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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070094 ID=TCONS_00070094|Name=TCONS_00070094|organism=Clytia hemisphaerica|type=transcript|length=422bp
gtAGATGGTAGATGATTTCACGATGAAGTTGCGACAATTCACGGAAGAAG
AACTGGACCGAGTTTACAATGAAGATCAATTATATTTCATCGAAGACAAT
TGGTCGACCATCATCCATGATGATTACTTCACAGCACGAATGAAAGAACA
ACAAGCTGTCATTTGGGAAATGATCAAAACTGAAAGTAATTACATTTGCA
GAATGAAACTTATACTTATGgtttttcaacaaatttttcgaATTGCACAA
CGAGAAGGCGAACTCACCAACATCAAACGAGAAGAAATCTTCGCCAACAT
CGATCAAGTCTTTCTGGCCAATGATGAGATATGGAAGAAATATTTCATTG
AAATCGTCAAAAAAGCTCGTATCAAAAGAGGACCGATCAAACCCAGTGAA
TTATTGGCCCCTTTTCATATGG Run BLAST on NCBI protein sequence of TCONS_00070094-protein >TCONS_00070094-protein ID=TCONS_00070094-protein|Name=TCONS_00070094-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MVDDFTMKLRQFTEEELDRVYNEDQLYFIEDNWSTIIHDDYFTARMKEQQ
AVIWEMIKTESNYICRMKLILMVFQQIFRIAQREGELTNIKREEIFANID
QVFLANDEIWKKYFIEIVKKARIKRGPIKPSELLAPFHM Run BLAST on NCBI transcript from alignment at scaffold_513:104356..105156- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070094 ID=TCONS_00070094|Name=TCONS_00070094|organism=Clytia hemisphaerica|type=transcript|length=801bp|location=Sequence derived from alignment at scaffold_513:104356..105156- (Clytia hemisphaerica)
GTAGATGGTAGATGATTTCACGATGAAGTTGCGACAATTCACGGAAGAAG
AACTGGACCGAGTTTACAATGAAGATCAATTATATTTCATCGAAGACAAT
TGGTCGACCATCATCCATGATGATTACTTCACAGCACGAATGAAAGAACA
ACAAGCTGTCATTTGGGAAATGATCAAAACTGAAAGTAATTACATTTGCA
GAATGAAACTTATACTTATGGTGAGTCACTCATAAAAACTCTGTGTAACA
TTATGAAACCCCACGTCATAAACACTCTTTCAGTAGGAAAAATTATCCAA
GCGACCATAAATTCCCGTCATCGACAAACTACTGTACACTGAATTCCCAT
CATCGCTCTACTGTTAAAAAAAATAAAAGTTGCTCTCATTCCAGTTTTGC
ACTTTCTTTGGTGGTTTCAGTCTTGTATCATTATAGTGTATTGGCTAAGA
TGTATACTGAGCCCCGATCCCATCCGCGGTTTGTGTTATCATAAGGGAGA
CTTACTTCACTCAATAGTTTTACTTATTACGATTTTTCTCTTTCCATCCA
TCACGGTGGCCTAAAGTTTAATTCTTTTCAACGCACCTTGACGTTTCAGG
TTTTTCAACAAATTTTTCGAATTGCACAACGAGAAGGCGAACTCACCAAC
ATCAAACGAGAAGAAATCTTCGCCAACATCGATCAAGTCTTTCTGGCCAA
TGATGAGATATGGAAGAAATATTTCATTGAAATCGTCAAAAAAGCTCGTA
TCAAAAGAGGACCGATCAAACCCAGTGAATTATTGGCCCCTTTTCATATG
G Coding sequence (CDS) from alignment at scaffold_513:104356..105156- >TCONS_00070094 ID=TCONS_00070094|Name=TCONS_00070094|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at scaffold_513:104356..105156- (Clytia hemisphaerica)
GTTTTTCAACAAATTTTTCGAATTGCACAACGAGAAGGCGAACTCACCAA
CATCAAACGAGAAGAAATCTTCGCCAACATCGATCAAGTCTTTCTGGCCA
ATGATGAGATATGGAAGAAATATTTCATTGAAATCGTCAAAAAAGCTCGT
ATCAAAAGAGGACCGATCAAACCCAGTGAATTATTGGCCCCTTTTCATAT
GATGGTAGATGATTTCACGATGAAGTTGCGACAATTCACGGAAGAAGAAC
TGGACCGAGTTTACAATGAAGATCAATTATATTTCATCGAAGACAATTGG
TCGACCATCATCCATGATGATTACTTCACAGCACGAATGAAAGAACAACA
AGCTGTCATTTGGGAAATGATCAAAACTGAAAGTAATTACATTTGCAGAA
TGAAACTTATACTTATGGTTTTTCAACAAATTTTTCGAATTGCACAACGA
GAAGGCGAACTCACCAACATCAAACGAGAAGAAATCTTCGCCAACATCGA
TCAAGTCTTTCTGGCCAATGATGAGATATGGAAGAAATATTTCATTGAAA
TCGTCAAAAAAGCTCGTATCAAAAGAGGACCGATCAAACCCAGTGAATTA
TTGGCCCCTTTTCATATGATGGTAGATGATTTCACGATGAAGTTGCGACA
ATTCACGGAAGAAGAACTGGACCGAGTTTACAATGAAGATCAATTATATT
TCATCGAAGACAATTGGTCGACCATCATCCATGATGATTACTTCACAGCA
CGAATGAAAGAACAACAAGCTGTCATTTGGGAAATGATCAAAACTGAAAG
TAATTACATTTGCAGAATGAAACTTATACTTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070094-exon-scaffold_513-1575043694:104937..105156 | TCONS_00070094-exon-scaffold_513-1575043694:104937..105156 | Clytia hemisphaerica | exon |
| TCONS_00070094-exon-scaffold_513-1575043694:104356..104557 | TCONS_00070094-exon-scaffold_513-1575043694:104356..104557 | Clytia hemisphaerica | exon |
| TCONS_00070094-exon-scaffold_513-1510915933:104937..105156 | TCONS_00070094-exon-scaffold_513-1510915933:104937..105156 | Clytia hemisphaerica | exon |
| TCONS_00070094-exon-scaffold_513-1510915933:104356..104557 | TCONS_00070094-exon-scaffold_513-1510915933:104356..104557 | Clytia hemisphaerica | exon |
| TCONS_00070094-exon-scaffold_513-1491911889:104937..105156 | TCONS_00070094-exon-scaffold_513-1491911889:104937..105156 | Clytia hemisphaerica | exon |
| TCONS_00070094-exon-scaffold_513-1491911889:104356..104557 | TCONS_00070094-exon-scaffold_513-1491911889:104356..104557 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_513 | supercontig | scaffold_513:104356..105156 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000219 | DH-domain |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0035023 | regulation of Rho protein signal transduction |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005089 | Rho guanyl-nucleotide exchange factor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0035023 |
regulation of Rho protein signal transduction |
| molecular_function |
GO:0005089 |
Rho guanyl-nucleotide exchange factor activity |
Blast
The following BLAST results are available for this feature:
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