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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070092 ID=TCONS_00070092|Name=TCONS_00070092|organism=Clytia hemisphaerica|type=transcript|length=549bp
gcgcgttagaaatatgagggcgcgtgggcgcgtaaggcgcgtcatttagc
agactcgccAAAATTGATTCACAAATGTAAATACTACGCAAGAGTTTTTC
TATACACAAAGAGATTGTGAGATCAGGTCAACATTTCCCAAAGAGACCTC
ACCACCACCTCATAATAGAAGCGAATTTTGACGGTGAAATCCTTAATACT
GATTCTGTCAAACATTCGGACAGCCCAAAATTCAATACAGAATTAGCCTG
GGAGATTGACAAAAAATCTTTGCACCAACATAAGCTTCAGCGAACCCCAA
TCAAGATACAGGTTTGCTTTTTCAAACAActagaagaaaattttttctta
aatactatttttatcattgttttattGCTTCAAGCCTGAAAACACACTTT
TGGGAGATTAGTATTCAATATTGATACTTTATTGTCTATAATAAAGTTTG
TGTTAAAAAGGTGTTAGCGTTTTTATTTTTGCGATAACTTTCCAAGCATT
TGCCGTATGTTAAATAggttggtatcgttggaaagatatttaaaaGTGC Run BLAST on NCBI transcript from alignment at scaffold_513:68331..71358- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070092 ID=TCONS_00070092|Name=TCONS_00070092|organism=Clytia hemisphaerica|type=transcript|length=3028bp|location=Sequence derived from alignment at scaffold_513:68331..71358- (Clytia hemisphaerica)
GCGCGTTAGAAATATGAGGGCGCGTGGGCGCGTAAGGCGCGTCATTTAGC
AGACTCGCCAAAATTGATTCACAAATGTAAATACTACGCAAGAGTTTTTC
TATACACAAAGAGATTGTGAGATCAGGTGAGATGAGAAGATATAAACAGT
TCTTTTTTGTTTTCCTGTGTTCTTTGTGTTTCATCAAGAGCAGATGAACA
AAATAACAAATAGTAAATAAAGCATAAAACATTTTTTGAAAAAAATAACA
TCACATTACAAAATTCCTGTATATACATTTGGATTTTGAAAACTATAAAG
TATTTACAAATTCTTAATGGCTTCACTTTTATCAAGAGTGATGCAAAAGT
ATTTGAATAATATGACCTCCTCTTTGAAATTGCCTTCCAAAATATTTCTT
TCCATTCAAAAAAAAATTCTCAATTAAAGCATCCTCAGAATTTTTCACAC
AGTAGCACTTCATAGGGAAAACTGTTGGTGAAAAAATACTTCCTTTTTTT
AGCAGAAAATGTTTTTAATATCGTAAAATTTTATCATTGAGTATTATGTA
TTTATCGTTACTTCATACAACATCCGTCACAATATTCCACATTCACTCAA
GTTAACAACGTAAAAAAAATGTAAACAGTTCTTCTTACAGCAGCATATCC
ATACCACTGTAAAAAAAATGCAGCTATGTCCATCCATCACGAAACAAACT
GGTACATGAAAAATACGTTCAACTGTACTCAAATCATAGCATGTACGAGG
ACTTTCAAAAAGGGTGCATAGATATTTAGCTTCAGAGTCGAACCATGCCA
GAAGCACAAGAAGACAAAGTCCCTTGATCGATGGTTTGATCTTAATTTTC
AATGATAGTCACAGGATTTTAAATTTAATCAAATCAATGTGTCTTATACT
GCTACTTCCTCAACATTATTTCATAAAATTCCAAATCAGTACAATATGAT
GCTCAGAACCAGACAGAGTCTTTTATGGCGCGCGAAAGCGCTATAAAATA
CTATCGTTTTTATAATACTATCTTTTCAAAAATAATACTATCTTTTCTAA
TATAATACTATCTTTTCTAATAAATAATACTATCTTCTTCTGATAAATAA
TACTATCTTTTCAAATATATAATACTCGTAAAAGTCGAGTTAATAAGTTT
GAGTTGAAAAACTCGAGTTCGAGTTATAAGCTGCATGTATTTTGTGACGT
CACAAATATACCATTTTAACGTCATCTTACAATTTCCCATCTCGAAAATG
TAAGTTAAAGACAAATTGACGGGTTAAAAAGGAGGTCTGACTGCCGTGTC
AAAAATGTGATGATGTTGCAAAACGTTTACAGTTTTTTATATCATTAAAC
AAAAGAATAACAAAGAATTCACGCGTAATAAAACGCGCGCAACGTCAGTT
GATTCTCAGGGCGATTTTGAAAATTGGACCATCTAGATGATCTAAAAACG
CATCAAAATAGCTTAATAGTTGTGATATAGGAAGAAAAAAATATTATTAA
ATTCGGTTTTTCCAGAAAACAACTTTTGAAAGAATTATTGGGGGAGCATT
GCCCCCCCCTTGCCCCCCGGTTGCTACGGCACTGCTCTCAACTTAGGCTG
CACGCATCCCCAGAATTTATTTTGTTATAGGGGATGCGTATCGTGTATGA
AATTCTCGTCCGAGAGTTACCTCAAATTTGGGGTAACCGAAAGTTGCATA
AATTTACATAATTTTGTTACATCCAATCACAGAAAGAGAAAAATGACGTC
ATTGTGTTATTGCTTTCATAATTAGAAATTTTCATTCATTAAACAAAGAA
AAAGGAAAGTCGTTGTACAGCTGTGACACATAATCAAAAAAGAGAAAAGA
AAAGACGGGGGTAAGCTGGGACAGGAATATCTTAGACGATACGCATCCCC
TATATCAAATCATATCAGAGGGGATGCGTGCAGCCTATTAAGGCGGTAGG
GCGGCTTTTCTTTCGTCGTCGTGATTTTACCGATTTACTTAACCTCATAA
TGATAGTTCAATAATAATATGACCTATTTCAGTTAATATTAACACTGCTC
AGCCACAAAATGATCAATGAAGATCTCGTAAAGATTGCAGTTTTTCTCAA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGT
TCGGTTTTCTCGCGCCCTTGACGGGAAATACTCACTCGGGTAGTTTTACT
TTTTGCGGGAAAAACATGAGCGAGTTTCTTTGCTGTCGAGTTCAACTGTA
GCCAATACACTATTCCTTTAAGTTTACAATTAGTGTCATTTAGTTTTTGC
TGGCTGATAGAATGGCAGGATCCTGGATGGCTTCCCTAACTGGAATTGCT
TTCCTCATATTTTTTTGCAAAACTTTTCAAATTTGAACCCTGTCCTGCTT
CATCATCATGGATTGCTTGAATATTTTGGAGTAAACCGCTCATTTTGCTT
TACAGGTCAACATTTCCCAAAGAGACCTCACCACCACCTCATAATAGAAG
CGAATTTTGACGGTGAAATCCTTAATACTGATTCTGTCAAACATTCGGAC
AGCCCAAAATTCAATACAGAATTAGCCTGGGAGATTGACAAAAAATCTTT
GCACCAACATAAGCTTCAGCGAACCCCAATCAAGATACAGGTTTGCTTTT
TCAAACAACTAGAAGAAAATTTTTTCTTAAATACTATTTTTATCATTGTT
TTATTGCTTCAAGCCTGAAAACACACTTTTGGGAGATTAGTATTCAATAT
TGATACTTTATTGTCTATAATAAAGTTTGTGTTAAAAAGGTGTTAGCGTT
TTTATTTTTGCGATAACTTTCCAAGCATTTGCCGTATGTTAAATAGGTTG
GTATCGTTGGAAAGATATTTAAAAGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070092-exon-scaffold_513-1575043694:71233..71358 | TCONS_00070092-exon-scaffold_513-1575043694:71233..71358 | Clytia hemisphaerica | exon |
| TCONS_00070092-exon-scaffold_513-1575043694:68331..68753 | TCONS_00070092-exon-scaffold_513-1575043694:68331..68753 | Clytia hemisphaerica | exon |
| TCONS_00070092-exon-scaffold_513-1510915933:71233..71358 | TCONS_00070092-exon-scaffold_513-1510915933:71233..71358 | Clytia hemisphaerica | exon |
| TCONS_00070092-exon-scaffold_513-1510915933:68331..68753 | TCONS_00070092-exon-scaffold_513-1510915933:68331..68753 | Clytia hemisphaerica | exon |
| TCONS_00070092-exon-scaffold_513-1491911889:71233..71358 | TCONS_00070092-exon-scaffold_513-1491911889:71233..71358 | Clytia hemisphaerica | exon |
| TCONS_00070092-exon-scaffold_513-1491911889:68331..68753 | TCONS_00070092-exon-scaffold_513-1491911889:68331..68753 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_513 | supercontig | scaffold_513:68331..71358 - |
Blast
BLAST of TCONS_00070092 vs. Swiss-Prot (Human)
Match: CE120 (Centrosomal protein of 120 kDa OS=Homo sapiens GN=CEP120 PE=1 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 8.217e-26 Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 3
Query: 117 VRSGQHFPKRPHHHLIIEANFDGEILNTDSVKHSDSPKFNTELAWEIDKKSLHQHKLQRTPIKIQVCF 320
+ G+HFPKRP H L++EA FDGE L TD V H+D P+F TELAWEID+K+LHQH+LQRTPIK+Q CF
Sbjct: 14 ILEGRHFPKRPKHMLVVEAKFDGEQLATDPVDHTDQPEFATELAWEIDRKALHQHRLQRTPIKLQ-CF 80
The following BLAST results are available for this feature:
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