGTCGTCTAATTTTAT
TTTTAAAAGACTGCTACAAGCACAAAGTCTAATCTTCCTAATTTTACCAT
TATGTGTGATCCAAACTAACCAAGTCTCTGTTTGGAAAATAATAACACTA
CTCTACGTACAGTAATTCATATCGTTGGATTCTATATTTTTCTTCGTTTT
ATAGATTAGATCACGCCAAAGTGATAGCCGACTATGTACCTTCTTCAAAA
AGCCCACATTCTTCATATCAGGACAACTACGCTCTAAGTAGGGAAGAAAA
ACAAAACGCACGAGACGCCGCACCAGCTGGAAAAGAACGTTGCAATGATC
CTAGCCATGTCAGTTTTATTTACGAAAACTCACGGTTCATAAATCAACCA
GTGTGTTTTGCAAATACAAACAGCACACGTCGGATACAAAACCATTGGTG
GCCTGATAAACCTCCAGTTGAGACTAAAAGAGTTTTACCATATAATACAG
AGACGATACAACGAACAGATTATAATGCACAGAATGCAAAACCTATTCAA
AGTCGCGCGACCCGATTCGGGAAAACGCATTATTCAAAAGCTGAATCAAT
ATTACCAAATCAAGATGGGAATGAAAATCGAAAACTAAAGCCTACTACAG
AAAGAATTTCTTACGAACATAACTTCGATTCCCGTAAAGAAAGAACAGAG
CGTGGCAAATTACATGGAGCTTTTGTTTGGGAACCTTTGANN Coding sequence (CDS) from alignment at scaffold_513:593436..594827- >TCONS_00070123 ID=TCONS_00070123|Name=TCONS_00070123|organism=Clytia hemisphaerica|type=CDS|length=1194bp|location=Sequence derived from alignment at scaffold_513:593436..594827- (Clytia hemisphaerica)
ATTAGATCACGCCAAAGTGATAGCCGACTATGTACCTTCTTCAAAAAGCC
CACATTCTTCATATCAGGACAACTACGCTCTAAGTAGGGAAGAAAAACAA
AACGCACGAGACGCCGCACCAGCTGGAAAAGAACGTTGCAATGATCCTAG
CCATGTCAGTTTTATTTACGAAAACTCACGGTTCATAAATCAACCAGTGT
GTTTTGCAAATACAAACAGCACACGTCGGATACAAAACCATTGGTGGCCT
GATAAACCTCCAGTTGAGACTAAAAGAGTTTTACCATATAATACAGAGAC
GATACAACGAACAGATTATAATGCACAGAATGCAAAACCTATTCAAAGTC
GCGCGACCCGATTCGGGAAAACGCATTATTCAAAAGCTGAATCAATATTA
CCAAATCAAGATGGGAATGAAAATCGAAAACTAAAGCCTACTACAGAAAG
AATTTCTTACGAACATAACTTCGATTCCCGTAAAGAAAGAACAGAGCGTG
GCAAATTACATGGAGCTTTTGTTTGGGAACCTTTGANNATGAGTACTAGC
CTTCCTTCGTTAATGTCAAGAAGAAGGAAGATTTCTGGATATTCAGGATT
AGATCACGCCAAAGTGATAGCCGACTATGTACCTTCTTCAAAAAGCCCAC
ATTCTTCATATCAGGACAACTACGCTCTAAGTAGGGAAGAAAAACAAAAC
GCACGAGACGCCGCACCAGCTGGAAAAGAACGTTGCAATGATCCTAGCCA
TGTCAGTTTTATTTACGAAAACTCACGGTTCATAAATCAACCAGTGTGTT
TTGCAAATACAAACAGCACACGTCGGATACAAAACCATTGGTGGCCTGAT
AAACCTCCAGTTGAGACTAAAAGAGTTTTACCATATAATACAGAGACGAT
ACAACGAACAGATTATAATGCACAGAATGCAAAACCTATTCAAAGTCGCG
CGACCCGATTCGGGAAAACGCATTATTCAAAAGCTGAATCAATATTACCA
AATCAAGATGGGAATGAAAATCGAAAACTAAAGCCTACTACAGAAAGAAT
TTCTTACGAACATAACTTCGATTCCCGTAAAGAAAGAACAGAGCGTGGCA
AATTACATGGAGCTTTTGTTTGGGAACCTTTGANNATGAGTACTAGCCTT
CCTTCGTTAATGTCAAGAAGAAGGAAGATTTCTGGATATTCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070123-exon-scaffold_513-1575043694:594275..594827 | TCONS_00070123-exon-scaffold_513-1575043694:594275..594827 | Clytia hemisphaerica | exon |
| TCONS_00070123-exon-scaffold_513-1575043694:593436..593973 | TCONS_00070123-exon-scaffold_513-1575043694:593436..593973 | Clytia hemisphaerica | exon |
| TCONS_00070123-exon-scaffold_513-1510915933:594275..594827 | TCONS_00070123-exon-scaffold_513-1510915933:594275..594827 | Clytia hemisphaerica | exon |
| TCONS_00070123-exon-scaffold_513-1510915933:593436..593973 | TCONS_00070123-exon-scaffold_513-1510915933:593436..593973 | Clytia hemisphaerica | exon |
| TCONS_00070123-exon-scaffold_513-1491911889:594275..594827 | TCONS_00070123-exon-scaffold_513-1491911889:594275..594827 | Clytia hemisphaerica | exon |
| TCONS_00070123-exon-scaffold_513-1491911889:593436..593973 | TCONS_00070123-exon-scaffold_513-1491911889:593436..593973 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_513 | supercontig | scaffold_513:593436..594827 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR031365 | GDWWSH |
Blast
The following BLAST results are available for this feature:
|
