TCONS_00070116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070116
Unique NameTCONS_00070116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1386

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070116 ID=TCONS_00070116|Name=TCONS_00070116|organism=Clytia hemisphaerica|type=transcript|length=1386bp
aaaagtagaactaaaaatggaaaatggaaaagaatGTGGAGATTGTTCCT
TCGATTTTTCATCTCAAGACCTTCAATCTTTGCCTGATGAGTTGCTCACA
AAGGAATTggaagaaaagataaaagaacTATGTTTGGACtacaatgattt
tgatgaactCCCAGAAGAGACAAACCGATTTATCAATTTGGTAAAATTCA
GTATTAGTGGTACCATCAAAGGTTTACAGGCTTTGGATTTGTTTAGCAAT
GAACTTGAAGCATTACCAGAGGTGATTTTCCAACTGAAGAAATTGACCAG
ATTGGATTTGGATCGCAACAATTTCAACATGTCTTTAGCTGATGTTCCAA
AAATCACACCAGGTATTAACTATCCAGAACGTGATCCGAAACTAAAGAAC
AACTGGCGTGGACGTACCAGACAAGTACAGATGGACAACACTGAAGTCAT
CGAGTATAAAGATGAAGGGGAAGAAGACACTATTGTAGAAGAAGAATGGA
ATTACCAAGCATTGCGCACCGCCATGCATCGTGGGATGTCGTTCTGGAGA
TCACATACTAATCCTAACGAAAGAAGAAGACCTACCGGATCAAAAGCAAA
CAGCGTCACCATAACCGAAGAAAGCGAGCCTCGTTTCGATGACGACAGTG
AAAACTTGATAATCACCCCTAGCAACGAACAAATAATAATTACTAAACAA
AATGGTAGCTTTTCGACCGCGTTTGACCCCAACGAAGAAGACTGGGACGA
GGAAATTAAAATTAACACTGAATATAAATCGATCTTATTGACTTGTGATG
AACGTCAAATATCTAACAAGGAGACTCCACtgactgattttcaaaaattt
gtgaaCCAGTATCCACCAGCTAAACAATGCTTCAGTTCAACAGGTTTTTA
CGAATCGTTTGTTCATGTGAAGAAGAATCGAGAGAACGTTAAAACGTCGT
TTAATTCGGGTGATACGAATGTGTTTATTGTCGAAGGGCAATTTGATGAT
GCTGACTAGCTCTTAATCATAAGAGTTAAtaaaatttgcgattttttgag
ttttaatctTTCTTAAGTGGCAATTTTTCGTTCTTTAGGATTAAATCAGT
CTATAGTTTCCCCTTTACTCtccaaagggcttatgatgcgtactcctcgg
cgggtgcgacgccgggtgacggttAGTTTTTTTACTATTTCGCCTGTGCA
ACGCGCTCTGTAAGAATGAAGAAGCCTCTTCTTGTAATAAAAACATGGTC
TGAGTTCTAAATCAAAATACATAATGCCTTTGTCTTCTAGTGGTTTATTT
CACTGCAATATTTTggcttttgttttgaatttgccCAATACTTatatttt
taactgttttaagtTAATGTCCTACGTATAAATCCC
Run BLAST on NCBI

transcript from alignment at scaffold_513:411595..414735-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070116 ID=TCONS_00070116|Name=TCONS_00070116|organism=Clytia hemisphaerica|type=transcript|length=3141bp|location=Sequence derived from alignment at scaffold_513:411595..414735- (Clytia hemisphaerica)
AAAAGTAGAACTAAAAATGGAAAATGGAAAAGAATGTGGAGATTGTTCCT
TCGATTTTTCATCTCAAGACCTTCAATCTTTGCCTGATGAGTTGCTCACA
AAGGAATTGGAAGAAAAGATAAAAGAACTATGTTTGGACTACAATGATTT
TGATGAACTCCCAGAAGAGACAAACCGATTTATCAATTTGGTAAAATTCA
GTATTAGTGGTAATAATTTATCAACTCTGCCAGACATACAGCAACTTGTG
TGTTTGAAAGAACTCAATTTAGATGAAAACTCGTTGATCTCTTTGCCAGA
CACATTAGGTGAACTTCAAGCACTGGAGAAACTATCAATGATTGGTAATA
GATTGAAAACATTACCAGAAAGTTTGGGAAAATTGAAGTCCTTAAGAGAA
CTATATATTGATGAAAATGATTTGGCTGTGATCAATTTTAGTTTTCAGAA
CCTTGAACACCTGGAGATATTTGAAGCTACGAATAATAAACTGGAAGTTC
TGTCAGAAGACATTGGATGTGCCAAAAAGCTGAGAATCTTGAATTTAAAT
CATAACCAACTTTTGACCCTCCCTGAAAGTATTTCTGATTTGGAAGCTGT
AGAGATTCTCGATTTGTCTAATAACTTGTTAAAAGAATTACCAGAAAGAT
TTGCTTCGTCTAAACGGCTTGTCAAGTTCATGGCTGAAAATAACACTTTT
AAATATTTCCCTTTCTGGTTTTGTGATTTACCCAAAATTGAAGAAATGTA
TCTGTCAGATAACTCAGTTACTCTTGAACCTTTTGATGACGAATTTTGCT
CTAATGCTCCGAATCTGAGAATCTTAGAAGCTGGTGCTAATTATATGAGC
TCTATATCAGAAAAATTTGGATTATTATCGAAATTGGAGCAAGTACATTT
CGGGAGCACTATACCGGAATTGGAGAGAAGCCATTTTCAAAATGGGAATT
GGATGGTAAAACTACCAGATTCTTTTTGTGAACTGAAACATTTAAATAAA
GCAAATATCAATGAAAATCAGCTGAATTGTTTACCAGAGCGTTTTGGTGA
ATTAGAATCATTAACTTGGTTAGATCTTGGTCAAAATATGATACGCCATC
TACCGAGTACATTTTGTGAATTGAGAAATCTGGAGTTTTTACAACTGTCG
AAAAACCAATTGGAGGAATTGCCCGAGGAGATTGGAAATTTTCAGAAATT
AATCGAACTGAGGCTTGATAATAATGTGTTGAAAGCTGTTCCTGATTCAT
TAGGTACCATCAAAGGTTTACAGGCTTTGGATTTGTTTAGCAATGAACTT
GAAGCATTACCAGAGGTGATTTTCCAACTGAAGAAATTGACCAGATTGGA
TTTGGATCGCAACAATTTCAACATGTCTTTAGCTGATGTTCCAAAAATCA
CACCAGGTAATCTATCGACGGTTCTCTTTTGGTTCAGGCTTCTTAGGGAA
ATAATTTTCGCGGAACTAATTCTGTCGGGAACTTACCCTTTGCGTAGAAA
GATGAAATAGTTTGGGCAAGAAGTTGGCGTTCACCGCGAAGTTCTAAAAA
AAATAAAATATGAACCAATACAATATGAGCTTGGTTATTGGACTTTTGTC
CCCACCGATCTCTTTCCACGGAGCTTTCTTTTTACTTGTAATAAAGTTCT
GTTTTGAAAGATGAAAAAATGCCACTTTCTCTGTTATTGCTTATAGCTAT
GCTATAATTCTGGATGTTTTAGGTATTAACTATCCAGAACGTGATCCGAA
ACTAAAGAACAACTGGCGTGGACGTACCAGACAAGTACAGATGGACAACA
CTGAAGTCATCGAGTATAAAGATGAAGGGGAAGAAGACACTATTGTAGAA
GAAGAATGGAATTACCAAGCATTGCGCACCGCCATGCATCGTGGGATGTC
GTTCTGGAGATCACATACTAATCGTAAGGAGACAATATATTTTTTCTTGA
TTCGTCTTTCTTATAACTGGAGCATTACTGATTCAGTGTATAGACCCTTT
GTCGAGTGTTTTGTAGAAGTACTCCTTGAGTGTTTATTTGATAGCATATT
CTCTCCGGCCCTGTTTACTCAGCACCATATCAGGTACAATATGGTGATAG
GGTGGGTTATGGTATTCATGATATGCACCACTGCAATGTCTTCTGACATT
ACGTCACGGAACCAATTGCTCATTGGTTGGAAGTGACGTAAAAGCAGTCA
ATACGTCATTTTCAACCAATCAGCTATTGGGTGGAACGGAAGACATTGCA
ATGGTGCATATCATGAATTATAAGTGTCTGCTATGACACTATGATTACCT
ACGTACATTATTTTCCAGCTAACGAAAGAAGAAGACCTACCGGATCAAAA
GCAAACAGCGTCACCATAACCGAAGAAAGCGAGCCTCGTTTCGATGACGA
CAGTGAAAACTTGATAATCACCCCTAGCAACGAACAAATAATAATTACTA
AACAAAATGGTAGCTTTTCGACCGCGTTTGACCCCAACGAAGAAGACTGG
GACGAGGAAATTAAAATTAACACTGAATATAAATCGATCTTATTGACTTG
TGATGAACGTCAAATATCTAACAAGGAGACTCCACTGACTGATTTTCAAA
AATTTGTGAACCAGTATCCACCAGCTAAACAATGCTTCAGTTCAACAGGT
TTTTACGAATCGTTTGTTCATGTGAAGAAGAATCGAGAGAACGTTAAAAC
GTCGTTTAATTCGGGTGATACGAATGTGTTTATTGTCGAAGGGCAATTTG
ATGATGCTGACTAGCTCTTAATCATAAGAGTTAATAAAATTTGCGATTTT
TTGAGTTTTAATCTTTCTTAAGTGGCAATTTTTCGTTCTTTAGGATTAAA
TCAGTCTATAGTTTCCCCTTTACTCTCCAAAGGGCTTATGATGCGTACTC
CTCGGCGGGTGCGACGCCGGGTGACGGTTAGTTTTTTTACTATTTCGCCT
GTGCAACGCGCTCTGTAAGAATGAAGAAGCCTCTTCTTGTAATAAAAACA
TGGTCTGAGTTCTAAATCAAAATACATAATGCCTTTGTCTTCTAGTGGTT
TATTTCACTGCAATATTTTGGCTTTTGTTTTGAATTTGCCCAATACTTAT
ATTTTTAACTGTTTTAAGTTAATGTCCTACGTATAAATCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043653XLOC_043653Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070116-exon-scaffold_513-1575043694:414527..414735TCONS_00070116-exon-scaffold_513-1575043694:414527..414735Clytia hemisphaericaexon
TCONS_00070116-exon-scaffold_513-1575043694:413330..413482TCONS_00070116-exon-scaffold_513-1575043694:413330..413482Clytia hemisphaericaexon
TCONS_00070116-exon-scaffold_513-1575043694:412813..413013TCONS_00070116-exon-scaffold_513-1575043694:412813..413013Clytia hemisphaericaexon
TCONS_00070116-exon-scaffold_513-1575043694:411595..412417TCONS_00070116-exon-scaffold_513-1575043694:411595..412417Clytia hemisphaericaexon
TCONS_00070116-exon-scaffold_513-1510915933:414527..414735TCONS_00070116-exon-scaffold_513-1510915933:414527..414735Clytia hemisphaericaexon
TCONS_00070116-exon-scaffold_513-1510915933:413330..413482TCONS_00070116-exon-scaffold_513-1510915933:413330..413482Clytia hemisphaericaexon
TCONS_00070116-exon-scaffold_513-1510915933:412813..413013TCONS_00070116-exon-scaffold_513-1510915933:412813..413013Clytia hemisphaericaexon
TCONS_00070116-exon-scaffold_513-1510915933:411595..412417TCONS_00070116-exon-scaffold_513-1510915933:411595..412417Clytia hemisphaericaexon
TCONS_00070116-exon-scaffold_513-1491911889:414527..414735TCONS_00070116-exon-scaffold_513-1491911889:414527..414735Clytia hemisphaericaexon
TCONS_00070116-exon-scaffold_513-1491911889:413330..413482TCONS_00070116-exon-scaffold_513-1491911889:413330..413482Clytia hemisphaericaexon
TCONS_00070116-exon-scaffold_513-1491911889:412813..413013TCONS_00070116-exon-scaffold_513-1491911889:412813..413013Clytia hemisphaericaexon
TCONS_00070116-exon-scaffold_513-1491911889:411595..412417TCONS_00070116-exon-scaffold_513-1491911889:411595..412417Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:411595..414735 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00318657	0.431438	0.741425	0	6.36617e-10	0.545671	1.30933	0.0438253	1.00312	2.52129	2.72463	0.545313	1.16244	2.1125	0.243044	0.00720176	0.455678	0.7921	0.764594	0.832041	0.530709	0.346038	0	0.562542	2.38271	0	0.0788414	0.070118	0.498056	0.161158
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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