TCONS_00070086 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070086
Unique NameTCONS_00070086
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length839

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070086 ID=TCONS_00070086|Name=TCONS_00070086|organism=Clytia hemisphaerica|type=transcript|length=839bp
TACagaataatataataaaaaacaaataagaAAAATGTCATCTTCCAAAC
GAAAattgaaagtgaagaagaatTCGTCCAACGAGGAAAACGTCAAAAAA
CAGATTATGGATCTCAAAGAAGTTTTATCTCCACTATCCTACCCTGATGA
TGTGACAGAAAAGATCACTTCTGCTTTCAGgGACAAAACAGACTACGAAA
ATGATGACGTCACATTCTGCACAAGGCCTTTTCCACATTGGACAATCAAG
AATTTTGTGAAAGATCTGGAGCTtttgaaagaattgaaaaacGATTTATT
AAAGTTGAAATTCAAACACAAATATACTGACTTGTTCAAGTTTTCACAGA
GTGAAGatatcaaaaatcgaaaaacacATTCCATATCAACTTTCAGGGAC
TGTTTGTTTACACAATTTCGAGGATGGTTAGAAAATGTTTTGGATAGGAA
AATGTCGGATGCGATAGATATGTCGTGCGCTCAATATAATTATACAGatt
tcttACTGTGTCACGACGATAAAGTTGAAGATCGACAAATTGCGTTCATT
TTTTATATGGTGCCCGATGATTGGTCCAATGAAGACGGGGGAAGATTGGA
TCTATTCAACAATAAAGatGGTCAACCTTCAGATTTACACAAATCACTGA
TTCCATCTTTTAACTCTTTGGTATTTTTCGAAGTCAGCGATACATCCTTT
CACCAGGTCTCCGAAGTGTTATCGAACTCGAAGACACGTCTCTCCATCTC
GGGATGGTTTCATTCGACCACTGATCCGcattttaaacttttcaaacaCG
TTGAAACAATCACAAAAACACCGCCACTAGATTTAGAGG
Run BLAST on NCBI

protein sequence of TCONS_00070086-protein

>TCONS_00070086-protein ID=TCONS_00070086-protein|Name=TCONS_00070086-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MSSSKRKLKVKKNSSNEENVKKQIMDLKEVLSPLSYPDDVTEKITSAFRD
KTDYENDDVTFCTRPFPHWTIKNFVKDLELLKELKNDLLKLKFKHKYTDL
FKFSQSEDIKNRKTHSISTFRDCLFTQFRGWLENVLDRKMSDAIDMSCAQ
YNYTDFLLCHDDKVEDRQIAFIFYMVPDDWSNEDGGRLDLFNNKDGQPSD
LHKSLIPSFNSLVFFEVSDTSFHQVSEVLSNSKTRLSISGWFHSTTDPHF
KLFKHVETITKTPPLDLE
Run BLAST on NCBI

transcript from alignment at scaffold_513:4983..11529-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070086 ID=TCONS_00070086|Name=TCONS_00070086|organism=Clytia hemisphaerica|type=transcript|length=6547bp|location=Sequence derived from alignment at scaffold_513:4983..11529- (Clytia hemisphaerica)
TACAGAATAATATAATAAAAAACAAATAAGAAAAATGTCATCTTCCAAAC
GAAAATTGAAAGTGAAGAAGAATTCGTCCAACGAGGAAAACGTCAAAAAA
CAGATTATGGATCTCAAAGAAGTTTTATCTCCACTATCCTACCCTGATGA
TGTGACAGAAAAGATCACTTCTGCTTTCAGGTGAGAGACTTTTATATTTT
TTTACTCGGAAACTTCCGCAAATTTGAGAGACCACCAATTCTTTTTGTCA
ATTCTACACTCTATCAGGAGCATAATTTTTAATTTTGCGCTGATCTAAGA
GTACGAAAAACCTGTTTAAGGCCTTTTCTGAATTCAGATGCTGATCTAGA
AACTGTCTTTAGAACTATTCAAAGTTATAATTACCTTATGTCTATGCGGC
TAGGCAAGCCTGCCTTTTTTCGAGCAAATAAGTTTGAATAAATGTTTCAT
TCAAACCTTTAAGGTGTATGTACATTAATTTGGCTTAGGGCGTGGCGCTG
ATATTGTTTGATACATATTTCTTTATAAGAACAAATTATATAGGAACATA
AGGCTTTGATGACCAAAGTATTAAGATCATTTTAAGGCTTTGCGGACCCT
AAACAGCCGATTTCATTGCAAAATTAGAATAGGTTTAAATTTTAAATAGT
TCAGAACATCCTGAGGCTGCAAATAGTTAGGGTGTTCTTATATTAAAAAA
CGTTTAATGACTGCCTGCAATTTTTTCTTCTTAGGGACAAAACAGACTAC
GAAAATGGTAGGATTTAAATCTTTGCAACAATGAATAATAAGTGGACGTT
AATGTCACAAGTAAGGTTTCCTGAGACCAAAAGAAGAAAAAGAATCTCAT
GCTTTTCATGTTTCGAACAATCAGGGTGAGGTCTTTTTCAATCGATTTTT
GGTGGGTTTTAGTCATCGCATCGCAAATAAATTTAGACAAGTTTTTCGTG
ACACCCTGGACCCCTTTTGTTGTTGTACTACTAACTCAGTTGAAATACTA
GCACTTTTTTCTGAACTACTTTACACATTCGTATGTGGACAAGCTTCAAA
TCTTAGGTATTGCTTATGAACAGTTTGTGTAGCTTTTGAACCTCGATAAG
CAATTTGATCTACTTAACTGTGATGAATTAAATATAGAAGAGAGAGAAGT
TTAATATCCCAAGGGGGAGAAATCTTAGTGCAAATTCTGACCAATAAAAA
ATGTGCTGCTGAAAGGACTAGATTGATCAAATGGGCTTTTCCAGAAAAAA
TTTGAATATGGGGGGTGGAGGATATAACATTCTTTGGAAATTTACCCCCC
GGATATTGTGACTTTTGACCCCCCCCCAGACAGCAGGGCTAACCCCCTGG
ACAAGCATCAGTTGACTCCATGGACAATCAAAATTACCCTCAAACAGAGA
AAGATTACCCCCTGGACAATGCAAATCTTGTAGATTTTTCACTACCCCCC
GGCCCGGGCATTATATCCTCCATACCCCCCCCCCATGTACGGACATTTTC
GGGAAGAGCCGAATGCTACCATTCATAACGAACCTATCATGTTATGAAAA
TAATGATCAGAAATAAATTTTGACGCTTTATGTTATTCTTATTTGATAGG
GCTTTTCATAAATTATTTTGAGTGCAACGACTGTCTCGTTTTAAAACTAT
TACCAAGGTGATTAAATCCCACAAGTCTTCTTAAGTGTTACTTTTAGAAA
TAGAGTAAATTTCTTACGAACTCCTTTGGGATTTGATTACTATATGCGTA
CAAACTTTCGCGAGCAGAAAATTCGCGATTTTCGCGAATTTTAGCCCTTT
TCGCGAAAGTAAATGTCTTTAAAAATTCTAGGAAGGGTCATTCGCGAAAG
TTTATGCTCGCGAAAAATTCTTGACAAAATAGAAAATCTGTAAAACTTTG
AATAAAATGTAACTTTTATGGCACTTTTTAGCCTGCTAAATGACTAAATG
ACTAGTAAGTCAAAGGACAAATGTTTCAAGCCAATCCAAGAAGTATTTGT
CCCTCTAAGCCAATTTTTCATGTGAAAATTCTTAATTTTATGTCTTGATT
TGCAAAAGTTTGTGCACGCGAAAAATATTTTTTCGTTAAATTTGCGAAAG
TAAATGTCGTGGATTTCGCGATTTTTCGTCCTCGCGAAAGTTTCTGCTCG
TGAAAGTTTGTACGCCTAAAGTAACTGAAATTTTTCGTTCACACTGTAGT
GGCTGCAGCACTACAGAAACAAATTTGCCAGGATGAGATGGTGGGTGACT
CTAGAGTGGCAAGGAGAGCTTACTCCAGGATCCGCACCTGTCTCCAGGCA
CCCCCTTGGTGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAAGATCTT
CTGCTACAGCAGTCTTCATTGCATAAAATCTGCAATTCTAGTCTATTTTC
ACCCCAAAGACATTCTACCAGAATTTTTCTCCCACAGCTCTATTCAATTG
CACAGTCTTGGGGCGCTCAAGTCTACCAAATAAATATGCAAATATTGTGC
ATACTCCACCTCCAAAGCACAGAAAGTTCTTTTCTTATTTTAATTTTCAA
TTTTTCACACAGACTCTACATATTCTCACCTTTAACTCTCTTGGCCTTGG
GATTTTTCCAAAAGCCGATCAAAATAAACAATTTTACATACTCCACAAAA
TACTTCACTTACAAAACATCCTCATTGATATAACTTTGAAACATATTATA
TTCAACAAACTTTGAAACCTCAACAATTCTGGTTATTTTCCGTATTTGCA
CCTAAATTTCAAAAAACCTTTTTAATTTTATCCCTTCTCCGAATGTCACT
TCCTAGGGAGGGTACCCATCTTTCCATATTCACACATCCACAAGCAGCAT
TAGGATAACGATCGCAAATTTCCCGAAATATCACACCATTCTCTATCCCT
TTGGGAGCAATCCTGAAGTGATGGTCCATGATGGGATATTTTATAAAAAA
ACGTGAAAGTTTGTACGCCTAAAGTACCATAAGCAAACCTTCAAAACGAG
GTAAGCGTTGGTCGTGACGTAATTTACGAAAAGATCTATTAAGCCCTTGT
TTTCCATTTAGATGACGTCACATTCTGCACAAGGCCTTTTCCACATTGGA
CAATCAAGAATTTTGTGAAAGATCTGGAGCTTTTGAAAGAATTGAAAAAC
GATTTATTAAAGTTGAAATTCAAACACAAATATACTGACTTGTTCAAGTT
TTCACAGGTAAAACACGCAACGTTTTTGTGAGCAGTGCTAGCCCTTCACC
AGGCGTTTCAATGAAGTTCATCTTTTATTGATAAATTTGGGTATTTTAAC
GTTTTTCAGAATTTAATTCCAATACTTCCATTTTATTTCATTGGATATTT
TCGATTTTGGAGAGATTCAGTGGTTAGGCTATATTCTCTCAGCCTTATTG
GAACACTTTTGAGCTTTCGGATCCTGAGATCTGACTGTGTCCCATATTAT
AACTCAGAGTCAAAACATTGCATTCCAGTAGTAACTTAGAGCGCTTAGCA
CCTTAAAATCATTTGTATTGTTTTGTAGGGATTCCCCCTTATTATCAAAT
ATAATACGATTTTCATTTTAGACATAAAAACATCCGAAGCCCTCCATCCA
TCTTAGTGTATTCATGATATGCACCACTGCAATGACTTCACGAAATGATG
CAACTTTTCTGTTTTTGTTCCACCCAATACGTCACTTTTTCTATTGTTTA
AGTGATGTATTGGGTGGAAAATTATCTGGAAAGTTCTCGGAAGACTCTCC
AGTGGTGCATATCATGAATACACTAAGATGGATGGAGGACGATACGTCTG
GTGACCTTGGACAGGAATCTACACCTTCTTTTTTCTTTCTGCAGAGTGAA
GATATCAAAAATCGAAAAACACATTCCATATCAACTTTCAGGTTTAATTC
ATTCAAAATTACAACCTTTTTGTCAAGAAATTTCCCGAAATGTTTTCGAC
TTTTTTGTTACAATATTTGAGTGTATTTTTCCGGGGAAAACAGAGGGTAT
GTGATGCCAAAGATAGAATCTTCCATCAAAATCATATACAGTGGAGTCTC
CGTAACTCGAATGTCTCCGTAACTCGAACAAGGTTTCATGGTCCCTTCAA
TTAACAATGCCTTATAAACCTTATTCCATATCTCTTAATTCCCTTAACTC
GAACAAATTTAGGTTCCCCGTTCTTTTTCGAGTTATAGAGACTCCATTGG
ATTTCTATGACAAGTTCTATGACAAAAAAGTTACATTATTTAGAGTTTCA
TACTCCCAGAAATTGTTAGATGGTGAACAGGTTATTTCTTCAATAATCCA
AACCAATTTTTATATAGATTTAGTACAATTCATATTTTTTAAAGTTACAA
TTTACAAAGAACTTTCAGTGCAGTATAAAGAGAGGTATTTTCCGTCTCCA
AATTCAACAAAATTCTGCAAAATTTGAAGAATCTTGCTAATTTGCAAGTC
AATTTTCGGCTGATACAAAAAACTTTACTTTGACCTCACGTAAAGTAGAG
ATATTCGTTCAATTGAACATTCTTCTTATAGGGACTGTTTGTTTACACAA
TTTCGAGGATGGTTAGAAAATGTTTTGGATAGGAAAATGTCGGATGCGAT
AGATATGTCGTGCGCTCAATATAATTATACAGGTACGATTCAACTTTCCA
TGAAAATCTAAGTAAAAGTAATAGTAATAACCTCGTTAATTTCCACTTGG
GTTGGGGCACTCAAGGCATGGATTTAAAACAACTATAAGGTACGATTTAA
CTTTTCCATGAAATTACAAGTGTATATTTTGTCCCGAAATCAACCTGGGA
GTTTTGCCTTTAAAAAAACAAATAGTAATTCTCAAGATAAGCAATGTTCC
GTAAGTGCAAAATGAGAAAAAATGAAAAAAAAGTGCACAGGGTTTAAAGA
GTGAGCAAAATTTTAGAAAGATCTAACCAATTTGTGCCTTACAATGGACC
AAAACTTTCAAGCACTGCTATGCAAATTTACTAGAATTTGGCTAAATTTT
GTTTGCGTTGTAAGGGTCCAGTTTTGAGACCCTAATTTTTGTCCTCGGTA
TTTTTTTACTACAGCAACAGAAACATTTTTTTTCAGATTTCTTACTGTGT
CACGACGATAAAGTTGAAGATCGACAAATTGCGTTCATTTTTTATATGGT
GCCCGATGATTGGTCCAATGAAGACGGGGGTATGTTGTTTTATTAATTTG
AAAGCTTTTTGATATTGAATTGACACGGATGTGGAGCAAGATTGGTCAGA
AAGAGGAAAAGAAAAACTTTTTTTGCTTATATCAGCACAATATAACAATA
GGGCGACACTGCCCTGATATGAAACGGGAACACTTTTTATGTGAAAATAA
AACTTTTACTGAATGCATGTCTTATTGCATATTTCTCGTCATTCCCACGT
GGTTCTTGATTTTGTTGATCCGAACCATGATGCGAAATGGTTTTAAAGCA
ACCCACGTATAGAAACCCCCTTTTGAAGTGAAACTGTGGGTGTGATTTTG
TATAATGATTGATTTCGTTTTTTCAGGAAGATTGGATCTATTCAACAATA
AAGGTATATATCATTTCAGCTCCTACATACTAGCTTTTGAGAAATTACTC
CATTTTATTGTTACCCTAATTTCAAATCTTACTTTGAAAAGTTCTTTACT
CTAGTTTATTGATACCCTCATAAATCTTCATTTTCAATACAGTTTTCAAA
GATTTTTCGTAAAACTTTTTCAACAACATTCTTATATTGTTACTTTCAGA
ACTAAAGTGGGTCATGTCTGGCCAGTGTTTTACGAGTAATTCAGTTTTGC
ACGGTGTCATGTTTTGTTTTTTCAGATGGTCAACCTTCAGATTTACACAA
ATCACTGATTCCATCTTTTAACTCTTTGGTATTTTTCGAAGTCAGCGATA
CATCCTTTCACCAGGTGAGAAGGTTCTTTCTGACCTCTCTTGGCCTGGTT
CCTCTCTCGCCCTGGTTTCGCCAATCTCTAAATTTGATTAATGTTCCAGC
GCCTGGCATCACCTGTATGATGAACTACCTCTTTATGGAACTTTCTACAA
TTACCTTAAAATGAGAAAAATCGGTGGATTTACCTGGTCAAACTCCTACC
AAATTTATTAATTTATCCGTGCTTTTTTAGGCTTTTAGTTTATCTAATAA
CGATTTTCGGCTAAAAATATCCTGCAAACACACGACCAACCATCCGCCGA
ATTAAATTCCTGCCCAGATTTCTTCCTTTCAGGTAAAAGATGTACCAACT
TTGACTCTCCTTAGGTCTCCGAAGTGTTATCGAACTCGAAGACACGTCTC
TCCATCTCGGGATGGTTTCATTCGACCACTGATCCGCATTTTAAACTTTT
CAAACACGTTGAAACAATCACAAAAACACCGCCACTAGATTTAGAGG

Coding sequence (CDS) from alignment at scaffold_513:4983..11529-

>TCONS_00070086 ID=TCONS_00070086|Name=TCONS_00070086|organism=Clytia hemisphaerica|type=CDS|length=7236bp|location=Sequence derived from alignment at scaffold_513:4983..11529- (Clytia hemisphaerica)
GTCTCCGAAGTGTTATCGAACTCGAAGACACGTCTCTCCATCTCGGGATG
GTTTCATTCGACCACTGATCCGCATTTTAAACTTTTCAAACACGTTGAAA
CAATCACAAAAACACCGCCACTAGATTTAGAGATGGTCAACCTTCAGATT
TACACAAATCACTGATTCCATCTTTTAACTCTTTGGTATTTTTCGAAGTC
AGCGATACATCCTTTCACCAGGAAGATTGGATCTATTCAACAATAAAGAT
TTCTTACTGTGTCACGACGATAAAGTTGAAGATCGACAAATTGCGTTCAT
TTTTTATATGGTGCCCGATGATTGGTCCAATGAAGACGGGGGGACTGTTT
GTTTACACAATTTCGAGGATGGTTAGAAAATGTTTTGGATAGGAAAATGT
CGGATGCGATAGATATGTCGTGCGCTCAATATAATTATACAGAGTGAAGA
TATCAAAAATCGAAAAACACATTCCATATCAACTTTCAGATGACGTCACA
TTCTGCACAAGGCCTTTTCCACATTGGACAATCAAGAATTTTGTGAAAGA
TCTGGAGCTTTTGAAAGAATTGAAAAACGATTTATTAAAGTTGAAATTCA
AACACAAATATACTGACTTGTTCAAGTTTTCACAGGGACAAAACAGACTA
CGAAAATGATGTCATCTTCCAAACGAAAATTGAAAGTGAAGAAGAATTCG
TCCAACGAGGAAAACGTCAAAAAACAGATTATGGATCTCAAAGAAGTTTT
ATCTCCACTATCCTACCCTGATGATGTGACAGAAAAGATCACTTCTGCTT
TCAGGTCTCCGAAGTGTTATCGAACTCGAAGACACGTCTCTCCATCTCGG
GATGGTTTCATTCGACCACTGATCCGCATTTTAAACTTTTCAAACACGTT
GAAACAATCACAAAAACACCGCCACTAGATTTAGAGATGGTCAACCTTCA
GATTTACACAAATCACTGATTCCATCTTTTAACTCTTTGGTATTTTTCGA
AGTCAGCGATACATCCTTTCACCAGGAAGATTGGATCTATTCAACAATAA
AGATTTCTTACTGTGTCACGACGATAAAGTTGAAGATCGACAAATTGCGT
TCATTTTTTATATGGTGCCCGATGATTGGTCCAATGAAGACGGGGGGACT
GTTTGTTTACACAATTTCGAGGATGGTTAGAAAATGTTTTGGATAGGAAA
ATGTCGGATGCGATAGATATGTCGTGCGCTCAATATAATTATACAGAGTG
AAGATATCAAAAATCGAAAAACACATTCCATATCAACTTTCAGATGACGT
CACATTCTGCACAAGGCCTTTTCCACATTGGACAATCAAGAATTTTGTGA
AAGATCTGGAGCTTTTGAAAGAATTGAAAAACGATTTATTAAAGTTGAAA
TTCAAACACAAATATACTGACTTGTTCAAGTTTTCACAGGGACAAAACAG
ACTACGAAAATGATGTCATCTTCCAAACGAAAATTGAAAGTGAAGAAGAA
TTCGTCCAACGAGGAAAACGTCAAAAAACAGATTATGGATCTCAAAGAAG
TTTTATCTCCACTATCCTACCCTGATGATGTGACAGAAAAGATCACTTCT
GCTTTCAGGTCTCCGAAGTGTTATCGAACTCGAAGACACGTCTCTCCATC
TCGGGATGGTTTCATTCGACCACTGATCCGCATTTTAAACTTTTCAAACA
CGTTGAAACAATCACAAAAACACCGCCACTAGATTTAGAGATGGTCAACC
TTCAGATTTACACAAATCACTGATTCCATCTTTTAACTCTTTGGTATTTT
TCGAAGTCAGCGATACATCCTTTCACCAGGAAGATTGGATCTATTCAACA
ATAAAGATTTCTTACTGTGTCACGACGATAAAGTTGAAGATCGACAAATT
GCGTTCATTTTTTATATGGTGCCCGATGATTGGTCCAATGAAGACGGGGG
GACTGTTTGTTTACACAATTTCGAGGATGGTTAGAAAATGTTTTGGATAG
GAAAATGTCGGATGCGATAGATATGTCGTGCGCTCAATATAATTATACAG
AGTGAAGATATCAAAAATCGAAAAACACATTCCATATCAACTTTCAGATG
ACGTCACATTCTGCACAAGGCCTTTTCCACATTGGACAATCAAGAATTTT
GTGAAAGATCTGGAGCTTTTGAAAGAATTGAAAAACGATTTATTAAAGTT
GAAATTCAAACACAAATATACTGACTTGTTCAAGTTTTCACAGGGACAAA
ACAGACTACGAAAATGATGTCATCTTCCAAACGAAAATTGAAAGTGAAGA
AGAATTCGTCCAACGAGGAAAACGTCAAAAAACAGATTATGGATCTCAAA
GAAGTTTTATCTCCACTATCCTACCCTGATGATGTGACAGAAAAGATCAC
TTCTGCTTTCAGGTCTCCGAAGTGTTATCGAACTCGAAGACACGTCTCTC
CATCTCGGGATGGTTTCATTCGACCACTGATCCGCATTTTAAACTTTTCA
AACACGTTGAAACAATCACAAAAACACCGCCACTAGATTTAGAGATGGTC
AACCTTCAGATTTACACAAATCACTGATTCCATCTTTTAACTCTTTGGTA
TTTTTCGAAGTCAGCGATACATCCTTTCACCAGGAAGATTGGATCTATTC
AACAATAAAGATTTCTTACTGTGTCACGACGATAAAGTTGAAGATCGACA
AATTGCGTTCATTTTTTATATGGTGCCCGATGATTGGTCCAATGAAGACG
GGGGGACTGTTTGTTTACACAATTTCGAGGATGGTTAGAAAATGTTTTGG
ATAGGAAAATGTCGGATGCGATAGATATGTCGTGCGCTCAATATAATTAT
ACAGAGTGAAGATATCAAAAATCGAAAAACACATTCCATATCAACTTTCA
GATGACGTCACATTCTGCACAAGGCCTTTTCCACATTGGACAATCAAGAA
TTTTGTGAAAGATCTGGAGCTTTTGAAAGAATTGAAAAACGATTTATTAA
AGTTGAAATTCAAACACAAATATACTGACTTGTTCAAGTTTTCACAGGGA
CAAAACAGACTACGAAAATGATGTCATCTTCCAAACGAAAATTGAAAGTG
AAGAAGAATTCGTCCAACGAGGAAAACGTCAAAAAACAGATTATGGATCT
CAAAGAAGTTTTATCTCCACTATCCTACCCTGATGATGTGACAGAAAAGA
TCACTTCTGCTTTCAGGTCTCCGAAGTGTTATCGAACTCGAAGACACGTC
TCTCCATCTCGGGATGGTTTCATTCGACCACTGATCCGCATTTTAAACTT
TTCAAACACGTTGAAACAATCACAAAAACACCGCCACTAGATTTAGAGAT
GGTCAACCTTCAGATTTACACAAATCACTGATTCCATCTTTTAACTCTTT
GGTATTTTTCGAAGTCAGCGATACATCCTTTCACCAGGAAGATTGGATCT
ATTCAACAATAAAGATTTCTTACTGTGTCACGACGATAAAGTTGAAGATC
GACAAATTGCGTTCATTTTTTATATGGTGCCCGATGATTGGTCCAATGAA
GACGGGGGGACTGTTTGTTTACACAATTTCGAGGATGGTTAGAAAATGTT
TTGGATAGGAAAATGTCGGATGCGATAGATATGTCGTGCGCTCAATATAA
TTATACAGAGTGAAGATATCAAAAATCGAAAAACACATTCCATATCAACT
TTCAGATGACGTCACATTCTGCACAAGGCCTTTTCCACATTGGACAATCA
AGAATTTTGTGAAAGATCTGGAGCTTTTGAAAGAATTGAAAAACGATTTA
TTAAAGTTGAAATTCAAACACAAATATACTGACTTGTTCAAGTTTTCACA
GGGACAAAACAGACTACGAAAATGATGTCATCTTCCAAACGAAAATTGAA
AGTGAAGAAGAATTCGTCCAACGAGGAAAACGTCAAAAAACAGATTATGG
ATCTCAAAGAAGTTTTATCTCCACTATCCTACCCTGATGATGTGACAGAA
AAGATCACTTCTGCTTTCAGGTCTCCGAAGTGTTATCGAACTCGAAGACA
CGTCTCTCCATCTCGGGATGGTTTCATTCGACCACTGATCCGCATTTTAA
ACTTTTCAAACACGTTGAAACAATCACAAAAACACCGCCACTAGATTTAG
AGATGGTCAACCTTCAGATTTACACAAATCACTGATTCCATCTTTTAACT
CTTTGGTATTTTTCGAAGTCAGCGATACATCCTTTCACCAGGAAGATTGG
ATCTATTCAACAATAAAGATTTCTTACTGTGTCACGACGATAAAGTTGAA
GATCGACAAATTGCGTTCATTTTTTATATGGTGCCCGATGATTGGTCCAA
TGAAGACGGGGGGACTGTTTGTTTACACAATTTCGAGGATGGTTAGAAAA
TGTTTTGGATAGGAAAATGTCGGATGCGATAGATATGTCGTGCGCTCAAT
ATAATTATACAGAGTGAAGATATCAAAAATCGAAAAACACATTCCATATC
AACTTTCAGATGACGTCACATTCTGCACAAGGCCTTTTCCACATTGGACA
ATCAAGAATTTTGTGAAAGATCTGGAGCTTTTGAAAGAATTGAAAAACGA
TTTATTAAAGTTGAAATTCAAACACAAATATACTGACTTGTTCAAGTTTT
CACAGGGACAAAACAGACTACGAAAATGATGTCATCTTCCAAACGAAAAT
TGAAAGTGAAGAAGAATTCGTCCAACGAGGAAAACGTCAAAAAACAGATT
ATGGATCTCAAAGAAGTTTTATCTCCACTATCCTACCCTGATGATGTGAC
AGAAAAGATCACTTCTGCTTTCAGGTCTCCGAAGTGTTATCGAACTCGAA
GACACGTCTCTCCATCTCGGGATGGTTTCATTCGACCACTGATCCGCATT
TTAAACTTTTCAAACACGTTGAAACAATCACAAAAACACCGCCACTAGAT
TTAGAGATGGTCAACCTTCAGATTTACACAAATCACTGATTCCATCTTTT
AACTCTTTGGTATTTTTCGAAGTCAGCGATACATCCTTTCACCAGGAAGA
TTGGATCTATTCAACAATAAAGATTTCTTACTGTGTCACGACGATAAAGT
TGAAGATCGACAAATTGCGTTCATTTTTTATATGGTGCCCGATGATTGGT
CCAATGAAGACGGGGGGACTGTTTGTTTACACAATTTCGAGGATGGTTAG
AAAATGTTTTGGATAGGAAAATGTCGGATGCGATAGATATGTCGTGCGCT
CAATATAATTATACAGAGTGAAGATATCAAAAATCGAAAAACACATTCCA
TATCAACTTTCAGATGACGTCACATTCTGCACAAGGCCTTTTCCACATTG
GACAATCAAGAATTTTGTGAAAGATCTGGAGCTTTTGAAAGAATTGAAAA
ACGATTTATTAAAGTTGAAATTCAAACACAAATATACTGACTTGTTCAAG
TTTTCACAGGGACAAAACAGACTACGAAAATGATGTCATCTTCCAAACGA
AAATTGAAAGTGAAGAAGAATTCGTCCAACGAGGAAAACGTCAAAAAACA
GATTATGGATCTCAAAGAAGTTTTATCTCCACTATCCTACCCTGATGATG
TGACAGAAAAGATCACTTCTGCTTTCAGGTCTCCGAAGTGTTATCGAACT
CGAAGACACGTCTCTCCATCTCGGGATGGTTTCATTCGACCACTGATCCG
CATTTTAAACTTTTCAAACACGTTGAAACAATCACAAAAACACCGCCACT
AGATTTAGAGATGGTCAACCTTCAGATTTACACAAATCACTGATTCCATC
TTTTAACTCTTTGGTATTTTTCGAAGTCAGCGATACATCCTTTCACCAGG
AAGATTGGATCTATTCAACAATAAAGATTTCTTACTGTGTCACGACGATA
AAGTTGAAGATCGACAAATTGCGTTCATTTTTTATATGGTGCCCGATGAT
TGGTCCAATGAAGACGGGGGGACTGTTTGTTTACACAATTTCGAGGATGG
TTAGAAAATGTTTTGGATAGGAAAATGTCGGATGCGATAGATATGTCGTG
CGCTCAATATAATTATACAGAGTGAAGATATCAAAAATCGAAAAACACAT
TCCATATCAACTTTCAGATGACGTCACATTCTGCACAAGGCCTTTTCCAC
ATTGGACAATCAAGAATTTTGTGAAAGATCTGGAGCTTTTGAAAGAATTG
AAAAACGATTTATTAAAGTTGAAATTCAAACACAAATATACTGACTTGTT
CAAGTTTTCACAGGGACAAAACAGACTACGAAAATGATGTCATCTTCCAA
ACGAAAATTGAAAGTGAAGAAGAATTCGTCCAACGAGGAAAACGTCAAAA
AACAGATTATGGATCTCAAAGAAGTTTTATCTCCACTATCCTACCCTGAT
GATGTGACAGAAAAGATCACTTCTGCTTTCAGGTCTCCGAAGTGTTATCG
AACTCGAAGACACGTCTCTCCATCTCGGGATGGTTTCATTCGACCACTGA
TCCGCATTTTAAACTTTTCAAACACGTTGAAACAATCACAAAAACACCGC
CACTAGATTTAGAGATGGTCAACCTTCAGATTTACACAAATCACTGATTC
CATCTTTTAACTCTTTGGTATTTTTCGAAGTCAGCGATACATCCTTTCAC
CAGGAAGATTGGATCTATTCAACAATAAAGATTTCTTACTGTGTCACGAC
GATAAAGTTGAAGATCGACAAATTGCGTTCATTTTTTATATGGTGCCCGA
TGATTGGTCCAATGAAGACGGGGGGACTGTTTGTTTACACAATTTCGAGG
ATGGTTAGAAAATGTTTTGGATAGGAAAATGTCGGATGCGATAGATATGT
CGTGCGCTCAATATAATTATACAGAGTGAAGATATCAAAAATCGAAAAAC
ACATTCCATATCAACTTTCAGATGACGTCACATTCTGCACAAGGCCTTTT
CCACATTGGACAATCAAGAATTTTGTGAAAGATCTGGAGCTTTTGAAAGA
ATTGAAAAACGATTTATTAAAGTTGAAATTCAAACACAAATATACTGACT
TGTTCAAGTTTTCACAGGGACAAAACAGACTACGAAAATGATGTCATCTT
CCAAACGAAAATTGAAAGTGAAGAAGAATTCGTCCAACGAGGAAAACGTC
AAAAAACAGATTATGGATCTCAAAGAAGTTTTATCTCCACTATCCTACCC
TGATGATGTGACAGAAAAGATCACTTCTGCTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043639XLOC_043639Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070086-exon-scaffold_513-1575043694:11350..11529TCONS_00070086-exon-scaffold_513-1575043694:11350..11529Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1575043694:10773..10795TCONS_00070086-exon-scaffold_513-1575043694:10773..10795Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1575043694:8173..8318TCONS_00070086-exon-scaffold_513-1575043694:8173..8318Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1575043694:7489..7535TCONS_00070086-exon-scaffold_513-1575043694:7489..7535Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1575043694:6748..6848TCONS_00070086-exon-scaffold_513-1575043694:6748..6848Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1575043694:6201..6293TCONS_00070086-exon-scaffold_513-1575043694:6201..6293Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1575043694:5827..5853TCONS_00070086-exon-scaffold_513-1575043694:5827..5853Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1575043694:5466..5554TCONS_00070086-exon-scaffold_513-1575043694:5466..5554Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1575043694:4983..5115TCONS_00070086-exon-scaffold_513-1575043694:4983..5115Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1510915933:11350..11529TCONS_00070086-exon-scaffold_513-1510915933:11350..11529Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1510915933:10773..10795TCONS_00070086-exon-scaffold_513-1510915933:10773..10795Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1510915933:8173..8318TCONS_00070086-exon-scaffold_513-1510915933:8173..8318Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1510915933:7489..7535TCONS_00070086-exon-scaffold_513-1510915933:7489..7535Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1510915933:6748..6848TCONS_00070086-exon-scaffold_513-1510915933:6748..6848Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1510915933:6201..6293TCONS_00070086-exon-scaffold_513-1510915933:6201..6293Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1510915933:5827..5853TCONS_00070086-exon-scaffold_513-1510915933:5827..5853Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1510915933:5466..5554TCONS_00070086-exon-scaffold_513-1510915933:5466..5554Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1510915933:4983..5115TCONS_00070086-exon-scaffold_513-1510915933:4983..5115Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1491911889:11350..11529TCONS_00070086-exon-scaffold_513-1491911889:11350..11529Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1491911889:10773..10795TCONS_00070086-exon-scaffold_513-1491911889:10773..10795Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1491911889:8173..8318TCONS_00070086-exon-scaffold_513-1491911889:8173..8318Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1491911889:7489..7535TCONS_00070086-exon-scaffold_513-1491911889:7489..7535Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1491911889:6748..6848TCONS_00070086-exon-scaffold_513-1491911889:6748..6848Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1491911889:6201..6293TCONS_00070086-exon-scaffold_513-1491911889:6201..6293Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1491911889:5827..5853TCONS_00070086-exon-scaffold_513-1491911889:5827..5853Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1491911889:5466..5554TCONS_00070086-exon-scaffold_513-1491911889:5466..5554Clytia hemisphaericaexon
TCONS_00070086-exon-scaffold_513-1491911889:4983..5115TCONS_00070086-exon-scaffold_513-1491911889:4983..5115Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070086-proteinTCONS_00070086-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:4983..11529 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.6926	11.8927	3.36134	2.03221	1.723	1.50446	3.459	3.35343	5.94565	4.3744	7.95826	9.96194	6.91318	9.01717	10.1341	8.92013	8.60396	10.2247	4.42775	2.68827	9.89439	9.98987	16.3431	14.0753	4.31913	10.0405	5.85006	6.22313	9.59677	10.6884
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006620Pro_4_hyd_alph
IPR005123Oxoglu/Fe-dep_dioxygenase
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0031418L-ascorbic acid binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0005506 iron ion binding
molecular_function GO:0031418 L-ascorbic acid binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Blast
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BLAST of TCONS_00070086 vs. Swiss-Prot (Human)
Match: OGFD1 (Prolyl 3-hydroxylase OGFOD1 OS=Homo sapiens GN=OGFOD1 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 4.309e-54
Identity = 108/225 (48.00%), Postives = 146/225 (64.89%), Query Frame = 2 
Query:  116 KEVLSPLSYPDDVTE-----KITSAFRDKTDYENDDVTFCTRPFPHWTIKNFVXXXXXXXXXXXXXXXXXXXXXYTDLFKFSQSEDIKNRKTHSISTFRDCLFTQFRGWLENVLDRKMSDAIDMSCAQYNYTDFLLCHDDKVEDRQIAFIFYMVPDDWSNEDGGRLDLFN-NKDGQPSDLHKSLIPSFNSLVFFEVSDTSFHQVSEVLSNSKTRLSISGWFHSTT 772
            KEV++  S  D VTE     ++  A+  +T + ++ +     PF H  I NF++  + L+ L+ +L+ L F  KY DL+KF QS+D+K R+   IST R  LF  FR WL ++    +   IDMSCA+Y +TD LLCHDD++E R+IAFI Y+VP  W    GG LDL++ ++  QP  + KSLIPS+N LVFFEVS  SFHQVSEVLS  K+RLSISGWFH  +
Sbjct:   20 KEVMAEFS--DAVTEETLKKQVAEAWSRRTPFSHEVIVMDMDPFLHCVIPNFIQSQDFLEGLQKELMNLDFHEKYNDLYKFQQSDDLKKRREPHISTLRKILFEDFRSWLSDISKIDLESTIDMSCAKYEFTDALLCHDDELEGRRIAFILYLVP-PWDRSMGGTLDLYSIDEHFQPKQIVKSLIPSWNKLVFFEVSPVSFHQVSEVLSEEKSRLSISGWFHGPS 241
The following BLAST results are available for this feature:
BLAST of TCONS_00070086 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OGFD14.309e-5448.00Prolyl 3-hydroxylase OGFOD1 OS=Homo sapiens GN=OGF... [more]
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