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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070105 ID=TCONS_00070105|Name=TCONS_00070105|organism=Clytia hemisphaerica|type=transcript|length=2087bp
GAAAGATTGTGTGCTATCTCTCGTTTTCAAGGTCCAAATagatacaaaaa
aaattaaattaaatggAATTGAAGGTATCACCATCATTATCTCACACCAC
TGAGAAAGTTTCAATCACGGGAAACGGATTCAAACCCGATTCCCCGATCA
CAATACAAAGTACATTAATTTGTCTAGAAGAAGGATTCGACTTTCAATCT
TATGCACACATTTACACAAACAAAGatggttgttttgatttgaaaacaaa
tgAATCTGTTGGTGGAACTTATACTGGTATTGAAGATATGGGGTTGTTTT
GGTCAATGGAAAAACAAGGGAAAGGGTTTCCTACAGCCACTTTCGTCAAC
GGTTTACAAGACTTAACATTTTGTTTTGGATTTTATAATGGTCACATTGA
CAAGTTTGAAGGTAAGACTTCAATTGCTAAAGCCCAGATTACACGATATT
TAGCTCGCAACATTGAAAGaattaatttacaaaatttcaattttaaaggg
ACTCTTTTTGTGCCAGAGCGTGCTACAAAAGCCCCTGCCATTATCACTTT
GTTTGGTGGTAATAAGAAGAAAAACGTGAAAGAGCATTTTGCTTCATACT
TGGCTCACCAAGGCTTCGTTACATTAGCTCTGGCTTTCTTTGGAGTTGAA
GGTTTACCAAAAACGTACACAGAAACACCGATACGAATCGAGTATTTTGA
AGAAGCAGTTGAATTTCTACGGCAACATGACTCTGTGGATCCAGAGAAAA
TTGGTGTTTTAGGATCTTCAAAAGGCGGTGATATCGCTTACGCAATGATG
TCACATTTACCACAAATCAAAGCTGTGTGTTGCATGAATGGTTGTATAGC
GTCTATGGCCACACAAACAATCTATAAAGGTGAAGTTACAGAGATGATCC
CAGCTGATCCTGCGAGCCTGAAGTTCATTCATGATAATATAGCTAGCATT
TTAGATTGTGTCAATGATCCCATTGATCATCCAGATTCCATACATCAACT
TGAGAGATCAAAGGCAGACCTCCTTGTTATTGTAAGTGGGAGAGATGCCA
ATTGGCCAACCGAAAGATATGCACAACTTGCAAAAGAGAAGATGGACAAA
GTTGGTAAAACCAACTATCAAATTATCAGATATGAAAATATGGGCCATTT
AATCGAGCTGCCTTATCTTCCTATATGCCTTTACGATAAACATCCACTAG
TACCCTTACCAGGGACTATGGTCTTTTTTGGTGGCgaggataaaagaaaa
atgtcTGATGATTATATTGAAGTATGGAGGGATGTAGTACAGTATTTCAA
CAAGTCCTTTGGAATGattgaaaaaacaaaactgaTAGTAAGCAAACTGT
AAATTGAAAGCAAATAACTCAACTTGAATTTGGTATCTGTATATTTATTT
TCGTAATTAACATAATTTCATAATTcctatattttatttttaaaagactA
AAGCTCATTGTGTTGGGACCAACAGAAAATTCCTATCCGTTGGTCCCCGG
AGATGACGGGTATATCCGActgaagttcgaaaatcgacccttacagagac
tgaatcttgaattttctttattatttgaCGTTTTCttccacccttagaga
gactattccccaaaaaattcagccaaaaatttcaaattttagacTAAATT
CCAAGAATTTATATGACCTTAAGAGGGAGCTGGTTTTGAGGGACTTTCGA
GCGTGTAAAAAaggggacccttatggctcgcacatacccggcacccatta
tGCCTAAGTAAATCCCCTCCCCCAGGATTCTCATAAGTGCAGGAGAATGT
GTTCAGGTAATGTATCCATTGAAACTCGATACCTAAGACAAATGTGTTTC
CAGAAGGGAAGGAGCATGGGTATAGAAATATTTGTTTCTAAATTGTTTGG
Ccagtactctcgggtgcctaataaacgtacatgtacgtttatttttttcg
tgtcaaatttcccgcctgtacgcaccttattaggacctatacgtttattt
attttgaagaattttcccgcctgtacgtttattccctcctgtacgtttat
ttattttgacccAATATTGCCCGATTCTTACtggaaa Run BLAST on NCBI transcript from alignment at scaffold_513:335867..341840- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070105 ID=TCONS_00070105|Name=TCONS_00070105|organism=Clytia hemisphaerica|type=transcript|length=5974bp|location=Sequence derived from alignment at scaffold_513:335867..341840- (Clytia hemisphaerica)
GAAAGATTGTGTGCTATCTCTCGTTTTCAAGGTCCAAATAGATACAAAAA
AAATTAAATTAAATGGAATTGAAGGTATCACCATCATTATCTCACACCAC
TGAGAAAGTTTCAATCACGGGAAACGGATTCAAACCCGATTCCCCGATCA
CAATACAAAGTACATTAATTTGTCTAGAAGAAGGATTCGACTTTCAATCT
TATGCACACATTTACACGAACAGAGATGGTTGTTTTGATTTGAAAACAAA
TGAATCTGTTGGTGGAACTTATACTGGCATTGAAGACATGGGGTTGTTTT
GGTCCATGGAAAAACAAGGAAAAGCTTTTCCGATGTCAACTTTTACCAAT
GGTTTACAAAATCTTAGGTATTGTTTTAGTGTCTTCGATGGTCACGTGGA
CAAATTTGAAGGTCATACAGGAAATGCTAAAGTTGTGATTACACGATACA
TAGCTCGTGCCGTTGAACGAATTCTTTTGAGGAATCATAATTTCAAAGGA
ACTCTTTTTGTGCCAGAGCGTGCTACAAAAGCCCCTGCCATTATCACTTT
GTTAGGTGGTAATAAGAAAAAAAACGTGAAAGAGCATTTTGCTTCGTACT
TGGCTCATCAAGGCTTTGTCACCTTAGCTCTGGCTTTCTTTGGAGTTGAA
GGTTTGCCAAAAATGTATGACGAATCTCCAATACGAATGGAATATTTCGA
AGAAGCTATCGAATTTCTACGGCAACATGACTCTGTGGATCCAGAGAAGA
TTGGTGTTTTGGGATCTTCAAAAGGCGGTGATATTGCTTACGCAATGATG
TCACATTTACCACAAATCAAAGCTGTGTGTTGCATGAATGGATGTATAGC
ACCACTAGGCTCGGACGTTTTATACAAAGGGTATCGGACACCTAAGATTC
CTGGTGACATATCGAAGGTACGTTTCATAACCGATAACGTAGTCGACACC
ATCCGCACAGTCAATGATCCTTATGACCATTCTGAATGTATCCATCAAAT
TCATCAATCCAAAGCTGACCTCTTTATAGTGGTGAGTCTAAAAGACACCA
TCTTTCCTGTGTCAAGACATGCTCAATTAGCAAAACAACGTATGGATGAA
GCTGGCAAAATCAATTACCAAATCATAGAGTATCAAAATATGGGGCATTT
AATCGAGTTACCGAACTTGCCAATCTGTTTGTATGATAAACATCCTTTGT
TTGAAGGCTTAATGCTTTTCTTTGGTGGTGATGACAAAAAGTTGATAAGT
AAAGATCATGTTTCTGTTTGGACAGATGTTGTAAAGTTCTTCAAGTCTTC
TTTCACCGTTGATACTGACAATACCAAATCATGTATGATTGAAAGTAAGT
TGTAACATAACCGTTTGGATACTTTTGATTTCATGGTACAATATTTCAAA
TAGTAACAATTTGACGACATACCATATAATGAAGTCGTATGAGTCGAAAA
GATTTGTTTTTATTTTTAGATAATTTTTTTTGTTCAATGGGTTGGACTTA
TGAAAATGTTGGTTTGCCGTCAGCCAACCGACTCTTCTCTAATCTTGCCG
ACCTAAAAACTTTTATTACTATTTCGACGAAGAGATTTTTTTTTCTTCAA
AAATTACAAAATTCCATGAATGACCAAATAAAATTCCGACTGATCGACCC
ACCTCCAAAATCTAGCCTCGGGTGACGGCAAACCAAGAGTTTTTAAGTCC
AGCCTTGTGTATAAGATATGCTAAATAGATGTAGATTTATAGATGTAATA
GTTTTATTTTCGATAATATAATTGTGACATGTTTATAGTTGATAATATTT
TGTGTTGCGTTTTAAGATATGAAATGCCTATATAGATTTAGGCGAGACCA
ATTTGATTAGTTGTTTTATGGGCCCGACCGACCCTGAAATTCCAAATATC
GAAATAGAAATAAAATTGATTTTGCTAGTGACTTTATTCATAGTTGGTAA
TTTTGTGTGTTTTATTTAAGATATGTTATGTAGATTTGTAGGAGTTATAG
TTTTATTTTCTATTTCGACAATTTTAATGTCTGCAATATAACTGTGACAT
ATTTATAGTTGGTGATTTTTTGTGTAGCATTTAAGATATGCTATGCAGAT
GTAGATTTGTAGGAGTTGTAGTTTTATTTTCTATTTCGACAATTTTAATG
TCTGCAATATAATTGTGACATATTTATAGTTGGTGATTTTTTGTGTAGCA
TTTTAAGATATGCTATGCATATGTAGATTTGTAGGAGTTATAGTTTTATT
TTATATTTCGACAATTTTAATGTCTGCAATATAATTGTGACATATTTATA
GTTGGTGATTTTTTGTGTAGCATTTTAAGATATGCTATGCAGATGTAGAT
TTGTAGGAGTTGTAGTTTTATTTTCTATTTCGACAATTTTAATGTCTGTA
ATATAACTGTGACATATTTATAGTTGGTGATTTTTTGTGTAGCATTTTAA
GATATGCTATGCAGATGTAGATTTGTAGGAGTTGTAGTTTTATTTTCTAT
TTCCACAATTTTAATGTCTGCAATATAACTGTGACATATTTATAGTTGGT
GATTTTTTGTGTTGCATTTAAGATATGCTATGCAGATGTAGATTTGAAGA
TGTTGTTGCTTTATATCCAAAGATATAGTTGCAATTTGTTTCATAATCGC
ACGATGAGTTATTCTTTCTTATTTGGCGCGCCTTCAAAGGGAGCAATTAA
TCGTTAATATCGCTCTCGATGCAGCGCCAATGTTTACAAAATTGATTTAA
ATATTTTTTCTTACATTTTTCTTTCATCGAACGTTTTAATTCGAATTTCA
TTTTGTGAGAAAGAAAATTTATAAACTTTAATAAAAGAAAAACGTAGATA
GAAGAAAAAATATAAAACTTTCAGTGTAATTTCTGTAATTTACTTTCCTA
GCGGGGAAAAAGTAGTGAAACAAGTTGTGGGATTAGCTCGTAATCACATA
ATAACTCGTACGATTCGAAAATTGCACTCGTGATTTTTTTGTTTCGAATT
TTCCTCGTCCTTCCTCGGACTCGGAAAATTAATAGCAAAAAAAATCACTC
GTGCAATTATTCTCGAATTGCACTCGTTATCATGTGATCACATATACTAA
TTTTCTTTAGTGAATTACTCAAACTTTACTTTAAAGGAAAGGAATTTTGA
CGGAAAGTAAATGTCTCCAATTTTGCGGCGAATTCGCGAATGTTATATAA
TTCTGTAAACAAGTTCTGAACCTGAAAAGCTGTGCTTAATATTCAGAAAA
TTAATAACGAAAAAAATTACTATCTCTGAAAATTTACTCGGGTAAAATCA
ATTTTCAACCTAAAGTCCATTCGCTTGCCTTATTCTTTCTTTCGCTTTCC
ATATCCGATTATTATTTACGGTTGAAAAGATAAATTAGAGTATTGTAATT
TTAAGAAAAAAAAATTCAATAAAATTTAGAAAAATGAAGATGAAGAAAAA
AAAATTTTAAACTTTTTGTAGCTAGAAAATTTTTTATAAACATTTTTAGT
ACAGGGTATTTTACAGCCAACTAATTTCAGCAGGGAAGTGATTTCAGATA
TACAATTATTTCCCACTTAGAATAATTGCATTGGCTTAAGGCTTTATTGG
CCTTAAAAAACAACAAAGGGTATTTTGACTCTTACAAGTTACCCTCTAGA
GGCTATAACCTTCGATGTAAGAACTGTATTGGAAAAATAACTATAGCTGA
AGTTAAGTTTCCAGTCTATTTTACATCTTCATTTTTTGAATATTTTTTGA
ATTATTTTTTCTTAAAAATTATAATGCTCTGAATTATCTTTTCAACGGTA
TATGATATGTTAGAATCAAAGCATTCGTTGAAAAATGGCAAGCCATACAA
AGATTAGTGCACATCTTGAGCGAATGGAATTCAGGTATCCAAGTATTAAC
TCGATTTCTTTCCTTTCAGTTACGTAATTAAAAGTCAAAAAGTATAACAA
TGGAAATAGATGTTTCACCATCAATATCTCACACTTCTGAGAAAGTACAA
ATCATCGGAAACGGATTCAAACCCGATTCTCCTTTCACAATACAAAGTAC
ATTAATTTGCCCAGAAGAAGGGTTCGATTTTCAATCTTATGCACACATTT
ACACAAACAAAGATGGTTGTTTTGATTTGAAAACAAATGAATCTGTTGGT
GGAACTTATACTGGTATTGAAGATATGGGGTTGTTTTGGTCAATGGAAAA
ACAAGGGAAAGGGTTTCCTACAGCCACTTTCGTCAACGGTTTACAAGACT
TAACATTTTGTTTTGGATTTTATAATGGTCACATTGACAAGTTTGAAGGT
AAGACTTCAATTGCTAAAGCCCAGATTACACGATATTTAGCTCGCAACAT
TGAAAGAATTAATTTACAAAATTTCAATTTTAAAGGGACTCTTTTTGTGC
CAGAGCGTGCTACAAAAGCCCCTGCCATTATCACTTTGTTTGGTGGTAAT
AAGAAGAAAAACGTGAAAGAGCATTTTGCTTCATACTTGGCTCACCAAGG
CTTCGTTACATTAGCTCTGGCTTTCTTTGGAGTTGAAGGTTTACCAAAAA
CGTACACAGAAACACCGATACGAATCGAGTATTTTGAAGAAGCAGTTGAA
TTTCTACGGCAACATGACTCTGTGGATCCAGAGAAAATTGGTGTTTTAGG
ATCTTCAAAAGGCGGTGATATCGCTTACGCAATGATGTCACATTTACCAC
AAATCAAAGCTGTGTGTTGCATGAATGGTTGTATAGCGTCTATGGCCACA
CAAACAATCTATAAAGGTGAAGTTACAGAGATGATCCCAGCTGATCCTGC
GAGCCTGAAGTTCATTCATGATAATATAGCTAGCATTTTAGATTGTGTCA
ATGATCCCATTGATCATCCAGATTCCATACATCAACTTGAGAGATCAAAG
GCAGACCTCCTTGTTATTGTAAGTGGGAGAGATGCCAATTGGCCAACCGA
AAGATATGCACAACTTGCAAAAGAGAAGATGGACAAAGTTGGTAAAACCA
ACTATCAAATTATCAGATATGAAAATATGGGCCATTTAATCGAGCTGCCT
TATCTTCCTATATGCCTTTACGATAAACATCCACTAGTACCCTTACCAGG
GACTATGGTCTTTTTTGGTGGCGAGGATAAAAGAAAAATGTCTGATGATT
ATATTGAAGTATGGAGGGATGTAGTACAGTATTTCAACAAGTCCTTTGGA
ATGATTGAAAAAACAAAACTGATAGTAAGCAAACTGTAAATTGAAAGCAA
ATAACTCAACTTGAATTTGGTATCTGTATATTTATTTTCGTAATTAACAT
AATTTCATAATTCCTATATTTTATTTTTAAAAGACTAAAGCTCATTGTGT
TGGGACCAACAGAAAATTCCTATCCGTTGGTCCCCGGAGATGACGGGTAT
ATCCGACTGAAGTTCGAAAATCGACCCTTACAGAGACTGAATCTTGAATT
TTCTTTATTATTTGACGTTTTCTTCCACCCTTAGAGAGACTATTCCCCAA
AAAATTCAGCCAAAAATTTCAAATTTTAGACTAAATTCCAAGAATTTATA
TGACCTTAAGAGGGAGCTGGTTTTGAGGGACTTTCGAGCGTGTAAAAAAG
GGGACCCTTATGGCTCGCACATACCCGGCACCCATTATGCCTAAGTAAAT
CCCCTCCCCCAGGATTCTCATAAGTGCAGGAGAATGTGTTCAGGTAATGT
ATCCATTGAAACTCGATACCTAAGACAAATGTGTTTCCAGAAGGGAAGGA
GCATGGGTATAGAAATATTTGTTTCTAAATTGTTTGGCCAGTACTCTCGG
GTGCCTAATAAACGTACATGTACGTTTATTTTTTTCGTGTCAAATTTCCC
GCCTGTACGCACCTTATTAGGACCTATACGTTTATTTATTTTGAAGAATT
TTCCCGCCTGTACGTTTATTCCCTCCTGTACGTTTATTTATTTTGACCCA
ATATTGCCCGATTCTTACTGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070105-exon-scaffold_513-1575043694:341632..341840 | TCONS_00070105-exon-scaffold_513-1575043694:341632..341840 | Clytia hemisphaerica | exon |
| TCONS_00070105-exon-scaffold_513-1575043694:335867..337744 | TCONS_00070105-exon-scaffold_513-1575043694:335867..337744 | Clytia hemisphaerica | exon |
| TCONS_00070105-exon-scaffold_513-1510915933:341632..341840 | TCONS_00070105-exon-scaffold_513-1510915933:341632..341840 | Clytia hemisphaerica | exon |
| TCONS_00070105-exon-scaffold_513-1510915933:335867..337744 | TCONS_00070105-exon-scaffold_513-1510915933:335867..337744 | Clytia hemisphaerica | exon |
| TCONS_00070105-exon-scaffold_513-1491911889:341632..341840 | TCONS_00070105-exon-scaffold_513-1491911889:341632..341840 | Clytia hemisphaerica | exon |
| TCONS_00070105-exon-scaffold_513-1491911889:335867..337744 | TCONS_00070105-exon-scaffold_513-1491911889:335867..337744 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_513 | supercontig | scaffold_513:335867..341840 - |
Blast
BLAST of TCONS_00070105 vs. Swiss-Prot (Human)
Match: ACOT1 (Acyl-coenzyme A thioesterase 1 OS=Homo sapiens GN=ACOT1 PE=1 SV=1) HSP 1 Score: 217.624 bits (553), Expect = 8.625e-63 Identity = 139/414 (33.57%), Postives = 217/414 (52.42%), Query Frame = 3
Query: 102 EKVSITGNGFKPDSPITIQSTLICLEEGFDFQSYAHIYTNKDGCFDLKTNESVGGTYTGIEDMGLFWSMEKQGKGFPTATFV--NGLQDLTFCFGFYNGHIDKFEGKTSIAKAQITRY-LARNIERINLQNFNFKGTLFVPERATKAPAIITLFGGNKKKNVKEHFASYLAHQGFVTLALAFFGVEGLPKTYTETPIRIEYFEEAVEFLRQHDSVDPEKIGVLGSSKGGDIAYAMMSHLPQIKAVCCMNGCIASMATQTIYKGEVTEMIPADPASLKFIHDNIASILDCVNDPIDHPD--SIHQLERSKADLLVIVSGRDANWPTERYAQLAKEKMDKVGKTNYQIIRYENMGHLIELPYLPICLYDKHPLVPLPGTMVFFGGEDKRKMSDDYIEVWRDVVQYFNKSFGMIEKT 1328
E V I G P+ P+T++++L E+G FQ++A + G DL+ ++GG++ G+E MGL W++E + P V + L +GH D G+ + + + RY L + R ++ +GTLF+P P I+ +FG + E+ AS LA +GF +ALA++ E LPKT ET + +EYFEEAV +L H V +G+LG SKGG++ +M S L I A +NG +A++ YKGE + + +K D A I+D +N P++ PD S +ER+++ L +V D NW +E YA A +++ G+ QII Y GH IE PY P+C H LV G+ + +GGE R + ++ W+ + +F+K G E T
Sbjct: 17 EPVRIAVRGLAPEQPVTLRASLRD-EKGALFQAHARYRADTLGELDLERAPALGGSFAGLEPMGLLWALEPEK---PLVRLVKRDVRTPLAVELEVLDGH-DPDPGRL-LCRVRHERYFLPPGVRREPVRAGRVRGTLFLPPEPGPFPGIVDMFGTGG--GLLEYRASLLAGKGFAVMALAYYNYEDLPKT-MET-LHLEYFEEAVNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKGITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFLVGQDDHNWKSEFYANEACKRLQAHGRRKPQIICYPETGHYIEPPYFPLCRASLHALV---GSPIIWGGE-PRAHAMAQVDAWKQLQTFFHKHLGGHEGT 416
The following BLAST results are available for this feature:
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