TCONS_00070098 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070098
Unique NameTCONS_00070098
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2697

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070098 ID=TCONS_00070098|Name=TCONS_00070098|organism=Clytia hemisphaerica|type=transcript|length=2697bp
actttcctcaaaacacccaggtaaaatccaggagtcgccttaaagacatc
tgttcttaaaatccaggaacacattttaaggaaaaacacatacaattttc
cagcggacaatCTTCATGTCCTTAATGTTCAAAAAATCCTAGAgctaaaa
ttgtgaaaaacacaaccagatgccagatttttttccagggagcttcaaaa
ttttcttaaaaggtctcattttctaggagcattttaacttgctttagaga
atagctgttatatttttccaggagcataatatttctagagaacagatata
cattttccaggagtcccattttttcccagaacagatgatataatccagga
gagcccaggatacagaacagatagttttttccaggagaaagggacctcaa
gaacagatatcTCATACTTCCTAGCCAGTGGCTGCTCTTGCATAAACAAA
GATGAAACATACACCACAGAGAGGGGAAAACATCAGGAAAGGTTAATTGC
AGAAAAGTTTGAGGAAACCATAGAAACGGCAACAAGGCATAAACCAATGG
AAATCACCACAATGACCATAAGCAGAATAatcaaaagctgaaaaaaagaa
aagcacCAGATAGAGAACAATGGAGAAACGAAATGCTAATAGGAGGGGGA
ACTGAAATCAAAGAGCACCTCAGAatcatttttaacaaaatttcaaacGG
AGAGGATATACCCCAAGCGTGGCAACGAGTCAAAATAAAAAGCATCCACA
AGAAAGGATCCTCACTGGAAATGAACAATAGGAGAGGAATCTTTATTACA
AACGTGGTCAGTAAAGTATGGGAAAAAGTGCTCCtagaaaaaatgaatga
aacaatgaaaattgaCATAAACCAGAACGGTGGGCAGAAGGGAAGAGGAA
CCTTGGACAACTTGATGGCCATACTGAGCATACAGCAGATGGCAAAGCAT
AGAGAAACATACATTGTCTTTGCAGACGCAAATAAGTTTTTCGACCGACT
TTGGCTTAAAGACTGCATCAATGACTTAAAAGATGCAGGAGTGAGAGAAG
CTGAAGCTAGACAAGTGTTCGAACTAAACAAGAAATGCCAAATCATCATT
GACACCCCAGTGGGTTCCACACAGGAGATAGAGATAGGGGAGACCGTGAA
GCAAGGAATAATTTTGGGGCCACAACTTTGCTGTGCATCAACACTGGTGG
TGAACAAAGTTGGGCCcggtatgtatgtatgtaattGACACTTGGGTGCG
GTATGGTAACATCAATGGCACCAGGGCTACAAGTAAATGCGCTAGCTTAC
GTAGATGACATTGCTGGTGCAGATTCTAAACTGGCAGCAGAGAACACTTT
GAAAGCACTCAAGGAGATGGATGAGACAAAAAATTCCCCTTCTCGACCTC
AAAGACGAAAATACTCCACatagagaagaaaaagaagaataaaaagaTGG
CTatttttgtcaaggcaggaTCCTGCTGATTTGTTAAGGTGGAAGGcatc
ttttgcttgtaaaatgacgttgctgctgttcacacttattggaaatttta
aacgagtatcattcttgaggtttttttaccacttcctctgggagaggtGA
GAGCTGTCCTATCCTCCACTTGTTGATGGTGGTGGCTGTCGTCAACTGCT
GAAATCTTCCATAAATGGTGTAATGGTTGTTTACTTTGTGGCATTCAATC
TTCATGTCACATTTTTGTGAtaattgattggagtaaccattACTATTACA
TCAATTACAATTACAATCTCatggaaaactatttttatggcttgatcaaa
ccaaatatctgcaaCAGCCCCAAGTCAGATTTATAAAACAACATTCGGAT
TTCGAAATACTTTAACTTTTTAGACCCTATGATTTTATTGGAATTATGTC
ATGGTTAAACTTAACATTCAGCGGGTATTGTTgccaaacaatgatttttt
ttgtcacGTTGTCAGCCAATACTGTTCGACTATTTGAGTATCACTTTTAC
GAAATAGATCATACGCCATCGAATATTGGGCGATTGTGGTCCTGTGTGGT
CAGTAATATTCGTTGAGGCTGATTGAGGAGGTACGCTGCTGTGAagaaca
gacaaaatattttgttgtggtttgagatcaagcaaacgCCTATTATGTAC
GTATTAATGCAACACAAGAAGTGGGTCAAATTGTGATCATGTTTTGTTCA
ATGATATTTATAACTTTTACATACTAAGGCAGCAATCACTAATACACTCT
ccattttatttgaatctttttcagtcagtagtagaaaatttcaaattgac
tGGTCATTCACTGGTGCAGGTGGTCATCAGTTCAAACACTTTAAATAATT
CCCAAataaaataagcacttttgaagcattttcctTAAAACTCTTGAGTG
TGTTTTTGGCGAAGTGAAATGAAGATGTTTCTGATCGCCGCCTTAGAATA
TACtataagtggataaattttggcgtggatttaatttggcaattggccaa
aatacaattttaaacaGGGATTTAGCTGACTTGACGATAgatcaatttca
taaaatttggcggggatttgaTTTGGCGAAATGCAAATTTTGAGACACTT
AAATTGgtgaaaaattactttaaaatatactgaaaagttgttatttttta
cataatattatttttgttaaatttggcgggaatttagtTTGGTGAAT
Run BLAST on NCBI

transcript from alignment at scaffold_513:251794..256267-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070098 ID=TCONS_00070098|Name=TCONS_00070098|organism=Clytia hemisphaerica|type=transcript|length=4474bp|location=Sequence derived from alignment at scaffold_513:251794..256267- (Clytia hemisphaerica)
ACTTTCCTCAAAACACCCAGGTAAAATCCAGGAGTCGCCTTAAAGACATC
TGTTCTTAAAATCCAGGAACACATTTTAAGGAAAAACACATACAATTTTC
CAGCGGACAATCTTCATGTCCTTAATGTTCAAAAAATCCTAGAGCTAAAA
TTGTGAAAAACACAACCAGATGCCAGATTTTTTTCCAGGGAGCTTCAAAA
TTTTCTTAAAAGGTCTCATTTTCTAGGAGCATTTTAACTTGCTTTAGAGA
ATAGCTGTTATATTTTTCCAGGAGCATAATATTTCTAGAGAACAGATATA
CATTTTCCAGGAGTCCCATTTTTTCCCAGAACAGATGATATAATCCAGGA
GAGCCCAGGATACAGAACAGATAGTTTTTTCCAGGAGAAAGGGACCTCAA
GAACAGATATCTCATACTTCCTAGCCAGTGGCTGCTCTTGCATAAACAAA
GATGAAACATACACCACAGAGAGGGGAAAACATCAGGAAAGGTTAATTGC
AGAAAAGTTTGAGGAAACCATAGAAACGGCAACAAGGCATAAACCAATGG
AAATCACCACAATGACCATAAGCAGAATAATCAAAAGCTGAAAAAAAGAA
AAGCACCAGATAGAGAACAATGGAGAAACGAAATGCTAATAGGAGGGGGA
ACTGAAATCAAAGAGCACCTCAGAATCATTTTTAACAAAATTTCAAACGG
AGAGGATATACCCCAAGCGTGGCAACGAGTCAAAATAAAAAGCATCCACA
AGAAAGGATCCTCACTGGAAATGAACAATAGGAGAGGAATCTTTATTACA
AACGTGGTCAGTAAAGTATGGGAAAAAGTGCTCCTAGAAAAAATGAATGA
AACAATGAAAATTGACATAAACCAGAACGGTGGGCAGAAGGGAAGAGGAA
CCTTGGACAACTTGATGGCCATACTGAGCATACAGCAGATGGCAAAGCAT
AGAGAAACATACATTGTCTTTGCAGACGCAAATAAGTTTTTCGACCGACT
TTGGCTTAAAGACTGCATCAATGACTTAAAAGATGCAGGAGTGAGAGAAG
CTGAAGCTAGACAAGTGTTCGAACTAAACAAGAAATGCCAAATCATCATT
GACACCCCAGTGGGTTCCACACAGGAGATAGAGATAGGGGAGACCGTGAA
GCAAGGAATAATTTTGGGGCCACAACTTTGCTGTGCATCAACACTGGTGG
TGAACAAAGTTGGGCCCGGTATGTATGTATGTAATGTATGTAATAGTTTA
TTTCAAGTTGACGAACAGGTAGCAACAAAGGCTAATAAAAGTCAACGCTA
CTTTACAATTTGTAAGGTGATTACAAAAAGCCGACACCGTCAATATAGGT
CCGGCAGTTTCTACACGGGCATGATGTAGGCCTCCACCTCGGGTGAGTTA
GGGCGTGTCTAGATTTAAAAAAAAACACAAATCCCGAATCCGCGACCAAT
AGCACCCATTCTCACGGATTCACTTATGGATTTTTAGATGACCTATACCT
TAAAGTTTCAGGACCCAGTGTTACGTAATTAAATATTAAGCTAAAAATTA
ATTATTAAAGAAAGTGTGAATTGTGACGTCATCAAATTATGACGTCATAA
ATCGTAAATTAGCTCTAACTCTATAAGTACATGTCATATCGTTGTCAAAT
TTGGACCAAAGACGCATCTTAATGGTGCCGAACTTTTCAATGAAAATTTT
TTTGAAGATTTTGATGACGTCAGCAAAAAATGCAAAAAATCGAAAAGTAC
AATTTTTTGCTGACGTCATCAAATTTTTCCAAATTTTTTATTTCAAAAAG
TTACATTTTAGTTAGATGCATCTTTGGTTCAAATTTGGGATAGATTTGAC
ATGTATTTTTTATATTGTAGCGATTATACGATTCACGACGTCACAAAATT
CGATCAAATTATGACGTCATGATTACACTTTCTTTAATAATTAATTTTTA
GGTTAATATTTAATTACGTAACAACCGGGCCCTGAAACCTTAAGGTATAG
AGGTACTTTAGAGCCCTAAGTGAATCTCTGAATCTGGCTGCTATTGGTAG
CGAAAACTTAGGGTAAACTGTTAGGTTTTTGAGACTTGCCCTAAGTCACT
CGAGACTGCTTAATCTTTTCCTTACAAATACTAAGATCGACTATATCTCT
ATACTCATCCGGAATTAATTCCCAAACTTTTGGCCCTAAAAATGAAAGTG
ACTCTAAACCGTGAAAAACAGAGTTTATTTCTCTTGATCTTCTGAAGTAA
GGCGTTTTGCGATTTACTTTGATATTTTCATCATGTTTGAAAATTTCTTT
AGTTAGATCTGATATGTTATTTTTACATTTGAAAAGTTCTATTGCTAACT
GAAGATTTTTTTTGGTGGAATTTGATGGCACCGTCTTTCTCTAAAAGCTG
CTCAAAAGTAGATGTATGATCAGAATACACTATCCTCAGACATCTTTCGT
GGAGGTGATTTATTTTTTTATCTAGCCTGCGAACATGAAACATCCAGACA
AGCGAACAATAATTGACTTGACTTCGAAAGAAGGCATTCATGAGCCTTTG
CTTTTTCTTTTGATTCATGTACGGTGCTACTCTCGCAAGTGCACTGATTT
TCTGGCTAGCTTTCTTATAAATCGTGTTAATATGTGCCTCAAAAGTCAGA
CAGTTGTCAAAAGTTAATCCTAGGATCTTGCCTTAGTTGCTGTTAGAGAT
GCGTTCATTCTGTATAGTAATGAAGATTTCTTTGCTAGTATTGTTAGCTA
TCAACTCAGACTTGTCTGCATTTTCTTTCATTTGATTTTGGGTTATCCAT
TCAAAGATGATAGCAGCTCCATTCGAGAGCTCCTCACCAACCTGTTCCCA
AGAGTATGGCTAAAAGTGGAGTTTGTGTACTCTTACCTTTTCTATATCCA
AATTGTCTATTGCTCAAAATGTTGTTAAAGTAGGTTGTGATTTTCCCGAC
TTCCTCTTTCGTTGTTGGTATAAAGGAAAATTTATTTAGATATTCAGTTT
TCTTGATTTCAGTGACACTTGGGTGCGGTATGGTAACATCAATGGCACCA
GGGCTACAAGTAAATGCGCTAGCTTACGTAGATGACATTGCTGGTGCAGA
TTCTAAACTGGCAGCAGAGAACACTTTGAAAGCACTCAAGGAGATGGATG
AGACAAAAAATTCCCCTTCTCGACCTCAAAGACGAAAATACTCCACATAG
AGAAGAAAAAGAAGAATAAAAAGATGGCTATTTTTGTCAAGGCAGGATCC
TGCTGATTTGTTAAGGTGGAAGGCATCTTTTGCTTGTAAAATGACGTTGC
TGCTGTTCACACTTATTGGAAATTTTAAACGAGTATCATTCTTGAGGTTT
TTTTACCACTTCCTCTGGGAGAGGTGAGAGCTGTCCTATCCTCCACTTGT
TGATGGTGGTGGCTGTCGTCAACTGCTGAAATCTTCCATAAATGGTGTAA
TGGTTGTTTACTTTGTGGCATTCAATCTTCATGTCACATTTTTGTGATAA
TTGATTGGAGTAACCATTACTATTACATCAATTACAATTACAATCTCATG
GAAAACTATTTTTATGGCTTGATCAAACCAAATATCTGCAACAGCCCCAA
GTCAGATTTATAAAACAACATTCGGATTTCGAAATACTTTAACTTTTTAG
ACCCTATGATTTTATTGGAATTATGTCATGGTTAAACTTAACATTCAGCG
GGTATTGTTGCCAAACAATGATTTTTTTTGTCACGTTGTCAGCCAATACT
GTTCGACTATTTGAGTATCACTTTTACGAAATAGATCATACGCCATCGAA
TATTGGGCGATTGTGGTCCTGTGTGGTCAGTAATATTCGTTGAGGCTGAT
TGAGGAGGTACGCTGCTGTGAAGAACAGACAAAATATTTTGTTGTGGTTT
GAGATCAAGCAAACGCCTATTATGTACGTATTAATGCAACACAAGAAGTG
GGTCAAATTGTGATCATGTTTTGTTCAATGATATTTATAACTTTTACATA
CTAAGGCAGCAATCACTAATACACTCTCCATTTTATTTGAATCTTTTTCA
GTCAGTAGTAGAAAATTTCAAATTGACTGGTCATTCACTGGTGCAGGTGG
TCATCAGTTCAAACACTTTAAATAATTCCCAAATAAAATAAGCACTTTTG
AAGCATTTTCCTTAAAACTCTTGAGTGTGTTTTTGGCGAAGTGAAATGAA
GATGTTTCTGATCGCCGCCTTAGAATATACTATAAGTGGATAAATTTTGG
CGTGGATTTAATTTGGCAATTGGCCAAAATACAATTTTAAACAGGGATTT
AGCTGACTTGACGATAGATCAATTTCATAAAATTTGGCGGGGATTTGATT
TGGCGAAATGCAAATTTTGAGACACTTAAATTGGTGAAAAATTACTTTAA
AATATACTGAAAAGTTGTTATTTTTTACATAATATTATTTTTGTTAAATT
TGGCGGGAATTTAGTTTGGTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043646XLOC_043646Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070098-exon-scaffold_513-1575043694:255033..256267TCONS_00070098-exon-scaffold_513-1575043694:255033..256267Clytia hemisphaericaexon
TCONS_00070098-exon-scaffold_513-1575043694:251794..253255TCONS_00070098-exon-scaffold_513-1575043694:251794..253255Clytia hemisphaericaexon
TCONS_00070098-exon-scaffold_513-1510915933:255033..256267TCONS_00070098-exon-scaffold_513-1510915933:255033..256267Clytia hemisphaericaexon
TCONS_00070098-exon-scaffold_513-1510915933:251794..253255TCONS_00070098-exon-scaffold_513-1510915933:251794..253255Clytia hemisphaericaexon
TCONS_00070098-exon-scaffold_513-1491911889:255033..256267TCONS_00070098-exon-scaffold_513-1491911889:255033..256267Clytia hemisphaericaexon
TCONS_00070098-exon-scaffold_513-1491911889:251794..253255TCONS_00070098-exon-scaffold_513-1491911889:251794..253255Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:251794..256267 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.53265e-05	0.000104365	0.000102883	0.000211055	0.000689905	0.000349265	1.75115e-08	0.870275	1.24377	0.000494333	0.000380665	0.000253424	1.92187e-09	0	0.651998	3.73173e-05	8.26172e-05	5.85235e-05	0.000155498	0.000106755	6.45111e-05	0.000182085	1.53822e-05	1.03399e-05	0.00012733	0.94214	8.98742e-05	0.000144526	8.14e-05	0.00023885
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070098 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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