TCONS_00070095 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070095
Unique NameTCONS_00070095
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1129

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070095 ID=TCONS_00070095|Name=TCONS_00070095|organism=Clytia hemisphaerica|type=transcript|length=1129bp
TATTTTTCTCAACATTAGATCTTTTCTTTAAAACTCTTTGGGTCATGATA
ATTTAGAAAGGAAAAAACAGTATCAGCATGAAACTAGGTATCACTTTAAA
CTgtaaaatgaattttgaaatcatgACTCACCAATCCATTTTGTCACAAA
CTTTTGATATATTTGCTCAGTAACACTGTCAAGTAGATTGTTTCTGTTTG
AAATGGATTGGTCATCCAGTTTGATGTCATACTTGGTGCTTAGTTTTCCC
ACTGCATACAGTATAAAAGCATCTTCAAACCTACGTCTATCAAGTTGCTT
CCTTTCATCTTTATGTGCGTTTTTTGATGTTCTTTGTCTCTTTGGGGTGT
TGATTTCTTTGGGCAGCAAGTGATATCTCAGTGAGTTGTTGAAGATTTCA
CATTTTGCACGGAGTGACATGTGATTGATGACTAGCTCCCACTCGTATTT
TTGCAACATTTGAATTGATACTGCTGTATCCTCTGTACTCAAGAGCAATC
TACTTTGCAAGAATTCTGAATTTAGAATTCGTTTTCCAGCTCTTGAATAA
AATGTTCCAAAATCTGTGAGGTTACAAAATTTGCACCTGCTTGTAAACCT
CCTAAGTTTATTTGATCTGTCTTAAGAATAGCCAATTGCAATCTTGTAAT
CACCattcaacaaaagttttttggaacatattttacatttttcttgaGGA
ATAATAAAGTCTGTAACAATTTTTCTAACATTTAACGTGCCCTTCAAGGA
GTCGGTGATGTTCCTTCCCTTGGTAACAAATGGTTTAAGTTCCCATTCGT
CCTGTGGTGGCTTCCCCAAGACTTCTATGAAGCAAAATGTAGATGCTGGC
TGGAAAATGTACATGATTTCTCCAAATTTTTCGTATAATTCAGTAATCAA
GTATTGATTTCTACTATTTAGTAAAtccatttaaaataaaagaaagtgaa
GTTTAGTTATAATTACCAATTATGACTGAAATTAAAAGTGAAATCTTCTA
AAGTCAGTTTGACtttcatttatttttgaaatcattctaTCCGATAAGCG
ATCTGGATACAAAAAAGTTCAATGTGGTTTTCAGAAGACAAAGAAACATG
ACACTGTTTAACAcaagacaaaaaaaata
Run BLAST on NCBI

transcript from alignment at scaffold_513:197987..199409-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070095 ID=TCONS_00070095|Name=TCONS_00070095|organism=Clytia hemisphaerica|type=transcript|length=1423bp|location=Sequence derived from alignment at scaffold_513:197987..199409- (Clytia hemisphaerica)
TATTTTTCTCAACATTAGATCTTTTCTTTAAAACTCTTTGGGTCATGATA
ATTTAGAAAGGAAAAAACAGTATCAGCATGAAACTAGGTATCACTTTAAA
CTGTAAAATGAATTTTGAAATCATGACTCACCAATCCATTTTGTCACAAA
CTTTTGATATATTTGCTCAGTAACACTGTCAAGTAGATTGTTTCTGTTTG
AAATGGATTGGTCATCCAGTTTGATGTCATACTTGGTGCTTAGTTTTCCC
ACTGCATACAGTATAAAAGCATCTTCAAACCTACGTCTATCAAGTTGCTT
CCTTTCATCTTTATGTGCGTTTTTTGATGTTATAAATTGGTAAGATATAA
GGCATTAATATTGTTTAAATTGTTCAATTCAAATTTTCACAGGTTGTCAC
AACTTACAATTTTTAAAATTTCAATGCTTTTTTAAATAATCATATTTTCA
TGAGAACTAATATCTGTGGATTTAATTAGTTTCCGCAGTTGTCAAAAGCT
TTTTTGATATCTAGCTAAAATATTCCTCGAATCCATCATGATTGCTTAAA
AGTTCAATTCCCAATTAACCATTTGTTTTTTATATTATCTTGTCAAAGTT
AATAGGACTTGCTGTTAATGAATACCTTTGTCTCTTTGGGGTGTTGATTT
CTTTGGGCAGCAAGTGATATCTCAGTGAGTTGTTGAAGATTTCACATTTT
GCACGGAGTGACATGTGATTGATGACTAGCTCCCACTCGTATTTTTGCAA
CATTTGAATTGATACTGCTGTATCCTCTGTACTCAAGAGCAATCTACTTT
GCAAGAATTCTGAATTTAGAATTCGTTTTCCAGCTCTTGAATAAAATGTT
CCAAAATCTGTGAGGTTACAAAATTTGCACCTGCTTGTAAACCTCCTAAG
TTTATTTGATCTGTCTTAAGAATAGCCAATTGCAATCTTGTAATCACCAT
TCAACAAAAGTTTTTTGGAACATATTTTACATTTTTCTTGAGGAATAATA
AAGTCTGTAACAATTTTTCTAACATTTAACGTGCCCTTCAAGGAGTCGGT
GATGTTCCTTCCCTTGGTAACAAATGGTTTAAGTTCCCATTCGTCCTGTG
GTGGCTTCCCCAAGACTTCTATGAAGCAAAATGTAGATGCTGGCTGGAAA
ATGTACATGATTTCTCCAAATTTTTCGTATAATTCAGTAATCAAGTATTG
ATTTCTACTATTTAGTAAATCCATTTAAAATAAAAGAAAGTGAAGTTTAG
TTATAATTACCAATTATGACTGAAATTAAAAGTGAAATCTTCTAAAGTCA
GTTTGACTTTCATTTATTTTTGAAATCATTCTATCCGATAAGCGATCTGG
ATACAAAAAAGTTCAATGTGGTTTTCAGAAGACAAAGAAACATGACACTG
TTTAACACAAGACAAAAAAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043644XLOC_043644Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070095-exon-scaffold_513-1575043694:199079..199409TCONS_00070095-exon-scaffold_513-1575043694:199079..199409Clytia hemisphaericaexon
TCONS_00070095-exon-scaffold_513-1575043694:197987..198784TCONS_00070095-exon-scaffold_513-1575043694:197987..198784Clytia hemisphaericaexon
TCONS_00070095-exon-scaffold_513-1510915933:199079..199409TCONS_00070095-exon-scaffold_513-1510915933:199079..199409Clytia hemisphaericaexon
TCONS_00070095-exon-scaffold_513-1510915933:197987..198784TCONS_00070095-exon-scaffold_513-1510915933:197987..198784Clytia hemisphaericaexon
TCONS_00070095-exon-scaffold_513-1491911889:199079..199409TCONS_00070095-exon-scaffold_513-1491911889:199079..199409Clytia hemisphaericaexon
TCONS_00070095-exon-scaffold_513-1491911889:197987..198784TCONS_00070095-exon-scaffold_513-1491911889:197987..198784Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:197987..199409 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.716302	0.425977	1.71599	1.93169	0.083129	0.113791	1.35595	0.820122	0.579822	0.541572	0.707503	0.71242	0.166729	0.193901	0.214375	0.374524	0.422062	0.239879	0.564434	0.378671	1.6451	1.27778	1.03801	1.59294	0.736978	0.697261	0.238415	0.056432	0.224717	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070095 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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