TCONS_00070109 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00070109
Unique Name	TCONS_00070109
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2786

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_513:351586..362789-
coding sequence from alignment at scaffold_513:351586..362789-

transcript sequence

>TCONS_00070109 ID=TCONS_00070109|Name=TCONS_00070109|organism=Clytia hemisphaerica|type=transcript|length=2786bp
CattttgaaaacatcaaaatcaaaataaacagaGAAATCTCGAAGCGCGA
GTAGGAAAGTTCAAAGTGCAATTTAATTCTGCTTCCTGCTCTGCCATCTA
CCTGTGTTATTTGCCTTTCCTTGAAATGGCAGCGACAGCTTTAAAGTCTC
AAATACGAAAACAAAACAGTTTACAACGGGCTTCATCAAGTAAAAGTGCT
CCCAAAGGAGGTGATATTGAACGGATTGCGAGGTCTGGTACTGATGTCAC
ATATACTGTCGATCTCTCATCAATCAATATAAAAGATGTTCCCGACCTTG
GGAAATATAAACACTGTAAATCTCTTGATTTGTCTTGTAATCAAATCAAG
TCTATTTATAAAGATACATTTCAATGTTGTTCTTACTtgaaagaaatcaa
actttattCTAACCATTTGTCTAAAGTGGAGGGTTTTAGAGAATTGCAAC
ATTTGGAGAATTTACAGTTACAATacaacaatatttcaaaaataaacaat
tcatTATCTGGATGTAGAAGTTTAAAATTCTTACGATTGGACTCTAACAA
AATCTCGGTTTTAAAGGGTAAGGAATTTTGTTCATTGCATCAGTTAACGT
ATTTGGATATCAGTGCAAACCAACTTGAAGATATCAGTTTTGTGACTGTG
CTACCATTACTCCAAGAGCTTCACTGCACACATAACAAGCTGACAGAAAT
ACCTGATATAATGTCACTGAAAAAACTGCAAGAAATTGATCTCAGTCATA
ATACAATATCAAACGTTACTGGTCTCAAAGGATTAGCTAATTTAAATATA
TTATgcgtcaaaaataatttcatatcATCAATGACATCtgtaaaaacatt
aaaaacattaaCTGAGCTAAATGTTTcgaacaacaaaatcaaatgtttGT
CACAATTCAAAACAGTGATCCCAAGCATTGAAATACTCAACATTTCTTGC
AATCATATTGAAAACATTGATGAAATTCTACAATTGAAGGATTTTCAGCA
TTTGAAAGAGGTTGAATTTTTGGACAACCCTGTTTTGGAGGAACCAGAAA
CCGACGAACAATTGAAAGCTGCCTTTGAAAGCCTTGATTTGGTTTATCTT
AATGGGAGATCATTAAAGAAGCAACAAGTAAAACGCCCAACAAGTGCGAT
GCGTCCGATGTCAGCTAACCAACTTGTATCTGAGAGAGTTATTTCAAATC
AACTACAATATGATGAGATGTGCCTATCTGATTTTGAAGACCGGATTAAT
ACGCAGTTCATAGCACTACAAGGATTACTCAGTGAGCTTCCAAAGCAATC
ACAGTCACCAGaaaaaaagaaatcacttGAGACTAAAACAACGAGTATGT
CGTCTATTAGAAGTTTACAATCATCAAATTATGATCGTCCATCTTCAAGG
TGCAGTAGCCGTCAGCGTTTAACTGATGCTCTATCGTTCGCTGAAAAGAC
CTTCAAAGATGGCCCCACTAATGCTGAATAAGTGATGGCACATTGAAATT
TCTGGTATAAAGAAAGGTTTGAAATATTGCCTGCTCTGAAAGACATTGTG
ggaaattttaaatcaatttttgtcatgaaatttgattttcatgaAAAACT
GTATACCCCCTTTAGAGTaagtccaaccttttgtgatcTACCTGAATATA
TCTCACCTCTCAAAAGTCTAAGccaaattatttttggaattCCACATAAT
CTCAAATCCCTGATTATTTCACaatatatttttaacaatttctctttatc
ttgaaaagaaatattgttCATTAAAGTTcgaaaaaagagagaaatttgtt
tttttttatgttataattttaaacttcttgtaaatatttcattgatttta
tttgtacattttttgtaaatttttctgatttgatgaaatttcctaACAAG
AGTTTGCCAATTGAAGCGCTTATGCGACAGttaacttttttcatttcatt
ttcattataaTTACGAAATGCATTTTTTATTTCACAGCATGTAATTTTTC
CGTCATTTCCATAAATTGCAAACATATTTACTAATTTATCTTTATCTTTA
GACTCTAATAATAACTAAACAGATATTTCCTACAGAAAGATAAACAATTC
ATAATAATGGCAGAACCAACCAAAAATCATGACGGCAACTTAGTTTGGGT
GGATCTAGAAATGACCGGTCTGGACATTAATACTTGTCATATCATAGAAA
TGGCTTGTGTAATCACTGATGGAGATCTAAATATTGTGGCAGAAGGGGAG
GACCTAATTATCCACCAATCAGACGAAATAATGGACAATATGGGAGAGTG
GTGCACCAAACAACACGGAGAATCAGGGTTAACACAATCTGTCAAAGACT
CACATATCTCTTTACAAGAATGTGAACGCAGGATGATTGAGTTTATCAAG
AAACATACGGTCAAAGGGAAGAACTGTCTGGCAGGAAATTCAGTCCACGC
TGACAAAGAATTCCTAAAGAAATACATGCCAAATTTTATGGAACATTTGC
ATTATCGTATTATAGATGTTAGTACTGTCAAAGAACTTACTAGACGTTGG
TATCCAAAGGAATTTGGGTCAGCCCCGAGAAAGACTTTTTCTCATAGAGC
CCTACAAGATATTAAAGAGAGCATCGAGGAGCTACGATACTATAGAAAAT
CAGtttttaagtgatttttttgtaacttttttatttttatataaagaacT
TGGACCATGCGTTGTTTCATCTGTTTATTCTTGGGTCTGTGTAAAAATGT
CTATCATTTTGTTGAACATAATAGAGTAGGGTGGGG

Run BLAST on NCBI

protein sequence of TCONS_00070109-protein

>TCONS_00070109-protein ID=TCONS_00070109-protein|Name=TCONS_00070109-protein|organism=Clytia hemisphaerica|type=polypeptide|length=451bp
MAATALKSQIRKQNSLQRASSSKSAPKGGDIERIARSGTDVTYTVDLSSI
NIKDVPDLGKYKHCKSLDLSCNQIKSIYKDTFQCCSYLKEIKLYSNHLSK
VEGFRELQHLENLQLQYNNISKINNSLSGCRSLKFLRLDSNKISVLKGKE
FCSLHQLTYLDISANQLEDISFVTVLPLLQELHCTHNKLTEIPDIMSLKK
LQEIDLSHNTISNVTGLKGLANLNILCVKNNFISSMTSVKTLKTLTELNV
SNNKIKCLSQFKTVIPSIEILNISCNHIENIDEILQLKDFQHLKEVEFLD
NPVLEEPETDEQLKAAFESLDLVYLNGRSLKKQQVKRPTSAMRPMSANQL
VSERVISNQLQYDEMCLSDFEDRINTQFIALQGLLSELPKQSQSPEKKKS
LETKTTSMSSIRSLQSSNYDRPSSRCSSRQRLTDALSFAEKTFKDGPTNA
E

Run BLAST on NCBI

transcript from alignment at scaffold_513:351586..362789-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00070109 ID=TCONS_00070109|Name=TCONS_00070109|organism=Clytia hemisphaerica|type=transcript|length=11204bp|location=Sequence derived from alignment at scaffold_513:351586..362789- (Clytia hemisphaerica)
CATTTTGAAAACATCAAAATCAAAATAAACAGAGAAATCTCGAAGCGCGA
GTAGGAAAGTTCAAAGTGCAATTTAATTCTGCTTCCTGCTCTGCCATCTA
CCTGTGTTATTTGCCTTTCCTTGAAATGGCAGCGACAGCTTTAAAGTCTC
AAATACGAAAACAAAACAGGTAATACTAAATTTAGTTTGTAGGTACTAAA
AATATTTTTTTTAATCATTTCCCCCCAACCAACCAGTCGACCCCTTTCTT
TATGTCCTTGCTTGACCTTTCATGAACCCAGACGCCCGCGCTCGATAGGA
TCGATCATCAGAACGGCTCGATGATGGATCGATATGTGATTGATGGATTA
CTTAACGATCCGGATAGGAGATCGATGGAAGATTCAGCCATTAAAAAGTC
TTGAGTATCGATCCTTCGTTGATCCATTATCGAGCTAGTATTTCAATCAA
TGGAGTATACCAATTCGTCATTGATCGTTAATCGATTCGTCATCGATTGT
TAATCGATTCGTCATCGATCGTTAATCGATTCATCATCAATCATTAATCG
ATTTGTTATCGATCGTAGATCGAGTATGAGTCGATAGGGTCGATAAGATC
GATAAAAGATCAATGATGATAGATCGATAAATAATTGATAACTAATCATA
AGCTTAAAAAAATCTTGAGTATCGATCCTCTATCGATCTCCTATCCGGAT
CGTTAAGTAATCCATCAATCACATATCGATCCGTCATCGAGCCGTTCCGT
TGATCGATCCTATCGAGCGCAGACGTCTGGATGAACCTTGTCTGCGCAGC
AGTACAACATCATGGCGTCCTTTTAGTCTATCTTTTTTATATCATAGCTT
GGCTAAAAGAAAAAACTTTTACCTGATCAACACAACCAAACTTTCTGTCA
GTGCAGCTGGAACCTTGATATTCCAGGATTAGAAAAAGCTATACCTGTTA
TCTTTTTTCTTTAAAAAGAATCAACAAGCCATCTAACCCAGGGTCCACTT
AAAGCTTTTTGATAGACTGGATGGCCCGATTAAGTGGCCCAGTAGTATAT
GGTAATATGCTTTTGCTTAGGCGGACTGTTTTACAGTCCACCAGATTTTT
GTTGTTTTTGGAAGGTAAAAACAGTATGAAGCAATGTTTTTATTTGAGAA
TAAGGGATTGCAAATCTGTTATTGATGTTTATTTCTCATTTTTGATTACA
TCTTTCAACTCCAAGTAGTTTTTTTGTTATTTGGATTTTAAACATTCTTT
TTTTTCAAAATGGCGACCTCGCCAAACGCTCCTTATCTACTTCACTGGAC
TCAGCGTCAAAAATTATCAAAAAGCAAAGTTCAGCCAGATTTAGACTCTA
GTCTACAAGCCATCAACATCGATTAAATGACACACATTTCCTCAGAAACT
TCCAAAATTATCTGCCATTATGACTTTCTTGAAGCCATTCCGAAATTAAA
GGGGAACTCAACAAATTTTGGATTTTTTTGTTTCTATCCTGAAATGGTTT
GTTTCAACAAAAAATTTCAAAATTTCAAGGTTGCAACTCTCCTTTCACTC
AAAAAATTTGTTTAATGAGCTTTTAAAAAGAGGCTCCCCTCTACTAAAAT
GAAATTGTTTATCAAATAAAAAAGACGCACTTTCAGCTGCTTTATGACGT
AGCCGTATTCAGAAAGAGGAAGATGCTTATCTTCTCAGGCTAAAAATCAG
TGAAGACATGCCCTTAAGTAGAGGGTTTGTGACTAAATTTTTGTGTTTCT
AGTTGGATTTTTTATTGTTATTCAGCTAAATCACCCACAATTTACCAGGA
ATACTTTGCTATGTATTTATTTCTTATTTAAAACAGAACTGTAGTCATAA
CTGAATTTGTTCTGTTTTCTGAATGCAGTGACGTCATAATCCAAAGAGAA
GTCGATCTTTTTTTTAAAGAAAGGGGGTGATTTTTTTAACATATNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGATCGGACTTATATACTTTC
TTTCTCATTTTTATACTTAATATTACCAAAAATCAGTAAAAAAATAAAAA
TGTCAAATTTGTTGAGTTCCCCTTTAACCAATCATGTTGTGTATCGGAAT
TCCTATGGGAGTTCTTTTCCGAGATTTGTAAAATAGCTAAGTCGGCAAAA
TACTTTTTCCAGGGGTTTGAGGACAGAACAGAACTGCTATCATTTGCTTT
TTAAACCATGTATTTAAATTTGCGCTCAAAGATACTTCCAGACGATCTCA
ATCGAACGGAATCGACGATCGAACCAGTCCAACCAAATCGAACGCAATCG
ACCGATTGAAATTCGATTGTCAAACGCAGTCGAATCTCAATCGAATACTA
CCGCAATTTACAGATTCGATTGATATTCGATTGCGTTGGATTGATGTTCG
ATTGTGTTCGATTGCGTTCAATCGTCGATACATTGACCCCCGGATTGTTC
ATTGCATAATTTCTACGGGAAATCAAAAGTAATTTCATTCAGCTTGTGAT
GTTTGAGAGCTTGGATGTTGGGAAGCTGCAAGAATAAAGCCAGGCGATCT
CAATCGAACGGAATCGACGATCAAACCAGTCGAACAACAATCGAACCAGT
CGAACAACAATTGAACCAATAGAATATTACCCAGAATTTTGACGTTCGAT
TGAGATTCAATTGGTCAATTGCGTTCGATTTGGTTCGATTGGTTTGATCG
TCGATTCCGTTCGATTGAGATCGCCTGGTAAATAAATAAGTTAATAATAC
AGAATGACATTGTTTATCATTTGGAATCCCCCGTATTTGGACCATTCTAT
TGTGGGCACAAAATAGGGCAGAAACTAAGTAGCACCCTCAGTGCAAGATT
GCCACCTCATCTGTATTTGTCCGCGCGAGAACGCGAGCTAATCATTTTTT
TTATGCGCTCAAGGGGAAAAAGAGAGTGATCGATATTCTTTGAAGGAAAA
ACGCCAGAAACAAACCCAAAGACCAAAAGATGTATTTTGTTGTTGAGAAT
GGATCCTGTGAAGATGAAAAAATTTCTGCTATCCGTTTTTTTCGAAACGC
TGAAAAACCCTAATTTTGATCTTCCGTAAGGTAAAGAGGTTGCGAGATTT
GGGTTAGCGAGGCAAAAATCGCTAAGAAGCTGGTAAAATCGTAATCCTCA
AAAATAGTAGACCTTTTTTCAAAGAGGCCACCCTGTTGAATATATGTAGT
CCAGCAGAAAAACAATGATAAAACCATGCATAATTATTACAATATGCATG
ATACAGTAATTATGCATGGCTCTATCATTTTTTTTATGGCTGGACTACAA
AACTATTCAACAGGACGCCCTCTTTGAAAAAAGGTCTATTGAAGTTCCAG
CTTCACTGTCTGTCGTGTGTTTACATTTTCCTTCCCCAAAATTTTTGTTT
TGTTTAAACTAAGTTTTATAAACTCAATATAGGCGTAGTGGTATAGTGGT
TATTATCTTTGTTGATTCCCGCCTAGAGACATTACTTTCCCTCAGCCAAT
AAAAACATGATAAATTATCTTGTCTCTAGAGGTAACTTCCGTCAACTGCT
CTAAACTAAACTAAACTTGGGACGATTGGTCAAAACTGTTGCTGTATTTT
CGCTTACTGTTAAATTATATTGATAACAAATTAGTTTTTATAACTCCACC
AAGTTTATCTTAATCATACTTTCTGTCATACTATGTCACAATAACTTTTA
CTGATAGCACGCCCTTTTTAACTTTTTTGTTTTCATTCAAAATGACCGGA
CGCCAATTGGAGAATTAGAGAACACCCGTCGCCTACCGCCTATTGCCCAA
TGGGATAAACAAATACCCAAGTTAGAGCAGTTGACAGTACTGTGGAGTAC
CGTCAACTGCTCTAACTTAGGACAATTAGTCAAAATATTGGACTGGTTGA
TATCTGGCCTGTATTTTCACTTACTTTTAAATCTCTTTGACAAAAAATAT
TTGTTTTGATTACTCCACCAAGTTTATCAATCATACTTCTTTGTTCCTCT
TAGAGTGCACAGACACTCTTGTGTGTTCCACTATAGATTTTTTTCATATT
TCTATTTAAAAGCGTACTCTGTGCGAAAGAGAAATCTTGCATTTTTTAAT
ACGCTGTTCATTAAATCAAATCAAATGACTTTAGAGGTTCGGTGAAATGG
TGGCTGAATTGCAGTCCTATGTTTTGTCAGATAGTCCCAAGTTAGAGCAG
TTGACGGTAATTAGTTATTTAAAAGACTGACGCGTTCGCCAAAACATCTA
TTGACTTATTAACCTGATGTCCAAAATCATCCAGCAAGTATCTTTTCGAA
GTATCTTCCCTAGAAAATTTGATCTGTTTCCATAATTTTCAGAATTCAAA
TTTTGAATTGTTCTCCCAAGCTTATAAGAAAGTTTCCCTCTCCTGGAAAT
TTCCATCTGTTTCCCTTGCTTTTGTGGTTGATATCTGTTTTCCCCCAGAA
AGTTCAATCTTTTTCCAATGCAAAATCATCTTTTTAGAAACAGATGTATA
TTTCCCAATTTATTTTGTCATCTCCTTGAAATATTGGTCTGTTTCTCTCT
ATGGCGTCATCAGCTGGAGCGGGGAAACAGATAGTTTTAAGGAATTAAGG
TCTTTCCTAGAAAATTGGATCTGTTGAACTTGAAATCCGTCGTACATCCC
ACCTTACCCACCGTACATCACCGTACAATGTACAGCGGTGTCCAGGGTTG
TTCAAAATATTCTACAACAAATAAGAATCTTGTTGTGCGCCGGAAAGTCA
AAAACTAAATTTTCCTGATATGGGCGCTATTCTATTCATAAACACACTTT
CAAGCAACTTTGTTGGCATTTCTAGTCCTTTTAGATGAACATGGTCCTTA
CATTTTGAGATAAATTATGTTTAACCCATCCCTTTTGAGCTTCAGCATCT
CAGCAAAAAACAATCACAATCTGATCTCAGAGGTTAATTGACTTAGGATT
TGCTGCAGCGTTATTACATGCAGATTCAGGAGTGTGTTAGCATGACAACT
TTTTATTCAATAGACAGTCGCACAACTATTAGCTATGCAATAAAGACTGT
GGTGTTTGCCTAAAGGAGTATGCTGACTTATGCTGTGTTATTCTGTCATA
GCAACTTTCTAATCTTTTAAATGTTTATAAACAGTTAGTAGAAGTGCTTC
AATCTATACCAAGTAAAGTCGTTGAAAAATTCATTTGTAATGCTCTAGTT
TGTCATTTGGAATCTTTTCATCAGTTTTCAATGGGGTTTTCACAAACAGA
GCTCTTGTGAAGACCTTCTTCTTCATATGACAGAGAAATGGCTGAAATCT
ATTGATTCAGGAAAAGTTGTTGTTGTTTTATTTATTGACTTTCAAAAAGC
ATAGCTCATCCTATTTTGCTTAATAAACTTGCTGGGTGTGGAATATCTGG
ATCATTTCTTTGAGTACATAAAATCCTATTTAGATGATCGCTCTCAATAT
TTCATTTACTGGTCAAAAAGACATCGACAAATTGGGTATAGGTATTCAAT
CTTTCCCTGTTTTCATAAAAAAAATGATTTGGAATTTAATTGAAATTAAT
TGACAAATCTTTTACAATATTTTTTAATCTAAAGTAGTCAAAAAAGTTAT
ATTTTCTGTTATAGTTTACAACGGGCTTCATCAAGTAAAAGTGCTCCCAA
AGGAGGTGATATTGAACGGATTGCGAGGTCTGGTACTGATGTCACATATA
CTGTCGATCTCTCATCAATCAATATAAAAGATGTTCCCGACCTTGGGAAA
TATAAACACTGTAAATCTCTTGATTTGTCTTGTAATCAAATCAAGTCTAT
TTATAAAGATACATTTCAATGTTGTTCTTACTTGAAAGAAATCAAACTTT
ATTCTAACCATTTGTCTAAAGTGGAGGGTTTTAGAGAATTGCAACATTTG
GAGAATTTACAGTTACAATACAACAATATTTCAAAAATAAACAATTCATT
ATCTGGATGTAGAAGTTTAAAATTCTTACGATTGGACTCTAACAAAATCT
CGGTTTTAAAGGGTAAGGAATTTTGTTCATTGCATCAGTTAACGTATTTG
GATATCAGTGCAAACCAACTTGAAGATATCAGTTTTGTGACTGTGCTACC
ATTACTCCAAGAGCTTCACTGCACACATAACAAGCTGACAGAAATACCTG
ATATAATGTCACTGAAAAAACTGCAAGAAATTGATCTCAGTCATAATACA
ATATCAAACGTTACTGGTCTCAAAGGATTAGCTAATTTAAATATATTATG
CGTCAAAAATAATTTCATATCATCAATGACATCTGTAAAAACATTAAAAA
CATTAACTGAGCTAAATGTTTCGAACAACAAAATCAAATGTTTGTCACAA
TTCAAAACAGTGATCCCAAGCATTGAAATACTCAACATTTCTTGCAATCA
TATTGAAAACATTGATGAAATTCTACAATTGAAGGATTTTCAGCATTTGA
AAGAGGTTGAATTTTTGGACAACCCTGTTTTGGAGGAACCAGAAACCGAC
GAACAATTGAAAGCTGCCTTTGAAAGCCTTGATTTGGTTTATCTTAATGG
GAGATCATTAAAGAAGCAACAAGTAAAACGCCCAACAAGTGCGATGCGTC
CGATGTCAGCTAACCAACTTGTATCTGAGAGAGTTATTTCAAATCAACTA
CAATATGATGAGATGTGCCTATCTGATTTTGAAGACCGGATTAATACGCA
GTTCATAGCACTACAAGGATTACTCAGTGAGCTTCCAAAGCAATCACAGT
CACCAGGTACAGTGGTCAGAGTTCTTTCCGTTGAAGACGGATTTCCACCT
CAGCTTAAAACAAGCCCTGTTCCATCTCAAAATTTAAGTATGATTCAAAA
CTAATTCCTTTTTATGAAGTCTATTTTCTTCGTGGTCGATTGTTTTTCTA
CGTTAATTATCGGGATGCCGACATTTCGGGGTAAATTTTTATCTTCTTAG
ATCCCCTGTCACCATGTTTGCTAGTTAAAGATGATGTTTGGATGATTTTT
CTTAAATAAAAGATACCCCCTTTAGGTCTTGAATATAACAATATTGCACA
AAAATCTAGTTAAACTTTGTTTACTTAAAAGAATGACTCAATACTACAGG
CTTCATTTAATTTAACTCTAGAAAAAAAGAAATCACTTGAGACTAAAACA
ACGAGTATGTCGTCTATTAGAAGTTTACAATCATCAAATTATGATCGTCC
ATCTTCAAGGTGCAGTAGGTAGGTGTATTTCAATGAAGATCTTGCTTATA
TTCCTTAGCAAAAATTTGATACCATTCACCTTTGAGAAACCATGTACAGG
GTGTCCTGAAAAAGGTCGTGTGTTAGAGCATGACTACAAATAGAAATATT
TTTGTGTTGTTTGTTTTGACACAGGACTTTTTTTCGTGACTTTATAGTTT
TACTTTCTATTTGAAATTTTGCTAAATACCGGGTACGCCACAAAATCGTT
TCTTACTCTCGGGTACCTAATAGCCGCGGGGTTTGGAATAAGCGGGGGGG
GGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCCAAGGGGGGGGGGGGGGGGAAAAGGGGG
GGGGGGGGGGTTGGAATAAAAATGTCCTGGGTGGAAAATTTTTGAAAAGG
AGGCTGATACAGCAGAATTAGGACAAAAGAAGGAACTTTCAAAAATATTT
TTCCAAAAAATCAAAAAATATTTCAAAAGAACCAATTCTTTTCCATTGGA
AGAAGAAAGATAAACTTTAATTTTGATGGGTCATTTTATTAAATTGGGTT
GATTAGTCCAAAAGTTACGCTCAATAATTGTATAAAAAAGTTACTTTCAG
AAAGTGCTCAAAAATGTTGAAAATCGACATATCAAATTTTTATTTAAGAG
CATTTTTTAGTAATTAAAGTGTTCCTGTTTCATATCAGACACATATTTCA
TATCAGGACAGTGTCTTGCTATTGTTATAGTATGCTTATATAAACAAAAA
AATGTTTTTCTTTTCCTCTTTCTGACCAATCTTGCTCCACATCCGTGTAA
ATTCAATGTGAAAAAGCTTGTAAATTAAAATTGATGAGTAAGCAAACGTT
ATCACTCTTATTTAAAAACAAAACCTTTAAACACATAAATTTTGTAACTG
AAGGCTCGAAAAGGTTTGAAATATTCATCAAAATCCTTTTGATTTACTTT
TACTAAAATTTTCCTTAGATTTTTGGTTCTAGACTGGATAAAGTCTATGT
ATAGCTGGATTTACCTTGAAACTAATATTTAATGTATTTTTATGAATTTT
ACCAGATTTTTTGGAATTTTTCAACGAATGCTCCTCCTTTTATTGGAATT
CAACCTTCTTTTATATAACAAATGGTCTTTAATTAAGACAGCTAAATATT
GGTTTTAATGACTGGAGCGAAATTACTGATGTATCATGCAAGTATGCTTC
TGTTTAATTTTATAGGTGGATTTTTAACGTTTTAGAGTATTTTTTCTGAA
AGTAACTTTTTTATTAAGTTAAGCATAACTTTTGAACTTGAACCAAATTT
TATAAATCACCCATCAAAATTTTATCTTTCTTCTTTCCAATGAAAAAGGA
TTTTTTTTTTTTAATTTTAGACCTCGAGAAAGTTCACTTTAAAGAGAGAA
ACTTTTTCGTGGCGCACCCGGTATCAATTATTATTATACCGAGTTACATC
CTGCTACACTTGCATTTTGACGTTAACCGATACTTCGATTATGAGCTATC
AGAGAGAGTGAGTAGTAGAGAGTGAATTCACTCACCATCTGAATAAGGTT
ATCACTGTGTCGCACTAACATTCTGCCGATTAGAAGTGTGAAGGTTTCAA
TCACAGAGTTGCACCGCAATGGACTCGTGTTCGAATCCCAAGCACTTCCA
AGCAGGGTGTTAGGGAAACATGATGATAGACTGTCAACTTTCACTCGTGT
ATCAATTTATTACTTGGTGTTTTTGTCTTGTTTATTTTAGCCGTCAGCGT
TTAACTGATGCTCTATCGTTCGCTGAAAAGACCTTCAAAGATGGCCCCAC
TAATGCTGAATAAGTGATGGCACATTGAAATTTCTGGTATAAAGAAAGGT
TTGAAATATTGCCTGCTCTGAAAGACATTGTGGGAAATTTTAAATCAATT
TTTGTCATGAAATTTGATTTTCATGAAAAACTGTATACCCCCTTTAGAGT
AAGTCCAACCTTTTGTGATCTACCTGAATATATCTCACCTCTCAAAAGTC
TAAGCCAAATTATTTTTGGAATTCCACATAATCTCAAATCCCTGATTATT
TCACAATATATTTTTAACAATTTCTCTTTATCTTGAAAAGAAATATTGTT
CATTAAAGTTCGAAAAAAGAGAGAAATTTGTTTTTTTTTATGTTATAATT
TTAAACTTCTTGTAAATATTTCATTGATTTTATTTGTACATTTTTTGTAA
ATTTTTCTGATTTGATGAAATTTCCTAACAAGAGTTTGCCAATTGAAGCG
CTTATGCGACAGTTAACTTTTTTCATTTCATTTTCATTATAATTACGAAA
TGCATTTTTTATTTCACAGCATGTAATTTTTCCGTCATTTCCATAAATTG
CAAACATATTTACTAATTTATCTTTATCTTTAGACTCTAATAATAACTAA
ACAGATATTTCCTACAGAAAGATAAACAATTCATAATAATGGCAGAACCA
ACCAAAAATCATGACGGCAACTTAGTTTGGGTGGATCTAGAAATGACCGG
TCTGGACATTAATACTTGTCATATCATAGAAATGGCTTGTGTAATCACTG
ATGGAGATCTAAATATTGTGGCAGAAGGGGAGGACCTAATTATCCACCAA
TCAGACGAAATAATGGACAATATGGGAGAGTGGTGCACCAAACAACACGG
AGAATCAGGTCAGTAATACACCTTTTTCCGGTTAGCCGTTTCGTATAAAA
AGTCATTTTTGTTTATGTTTTTGCTTTTAGCCAATGAGATGGTTTGTTTA
CTCGAAATTTTGGTGACTTATTATACGAGGCTGCGTAAGTCAAGATGACG
TCATGTTTTTAGCGGAAGCACCCGAGAAAAGCCAGAGTTTTACAGATTTC
GATCTTTTTTTAGCAACAGAGAGCGGTAAAATCCCGGCTTTCTCGGGTGT
TTCCATTAGAAAAATGACTTACGCATATCAAGAATAATTCTTTGCGAGTA
AAGATTTGGATGAGCAGCTAAACATTTTCAACTTTTCAAGAAAACATTTC
TTTTTAATTTCTTTAGAGCAAACTATTTTGGCAAATAGCAATATAAATTG
GTTCTTTTTGTCTAAAAATTATATTCTTCAACTTCGCTAAAATACATCAA
TGTATCAACCTTTAATGGCATGGAGGGTGCGGGTCTATAATGGTTGAACG
ATGTAAAACAATAGCTTCGGAAATTTGACATCCTTCAAACGGTTGATAGA
TGTATTCCTTATTTCCCCATGTTCCTGTCTCTCTTATCTTCCAGGGTTAA
CACAATCTGTCAAAGACTCACATATCTCTTTACAAGAATGTGAACGCAGG
ATGATTGAGTTTATCAAGAAACATACGGTCAAAGGGAAGAACTGTCTGGC
AGGAAATTCAGTCCACGCTGACAAAGAATTCCTAAAGAAATACATGCCAA
ATTTTATGGAACATTTGCATTATCGTATTATAGATGTTAGTACTGTCAAA
GAACTTACTAGACGTTGGTATCCAAAGGAATTTGGGTCAGCCCCGAGAAA
GACTTTTTCTCATAGAGCCCTACAAGATATTAAAGAGAGCATCGAGGAGC
TACGATACTATAGAAAATCAGTTTTTAAGTGATTTTTTTGTAACTTTTTT
ATTTTTATATAAAGAACTTGGACCATGCGTTGTTTCATCTGTTTATTCTT
GGGTCTGTGTAAAAATGTCTATCATTTTGTTGAACATAATAGAGTAGGGT
GGGG

Coding sequence (CDS) from alignment at scaffold_513:351586..362789-

>TCONS_00070109 ID=TCONS_00070109|Name=TCONS_00070109|organism=Clytia hemisphaerica|type=CDS|length=5424bp|location=Sequence derived from alignment at scaffold_513:351586..362789- (Clytia hemisphaerica)
CCGTCAGCGTTTAACTGATGCTCTATCGTTCGCTGAAAAGACCTTCAAAG
ATGGCCCCACTAATGCTGAATAAAAAAAAAGAAATCACTTGAGACTAAAA
CAACGAGTATGTCGTCTATTAGAAGTTTACAATCATCAAATTATGATCGT
CCATCTTCAAGGTGCAGTAGTTTACAACGGGCTTCATCAAGTAAAAGTGC
TCCCAAAGGAGGTGATATTGAACGGATTGCGAGGTCTGGTACTGATGTCA
CATATACTGTCGATCTCTCATCAATCAATATAAAAGATGTTCCCGACCTT
GGGAAATATAAACACTGTAAATCTCTTGATTTGTCTTGTAATCAAATCAA
GTCTATTTATAAAGATACATTTCAATGTTGTTCTTACTTGAAAGAAATCA
AACTTTATTCTAACCATTTGTCTAAAGTGGAGGGTTTTAGAGAATTGCAA
CATTTGGAGAATTTACAGTTACAATACAACAATATTTCAAAAATAAACAA
TTCATTATCTGGATGTAGAAGTTTAAAATTCTTACGATTGGACTCTAACA
AAATCTCGGTTTTAAAGGGTAAGGAATTTTGTTCATTGCATCAGTTAACG
TATTTGGATATCAGTGCAAACCAACTTGAAGATATCAGTTTTGTGACTGT
GCTACCATTACTCCAAGAGCTTCACTGCACACATAACAAGCTGACAGAAA
TACCTGATATAATGTCACTGAAAAAACTGCAAGAAATTGATCTCAGTCAT
AATACAATATCAAACGTTACTGGTCTCAAAGGATTAGCTAATTTAAATAT
ATTATGCGTCAAAAATAATTTCATATCATCAATGACATCTGTAAAAACAT
TAAAAACATTAACTGAGCTAAATGTTTCGAACAACAAAATCAAATGTTTG
TCACAATTCAAAACAGTGATCCCAAGCATTGAAATACTCAACATTTCTTG
CAATCATATTGAAAACATTGATGAAATTCTACAATTGAAGGATTTTCAGC
ATTTGAAAGAGGTTGAATTTTTGGACAACCCTGTTTTGGAGGAACCAGAA
ACCGACGAACAATTGAAAGCTGCCTTTGAAAGCCTTGATTTGGTTTATCT
TAATGGGAGATCATTAAAGAAGCAACAAGTAAAACGCCCAACAAGTGCGA
TGCGTCCGATGTCAGCTAACCAACTTGTATCTGAGAGAGTTATTTCAAAT
CAACTACAATATGATGAGATGTGCCTATCTGATTTTGAAGACCGGATTAA
TACGCAGTTCATAGCACTACAAGGATTACTCAGTGAGCTTCCAAAGCAAT
CACAGTCACCAGATGGCAGCGACAGCTTTAAAGTCTCAAATACGAAAACA
AAACAGCCGTCAGCGTTTAACTGATGCTCTATCGTTCGCTGAAAAGACCT
TCAAAGATGGCCCCACTAATGCTGAATAAAAAAAAAGAAATCACTTGAGA
CTAAAACAACGAGTATGTCGTCTATTAGAAGTTTACAATCATCAAATTAT
GATCGTCCATCTTCAAGGTGCAGTAGTTTACAACGGGCTTCATCAAGTAA
AAGTGCTCCCAAAGGAGGTGATATTGAACGGATTGCGAGGTCTGGTACTG
ATGTCACATATACTGTCGATCTCTCATCAATCAATATAAAAGATGTTCCC
GACCTTGGGAAATATAAACACTGTAAATCTCTTGATTTGTCTTGTAATCA
AATCAAGTCTATTTATAAAGATACATTTCAATGTTGTTCTTACTTGAAAG
AAATCAAACTTTATTCTAACCATTTGTCTAAAGTGGAGGGTTTTAGAGAA
TTGCAACATTTGGAGAATTTACAGTTACAATACAACAATATTTCAAAAAT
AAACAATTCATTATCTGGATGTAGAAGTTTAAAATTCTTACGATTGGACT
CTAACAAAATCTCGGTTTTAAAGGGTAAGGAATTTTGTTCATTGCATCAG
TTAACGTATTTGGATATCAGTGCAAACCAACTTGAAGATATCAGTTTTGT
GACTGTGCTACCATTACTCCAAGAGCTTCACTGCACACATAACAAGCTGA
CAGAAATACCTGATATAATGTCACTGAAAAAACTGCAAGAAATTGATCTC
AGTCATAATACAATATCAAACGTTACTGGTCTCAAAGGATTAGCTAATTT
AAATATATTATGCGTCAAAAATAATTTCATATCATCAATGACATCTGTAA
AAACATTAAAAACATTAACTGAGCTAAATGTTTCGAACAACAAAATCAAA
TGTTTGTCACAATTCAAAACAGTGATCCCAAGCATTGAAATACTCAACAT
TTCTTGCAATCATATTGAAAACATTGATGAAATTCTACAATTGAAGGATT
TTCAGCATTTGAAAGAGGTTGAATTTTTGGACAACCCTGTTTTGGAGGAA
CCAGAAACCGACGAACAATTGAAAGCTGCCTTTGAAAGCCTTGATTTGGT
TTATCTTAATGGGAGATCATTAAAGAAGCAACAAGTAAAACGCCCAACAA
GTGCGATGCGTCCGATGTCAGCTAACCAACTTGTATCTGAGAGAGTTATT
TCAAATCAACTACAATATGATGAGATGTGCCTATCTGATTTTGAAGACCG
GATTAATACGCAGTTCATAGCACTACAAGGATTACTCAGTGAGCTTCCAA
AGCAATCACAGTCACCAGATGGCAGCGACAGCTTTAAAGTCTCAAATACG
AAAACAAAACAGCCGTCAGCGTTTAACTGATGCTCTATCGTTCGCTGAAA
AGACCTTCAAAGATGGCCCCACTAATGCTGAATAAAAAAAAAGAAATCAC
TTGAGACTAAAACAACGAGTATGTCGTCTATTAGAAGTTTACAATCATCA
AATTATGATCGTCCATCTTCAAGGTGCAGTAGTTTACAACGGGCTTCATC
AAGTAAAAGTGCTCCCAAAGGAGGTGATATTGAACGGATTGCGAGGTCTG
GTACTGATGTCACATATACTGTCGATCTCTCATCAATCAATATAAAAGAT
GTTCCCGACCTTGGGAAATATAAACACTGTAAATCTCTTGATTTGTCTTG
TAATCAAATCAAGTCTATTTATAAAGATACATTTCAATGTTGTTCTTACT
TGAAAGAAATCAAACTTTATTCTAACCATTTGTCTAAAGTGGAGGGTTTT
AGAGAATTGCAACATTTGGAGAATTTACAGTTACAATACAACAATATTTC
AAAAATAAACAATTCATTATCTGGATGTAGAAGTTTAAAATTCTTACGAT
TGGACTCTAACAAAATCTCGGTTTTAAAGGGTAAGGAATTTTGTTCATTG
CATCAGTTAACGTATTTGGATATCAGTGCAAACCAACTTGAAGATATCAG
TTTTGTGACTGTGCTACCATTACTCCAAGAGCTTCACTGCACACATAACA
AGCTGACAGAAATACCTGATATAATGTCACTGAAAAAACTGCAAGAAATT
GATCTCAGTCATAATACAATATCAAACGTTACTGGTCTCAAAGGATTAGC
TAATTTAAATATATTATGCGTCAAAAATAATTTCATATCATCAATGACAT
CTGTAAAAACATTAAAAACATTAACTGAGCTAAATGTTTCGAACAACAAA
ATCAAATGTTTGTCACAATTCAAAACAGTGATCCCAAGCATTGAAATACT
CAACATTTCTTGCAATCATATTGAAAACATTGATGAAATTCTACAATTGA
AGGATTTTCAGCATTTGAAAGAGGTTGAATTTTTGGACAACCCTGTTTTG
GAGGAACCAGAAACCGACGAACAATTGAAAGCTGCCTTTGAAAGCCTTGA
TTTGGTTTATCTTAATGGGAGATCATTAAAGAAGCAACAAGTAAAACGCC
CAACAAGTGCGATGCGTCCGATGTCAGCTAACCAACTTGTATCTGAGAGA
GTTATTTCAAATCAACTACAATATGATGAGATGTGCCTATCTGATTTTGA
AGACCGGATTAATACGCAGTTCATAGCACTACAAGGATTACTCAGTGAGC
TTCCAAAGCAATCACAGTCACCAGATGGCAGCGACAGCTTTAAAGTCTCA
AATACGAAAACAAAACAGCCGTCAGCGTTTAACTGATGCTCTATCGTTCG
CTGAAAAGACCTTCAAAGATGGCCCCACTAATGCTGAATAAAAAAAAAGA
AATCACTTGAGACTAAAACAACGAGTATGTCGTCTATTAGAAGTTTACAA
TCATCAAATTATGATCGTCCATCTTCAAGGTGCAGTAGTTTACAACGGGC
TTCATCAAGTAAAAGTGCTCCCAAAGGAGGTGATATTGAACGGATTGCGA
GGTCTGGTACTGATGTCACATATACTGTCGATCTCTCATCAATCAATATA
AAAGATGTTCCCGACCTTGGGAAATATAAACACTGTAAATCTCTTGATTT
GTCTTGTAATCAAATCAAGTCTATTTATAAAGATACATTTCAATGTTGTT
CTTACTTGAAAGAAATCAAACTTTATTCTAACCATTTGTCTAAAGTGGAG
GGTTTTAGAGAATTGCAACATTTGGAGAATTTACAGTTACAATACAACAA
TATTTCAAAAATAAACAATTCATTATCTGGATGTAGAAGTTTAAAATTCT
TACGATTGGACTCTAACAAAATCTCGGTTTTAAAGGGTAAGGAATTTTGT
TCATTGCATCAGTTAACGTATTTGGATATCAGTGCAAACCAACTTGAAGA
TATCAGTTTTGTGACTGTGCTACCATTACTCCAAGAGCTTCACTGCACAC
ATAACAAGCTGACAGAAATACCTGATATAATGTCACTGAAAAAACTGCAA
GAAATTGATCTCAGTCATAATACAATATCAAACGTTACTGGTCTCAAAGG
ATTAGCTAATTTAAATATATTATGCGTCAAAAATAATTTCATATCATCAA
TGACATCTGTAAAAACATTAAAAACATTAACTGAGCTAAATGTTTCGAAC
AACAAAATCAAATGTTTGTCACAATTCAAAACAGTGATCCCAAGCATTGA
AATACTCAACATTTCTTGCAATCATATTGAAAACATTGATGAAATTCTAC
AATTGAAGGATTTTCAGCATTTGAAAGAGGTTGAATTTTTGGACAACCCT
GTTTTGGAGGAACCAGAAACCGACGAACAATTGAAAGCTGCCTTTGAAAG
CCTTGATTTGGTTTATCTTAATGGGAGATCATTAAAGAAGCAACAAGTAA
AACGCCCAACAAGTGCGATGCGTCCGATGTCAGCTAACCAACTTGTATCT
GAGAGAGTTATTTCAAATCAACTACAATATGATGAGATGTGCCTATCTGA
TTTTGAAGACCGGATTAATACGCAGTTCATAGCACTACAAGGATTACTCA
GTGAGCTTCCAAAGCAATCACAGTCACCAGATGGCAGCGACAGCTTTAAA
GTCTCAAATACGAAAACAAAACAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043650	XLOC_043650	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00070109-protein	TCONS_00070109-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_513	supercontig	scaffold_513:351586..362789 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.0336	13.9486	9.45821	8.34187	11.2434	7.76146	11.307	12.8466	10.4874	13.5665	16.2353	9.27968	4.90947	5.47394	5.62041	6.84881	5.79787	6.5568	4.25666	4.84162	4.99379	4.81685	8.83777	7.19884	10.3172	10.7219	11.2997	11.8663	4.33711	4.06882

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR003591	Leu-rich_rpt_typical-subtyp
IPR032675	L_dom-like
IPR001611	Leu-rich_rpt
IPR025875	Leu-rich_rpt_4

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

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BLAST of TCONS_00070109 vs. Swiss-Prot (Human)
Match: ORN (Oligoribonuclease, mitochondrial OS=Homo sapiens GN=REXO2 PE=1 SV=3)

HSP 1 Score: 237.654 bits (605), Expect = 2.657e-71
Identity = 109/172 (63.37%), Postives = 138/172 (80.23%), Query Frame = 1

Query: 2140 LVWVDLEMTGLDINTCHIIEMACVITDGDLNIVAEGEDLIIHQSDEIMDNMGEWCTKQHGESGLTQSVKDSHISLQECERRMIEFIKKHTVKGKNCLAGNSVHADKEFLKKYMPNFMEHLHYRIIDVSTVKELTRRWYPKEFGSAPRKTFSHRALQDIKESIEELRYYRKSV 2655
            +VWVDLEMTGLDI    IIEMAC+ITD DLNI+AEG +LII Q DE++D+M +WC + HG+SGLT++VK+S I+LQ+ E   + F+++ T  G   LAGNSVH DK+FL KYMP FM+HLHYRIIDVSTVKEL RRWYP+E+  AP+K  SHRAL DI ESI+EL++YR ++
Sbjct:   43 MVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYEFAPKKAASHRALDDISESIKELQFYRNNI 214

The following BLAST results are available for this feature:

BLAST of TCONS_00070109 vs. Swiss-Prot (Human)

BLAST of TCONS_00070109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ORN	2.657e-71	63.37	Oligoribonuclease, mitochondrial OS=Homo sapiens G...	[more]

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TCONS_00070109 (transcript) - C. hemisphaerica