TCONS_00070093 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070093
Unique NameTCONS_00070093
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070093 ID=TCONS_00070093|Name=TCONS_00070093|organism=Clytia hemisphaerica|type=transcript|length=328bp
AGAAAGCATGGCAGTCAATATGTATACTCCTGCACCATTATCAAATGAAC
AAACTCCAGGACCCGGTCATCGTGGATCTACCGCTGTATCTGGATTGAAT
ATGTCTCCTACTTTCTCGCCTCAAGATGATTTGTTAGATGGAGTTTTGAA
TGAaaTACCAGACAACGATCATTCTTTCAACGGTCATCATctgaacaaca
acaacaacaatcctTTTTTCCAATCAAATGTAACTGAATATCGCATAACT
AAACTGGAGAAGCAGGTTGAGACGCTGACCCAATTGGTGGCTTTAATGAG
TCGAAACCAAGCTGCTGAACAAAACGTA
Run BLAST on NCBI

protein sequence of TCONS_00070093-protein

>TCONS_00070093-protein ID=TCONS_00070093-protein|Name=TCONS_00070093-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
ESMAVNMYTPAPLSNEQTPGPGHRGSTAVSGLNMSPTFSPQDDLLDGVLN
EIPDNDHSFNGHHLNNNNNNPFFQSNVTEYRITKLEKQVETLTQLVALMS
RNQAAEQNV
Run BLAST on NCBI

transcript from alignment at scaffold_513:101213..102280-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070093 ID=TCONS_00070093|Name=TCONS_00070093|organism=Clytia hemisphaerica|type=transcript|length=1068bp|location=Sequence derived from alignment at scaffold_513:101213..102280- (Clytia hemisphaerica)
AGAAAGCATGGCAGTCAATATGTATACTCCTGCACCATTGTAGGTTTTTA
AACTGAACACTTTATCTTAATTCAGCCAGCTGTCTTATCAATTCTTGGTG
GGTGCTTGATAGGGAATTCATTTTTAAGATATCATTATGATATCTTTCCA
AGGAGGTGCTATTTTTTAGTAGGGCATTTTTCTATCGAGAATTATCTTCA
AGGTCTACTCAGCATATTGCTTGTTTTAAATAGATCAAATGAACAAACTC
CAGGACCCGGTCATCGTGGATCTACCGCTGTATCTGGATTGAATATGTCT
CCTACTTTGTAAGTAGTAGTTGTCATTTTATATTATACCTATTGTATACG
CCTACTAACTAAATATTTATAGCGTATAAGGATTTTTATAAATATATTTC
CAAATTTCAGAAGTAAGGGAAACATTCCGTTTATTACGTTTAAATCTGAG
GGCGACGGAAATCTCCTGGGCTAAAAATGTTTCGATTTATTGGTTTTACT
ATTCATCTTAGTACTATTTATTCACTGATGAAAGAAAATATCTGAAAACT
CCCTTAGTTTTCCAACATTCTTACTTAGTATTTGCATTATCTTCTTTTTT
ACTTAGCTCGCCTCAAGATGATTTGTTAGATGGAGTTTTGAATGAGTAAG
TGTATATTCTTAGTTTTATATTATTCCTCTCAAGGTTCCTCTCCATTAAA
TTTACTAATTTTCACACCCTCAATAAATTTTATACAAAACGAAAGTTTAT
CTATAATGCACCTAAATTTTTGTAAAAACCTTCCCTATAAGTGACAGAAC
TTTCTCAAAGTCGAAAAACTTAACAGAATAGCATATTTTCGACAACAAGC
TCTTGCGTTTCATGAGGATTATAAAAATTTCTCTTTTTTTTAGAATACCA
GACAACGATCATTCTTTCAACGGTCATCATCTGAACAACAACAACAACAA
TCCTTTTTTCCAATCAAATGTAACTGAATATCGCATAACTAAACTGGAGA
AGCAGGTTGAGACGCTGACCCAATTGGTGGCTTTAATGAGTCGAAACCAA
GCTGCTGAACAAAACGTA

Coding sequence (CDS) from alignment at scaffold_513:101213..102280-

>TCONS_00070093 ID=TCONS_00070093|Name=TCONS_00070093|organism=Clytia hemisphaerica|type=CDS|length=1308bp|location=Sequence derived from alignment at scaffold_513:101213..102280- (Clytia hemisphaerica)
AATACCAGACAACGATCATTCTTTCAACGGTCATCATCTGAACAACAACA
ACAACAATCCTTTTTTCCAATCAAATGTAACTGAATATCGCATAACTAAA
CTGGAGAAGCAGGTTGAGACGCTGACCCAATTGGTGGCTTTAATGAGTCG
AAACCAAGCTGCTGAACAAAACGTACTCGCCTCAAGATGATTTGTTAGAT
GGAGTTTTGAATGAATCAAATGAACAAACTCCAGGACCCGGTCATCGTGG
ATCTACCGCTGTATCTGGATTGAATATGTCTCCTACTTTGAAAGCATGGC
AGTCAATATGTATACTCCTGCACCATTAATACCAGACAACGATCATTCTT
TCAACGGTCATCATCTGAACAACAACAACAACAATCCTTTTTTCCAATCA
AATGTAACTGAATATCGCATAACTAAACTGGAGAAGCAGGTTGAGACGCT
GACCCAATTGGTGGCTTTAATGAGTCGAAACCAAGCTGCTGAACAAAACG
TACTCGCCTCAAGATGATTTGTTAGATGGAGTTTTGAATGAATCAAATGA
ACAAACTCCAGGACCCGGTCATCGTGGATCTACCGCTGTATCTGGATTGA
ATATGTCTCCTACTTTGAAAGCATGGCAGTCAATATGTATACTCCTGCAC
CATTAATACCAGACAACGATCATTCTTTCAACGGTCATCATCTGAACAAC
AACAACAACAATCCTTTTTTCCAATCAAATGTAACTGAATATCGCATAAC
TAAACTGGAGAAGCAGGTTGAGACGCTGACCCAATTGGTGGCTTTAATGA
GTCGAAACCAAGCTGCTGAACAAAACGTACTCGCCTCAAGATGATTTGTT
AGATGGAGTTTTGAATGAATCAAATGAACAAACTCCAGGACCCGGTCATC
GTGGATCTACCGCTGTATCTGGATTGAATATGTCTCCTACTTTGAAAGCA
TGGCAGTCAATATGTATACTCCTGCACCATTAATACCAGACAACGATCAT
TCTTTCAACGGTCATCATCTGAACAACAACAACAACAATCCTTTTTTCCA
ATCAAATGTAACTGAATATCGCATAACTAAACTGGAGAAGCAGGTTGAGA
CGCTGACCCAATTGGTGGCTTTAATGAGTCGAAACCAAGCTGCTGAACAA
AACGTACTCGCCTCAAGATGATTTGTTAGATGGAGTTTTGAATGAATCAA
ATGAACAAACTCCAGGACCCGGTCATCGTGGATCTACCGCTGTATCTGGA
TTGAATATGTCTCCTACTTTGAAAGCATGGCAGTCAATATGTATACTCCT
GCACCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043642XLOC_043642Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070093-exon-scaffold_513-1575043694:102242..102280TCONS_00070093-exon-scaffold_513-1575043694:102242..102280Clytia hemisphaericaexon
TCONS_00070093-exon-scaffold_513-1575043694:101973..102047TCONS_00070093-exon-scaffold_513-1575043694:101973..102047Clytia hemisphaericaexon
TCONS_00070093-exon-scaffold_513-1575043694:101636..101674TCONS_00070093-exon-scaffold_513-1575043694:101636..101674Clytia hemisphaericaexon
TCONS_00070093-exon-scaffold_513-1575043694:101213..101387TCONS_00070093-exon-scaffold_513-1575043694:101213..101387Clytia hemisphaericaexon
TCONS_00070093-exon-scaffold_513-1510915933:102242..102280TCONS_00070093-exon-scaffold_513-1510915933:102242..102280Clytia hemisphaericaexon
TCONS_00070093-exon-scaffold_513-1510915933:101973..102047TCONS_00070093-exon-scaffold_513-1510915933:101973..102047Clytia hemisphaericaexon
TCONS_00070093-exon-scaffold_513-1510915933:101636..101674TCONS_00070093-exon-scaffold_513-1510915933:101636..101674Clytia hemisphaericaexon
TCONS_00070093-exon-scaffold_513-1510915933:101213..101387TCONS_00070093-exon-scaffold_513-1510915933:101213..101387Clytia hemisphaericaexon
TCONS_00070093-exon-scaffold_513-1491911889:102242..102280TCONS_00070093-exon-scaffold_513-1491911889:102242..102280Clytia hemisphaericaexon
TCONS_00070093-exon-scaffold_513-1491911889:101973..102047TCONS_00070093-exon-scaffold_513-1491911889:101973..102047Clytia hemisphaericaexon
TCONS_00070093-exon-scaffold_513-1491911889:101636..101674TCONS_00070093-exon-scaffold_513-1491911889:101636..101674Clytia hemisphaericaexon
TCONS_00070093-exon-scaffold_513-1491911889:101213..101387TCONS_00070093-exon-scaffold_513-1491911889:101213..101387Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070093-proteinTCONS_00070093-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:101213..102280 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.29812	0	0	0	0	0	0	0	0.50244	0.311177	0	0.397093	0.19827	0	0.169282	0	0.223798	0	0	0	0	0	0	0.310763	0	0.571324	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070093 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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