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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070084 ID=TCONS_00070084|Name=TCONS_00070084|organism=Clytia hemisphaerica|type=transcript|length=1116bp
NNaaaaaaaagatttagaatatatatattatagataaattaatttctttg
ttcttcagACCACAGGTGTTGAATTTGTGACCAAACAATTGAGCATTGCT
TCAACATTGGATAGTGTTGAATTCTTTTTGTATGATTCAGCTGGCAAAGA
AGAATTTGGTGATATTGTTGACGTTCATATGAAAGATGCTAAGATCATTG
TTTTggtttatgacgtcacaaatatAGATTCTTTTGAAAACTTGTCAGAA
TGGTATAAGAAACTAGAGGCTGCCAATAATGGAAAAACTTTACATGGTGC
TATTATAGGTAACAAAGTAGATTTAACAGATCGCCAAGTGGTGACCAGTG
AGATGGGACAAAATTTGGCTGACCAATTACATCTGCATTTCTTTGAATGT
TCTGCTAAAGATATGAGGAATATTGATGCGCCATTTCAAACAATTGCAAA
AGATTATTATGATCGAGTCAATGAAGTACCatcttgatcaaaaataaaat
tgtttaaaaaatctaTCTGTAAATAGAGAAATCGCCCCTTCTCACTGACA
CAGTTGGACCCCTTCCCACTTGgtaaatttgccaaaatattgtccccagt
gGATAATTATAATCCAATTTTTTCCccattgaaaaatctcaaataaacca
atcctcactgcaaaatattatgcttttttcccatccccactagattttct
gacttgaaaacaaaagaatttaaatccccaacCATAAAAGATATGGAAAT
ATAAATCCCCATCAATTTTCAGTCCATAacttttacccccactggtTGAA
AATACCCTACCAGGTCTGCGAGAAGGGGTTCTTTCCAAAGAACAACGGTA
AAAAACGCTGTTTCAATGTTCGCCTAAAGTTCAACAGAACGTTATGGATG
TTGGGAGAGCATTGGATGGATGTATCACAAGTATAAAGTGACATAATTTT
ATGAATGAATTGTAAATATGAACAcgtgttttgtttttatcaatgcTGTT
ACAATGTTACAAGTATTGTAATTATTTATNAAAcacgtgtttttgttttt
atcaatgaTGTTACAATGTTACAAGTATTGTAAATATTTATGAAGAAAAG
ATTTTAACTTCCTTAA Run BLAST on NCBI transcript from alignment at scaffold_513:603137..608978+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070084 ID=TCONS_00070084|Name=TCONS_00070084|organism=Clytia hemisphaerica|type=transcript|length=5842bp|location=Sequence derived from alignment at scaffold_513:603137..608978+ (Clytia hemisphaerica)
NNaaaaaaaagatttagaatatatatattatagataaattaatttctttg
ttcttcagACCACAGGTGTTGAATTTGTGACCAAACAATTGAGCATTGCT
TCAACATTGGATAGTGTTGAATTCTTTTTGTATGATTCAGCTGGCAAAGA
AGAATTTGGTGATATTGTTGACGTTCATGTATGTAATGTAATATATAATT
gcccaaatttgaaccaaaaagCAATTACTTGAATTGCAAatctaaaaaaa
agtaaaaggaaATTTGTCcctgttacacgttttttataagaacatccaaa
atatttgaagccttcggatgtttttaacatgctcttattttcaccatttt
tttagcattttcgtccatttttctaaaaaattgggtattttagagtcTGC
ACAACCTTAAAAtgtcttaacttgttcttaacattttggtcatcaaagcc
ttatgattttatatagtttgttcttataaaaaaacatatatttgATTGCA
AATACCTTGCTCATCTTCTTCAGATGAAAGATGCTAAGATCATTGTTTTg
gtttatgacgtcacaaatatAGATTCTTTTGAAAACTTGTCAGAATGGTA
TAAGAAACTAGAGGCTGCCAATAATGGAAAAACTTTACATGGTAAGagaa
ttctttttcattttatcattaCCTTCTTAAATATCAGACGAATAGGACAT
TTTTCGATAAACAGTTAATTTCTAGGTAAATTTAGGCTCTGTTCTGAATT
TAAGTCCGTCCGGCTTTAACtggatatttgttttttttacaagcaCTTTA
TTTTCATGTTTGTTTTGTCAAAAAGAAATGGTTTGTACTTTTAAAGAAAG
ACATTATAGCTACTATTATCTAAAAGAAACTGgacgaaatataaataaag
TCGTTGATACACTTTAATTGTTATAAAACGTCAAAATCCCTTCAACTTTA
ATGTCTTCCACTGACCCAACAGCTggttggttgaaagtgacgtaaaatca
atcaatacgtcacttacaaccaatccaCTGTTAGGTCCATGTTGTAATGT
aagaagacattgtaatggtgcatatcatgaataggaaaataaacattttt
gtttcttcttcatccTCAGGTGCTATTATAGGTAACAAAGTAGATTTAAC
AGATCGCCAAGTGGTGACCAGTGAGATGGGACAAAATTTGGCTGACCAAT
TACATCTGCATTTCTTTGAATGTTCTGCTGTAAGAATTTtttcttgttta
ctttttaatcggattaaatttgcaagattaaatttcgcgaaattttctgg
atttaattttgcaagtcacagttttgagaaattttgcgtggatttaattt
cgcgactaagccagaaaacagctgaaaaaaagccatttttgccacaaatg
gTTTTCCGCCGAAAATGCAATTTATTAATCCTATTAAAGTATTTTCCTAT
TTTCGATAAAAACTGTTCTTTTATATAATATGGGCTATTCGGTGGTTCCC
AGGGAAATCTCGTAATTTTGATGGTATTAATTTGCTCTCGGGAAAATTCG
TACTTTTCTATGCAGTTCCCGAAAGGCGGTTGGGTTCAGGGTGACTCCAC
CATTCTGTCAATTTTTCCCCAGTATCCGTCACATCCAGCGTCAAAACGCG
AGTTTTTCGCCTAAAATTCCATagtagtccgggagccaaatcctatatct
ccttaaataagcacttttgcttaacccaagattctacagaataaactata
catttttagaatcctcaactatcctagttttggaaatggtcggtccccaa
agctaactcctggtcaatttttcatactgggNTTTTTTTaaagggaactt
attttagcggtcataaaatgggggaatttatttttgacggatttgtccta
ttttggacacatttctttcatttctgtaggaattttttaaatttctatta
TGAAAAATAGCTAAATTTTGTAGTTCGGTTCTAATTTTAGGTTTCAGTTC
TAACTCAAACTGCGAAATAAAAGTAAAacttagttcccttaaggtatttt
aaTTTGGTGTAACCCTGCACTCCTATTATCCAGATTTAAAACAGTCAAGA
GAAGttgggaaaattttctaatattGCTTTAGGGGATTGTAATCCAAATA
CTCAAAATTAATGAAATAAATGATTGTGATACTGTTTAGAGCAAATTAAT
GGACTTGTGTTTTGGTCAGCTGCCaatatattcaaaatttaataaacatg
GTGGACCcaataagataaaaaaaaagatttagaatatatatattatagat
aaattaatttctttgttcttcagACCACAGGTGTTGAATTTGTGACCAAA
CAATTGAGCATTGCTTCAACATTGGATAGTGTTGAATTCTTTTTGTATGA
TTCAGCTGGCAAAGAAGAATTTGGTGATATTGTTGACGTTCATGTATGTA
ATGTAATATATAATTgcccaaatttgaaccaaaaagCAATTACTTGAATT
GCAAatctaaaaaaaagtaaaaggaaATTTGTCcctgttacacgtttttt
ataagaacatccaaaatatttgaagccttcggatgtttttaacatgctct
tattttcaccatttttttagcattttcgtccatttttctaaaaaattggg
tattttagagtcTGCACAACCTTAAAAtgtcttaacttgttcttaacatt
ttggtcatcaaagccttatgattttatatagtttgttcttataaaaaaac
atatatttgATTGCAAATACCTTGCTCATCTTCTTCAGATGAAAGATGCT
AAGATCATTGTTTTggtttatgacgtcacaaatatAGATTCTTTTGAAAA
CTTGTCAGAATGGTATAAGAAACTAGAGGCTGCCAATAATGGAAAAACTT
TACATGGTAAGagaattctttttcattttatcattaCCTTCTTAAATATC
AGACGAATAGGACATTTTTCGATAAACAGTTAATTTCTAGGTAAATTTAG
GCTCTGTTCTGAATTTAAGTCCGTCCGGCTTTAACtggatatttgttttt
tttacaagcaCTTTATTTTCATGTTTGTTTTGTCAAAAAGAAATGGTTTG
TACTTTTAAAGAAAGACATTATAGCTACTATTATCTAAAAGAAACTGgac
gaaatataaataaagTCGTTGATACACTTTAATTGTTATAAAACGTCAAA
ATCCCTTCAACTTTAATGTCTTCCACTGACCCAACAGCTggttggttgaa
agtgacgtaaaatcaatcaatacgtcacttacaaccaatccaCTGTTAGG
TCCATGTTGTAATGTaagaagacattgtaatggtgcatatcataaatagg
aaaataaacatttttgtttcttcttcatccTCAGGTGCTATTATAGGTAA
CAAAGTAGATTTAACAGATCGCCAAGTGGTGACCAGTGAGATGGGACAAA
ATTTGGCTGACCAATTACATCTGCATTTCTTTGAATGTTCTGCTGTAAGA
ATTTtttcttgtttactttttaatcggattaaatttgcaagattaaattt
cgcgaaattttctggatttaattttgcgagtcagagttttgagaaatttc
gcgtggatttaatttcgcaaataaGCATGAAAACAActgaaaaatagcca
tttttgccacaaatggaGACTTTAGACTGGTTTTCCGCCGAAAATGCAAT
ttattaatccgattaaagtattttCCCTCTTTTAATAAAAACTGTTCTTT
TATATAATGTGGGCTATTCGGTGGTTTCCAGGGAAATCTCGTAATTTTGA
TGGTATTAAGTTGTTCTCGGGAAAATTCGTACTTTTCTATGCAATTCCCG
AAAGGCGGTTGGGTTCATGGTGTACCCGAATCCGCCATTCTGTCAATTTT
TCCCCAGTATCCGTCACACCCAGCGTCAAAACGCGAGTTTTTCGCCTAAA
ATTCCatagattttgactttttggtgCCAATCACGAAATTCCTACCGATT
TTTTGCTCTTAAATCCAATTTTCTGGACAAAAAAAACCCAAATCGTCCGT
CTCCGACAAAGGATCTAAATTCCACTATTCTCTCCAGATTGTCGGTGAAA
TCCGCCATTCCGGACGAAGAAAAGACATTTTCTTCCCCTCTGTCAACCTT
AAAACCTTAAAACATCTTCTCTAACCAATGACTATCTTTTTTCGGCTTTT
GATTTCAAGGAACATTTTATTGGTCATGGGCTTAGGATTTCAATTATAGT
AGACTCCCAAGTGCCGTAGCTACCCCTTGGTATTGCCTCCCCCAATAATT
CTTccagaaatgttttttttatgaaatggaaaattgttctgttaaaaatt
tatttctcCAGCCATTTTTTGCGATTCTATTTTAAAAATTCCCCCCTCGG
GctaaaccatggttggccctcgcggtgtcactaaacctCACCCCCCCCCA
ATATCAAAATGCACTGCTCCCTGGTATTCGAACATCCGGGTACTCAAAAT
TTCGGTTATCTGAAGTAAAATGGAATTCCCTTGGAAAACACTCTCTTTTA
TTCTAAAGTAGAgttattttaattttcagattttcaataACCCCTGTTGA
GCAAAATTCGGGCCAAGCTTCCCTCAGTTATTCAAAACTAGAATATAGCC
ACTGAATATAAAATTGCCTTTTCTGAGACCTTTTTACCTGTAAATTGCCA
ATCATATCCTAGCAATACTCAAAACTTCCACAAaaatgccatagttttgt
ttgAAGCATGATAAATTAAGGTTTGGTTTGGGTCTAAACCTAGGCATGCC
ATGAAAATATCTCAAGATAAATTTTCCCTGAAAAACTTAAGATTATTAAG
TAGATTTAGAGTAGAGTagatttatttgaattttcagtttttcaaagAGG
TTTCTAACCCCTGTTTTCAAGATGAATTTTCGCTGAAAAACGTAAGAATA
TCTAGGTatgataaataaaaacacgctactcttataagaaaaatgtgtGT
ACCGTAAGTAAGATTTTTAATAAACATTGCTTGCTGGTTTAAAATTATAT
GTCATTTCAAACTCAATTAGTTCCAGATATCggattaaaaagaaaacaat
actaaaatcaatttatttcaaacattttataGAAAGATATGAGGAATATT
GATGCGCCATTTCAAACAATTGCAAAAGATTATTATGATCGAGTCAATGA
AGTACCatcttgatcaaaaataaaattgtttaaaaaatctaTCTGTAAAT
AGAGAAATCGCCCCTTCTCACTGACACAGTTGGACCCCTTCCCACTTGgt
aaatttgccaaaatattgtccccagtgGATAATTATAATCCAATTTTTTC
Cccattgaaaaatctcaaataaaccaatcctcactgcaaaatattatgct
tttttcccatccccactagattttctgacttgaaaacaaaagaatttaaa
tccccaacCATAAAAGATATGGAAATATAAATCCCCATCAATTTTCAGTC
CATAacttttacccccactggtTGAAAATACCCTACCAGGTCTGCGAGAA
GGGGTTCTTTCCAAAGAACAACGGTAAAAAACGCTGTTTCAATGTTCGCC
TAAAGTTCAACAGAACGTTATGGATGTTGGGAGAGCATTGGATGGATGTA
TCACAAGTATAAAGTGACATAATTTTATGAATGAATTGTAAATATGAACA
cgtgttttgtttttatcaatgcTGTTACAATGTTACAAGTATTGTAATTA
TTTATNAAAcacgtgtttttgtttttatcaatgaTGTTACAATGTTACAA
GTATTGTAAATATTTATGAAGAAAAGATTTTAACTTCCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070084-exon-scaffold_513-1491911889:603137..603314 | TCONS_00070084-exon-scaffold_513-1491911889:603137..603314 | Clytia hemisphaerica | exon |
| TCONS_00070084-exon-scaffold_513-1510915933:603137..603314 | TCONS_00070084-exon-scaffold_513-1510915933:603137..603314 | Clytia hemisphaerica | exon |
| TCONS_00070084-exon-scaffold_513-1575043694:603137..603314 | TCONS_00070084-exon-scaffold_513-1575043694:603137..603314 | Clytia hemisphaerica | exon |
| TCONS_00070084-exon-scaffold_513-1491911889:603660..603777 | TCONS_00070084-exon-scaffold_513-1491911889:603660..603777 | Clytia hemisphaerica | exon |
| TCONS_00070084-exon-scaffold_513-1510915933:603660..603777 | TCONS_00070084-exon-scaffold_513-1510915933:603660..603777 | Clytia hemisphaerica | exon |
| TCONS_00070084-exon-scaffold_513-1575043694:603660..603777 | TCONS_00070084-exon-scaffold_513-1575043694:603660..603777 | Clytia hemisphaerica | exon |
| TCONS_00070084-exon-scaffold_513-1491911889:606521..606630 | TCONS_00070084-exon-scaffold_513-1491911889:606521..606630 | Clytia hemisphaerica | exon |
| TCONS_00070084-exon-scaffold_513-1510915933:606521..606630 | TCONS_00070084-exon-scaffold_513-1510915933:606521..606630 | Clytia hemisphaerica | exon |
| TCONS_00070084-exon-scaffold_513-1575043694:606521..606630 | TCONS_00070084-exon-scaffold_513-1575043694:606521..606630 | Clytia hemisphaerica | exon |
| TCONS_00070084-exon-scaffold_513-1491911889:608269..608978 | TCONS_00070084-exon-scaffold_513-1491911889:608269..608978 | Clytia hemisphaerica | exon |
| TCONS_00070084-exon-scaffold_513-1510915933:608269..608978 | TCONS_00070084-exon-scaffold_513-1510915933:608269..608978 | Clytia hemisphaerica | exon |
| TCONS_00070084-exon-scaffold_513-1575043694:608269..608978 | TCONS_00070084-exon-scaffold_513-1575043694:608269..608978 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_513 | supercontig | scaffold_513:603137..608978 + |
Blast
BLAST of TCONS_00070084 vs. Swiss-Prot (Human)
Match: IFT27 (Intraflagellar transport protein 27 homolog OS=Homo sapiens GN=IFT27 PE=1 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.922e-30 Identity = 57/139 (41.01%), Postives = 83/139 (59.71%), Query Frame = 2
Query: 59 TTGVEFVTKQLSIASTLDSVEFFLYDSAGKEEFGDIVDVHMKDAKIIVLVYDVTNIDSFENLSEWYKKLEAANNGKTLHGAIIGNKVDLTDRQVVTSEMGQNLADQLHLHFFECSAKDMRNIDAPFQTIAKDYYDRVNE 475
TTG++ V K + + T DSVE F++DSAGKE F +++D + ++ LVYDVTN +SF N S+W +K + G +L G ++GNK DL R+ V S + A L FE S K+M N +APF +AK ++ E
Sbjct: 39 TTGMDLVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYDVTNEESFNNCSKWLEKARSQAPGISLPGVLVGNKTDLAGRRAVDSAEARAWALGQGLECFETSVKEMENFEAPFHCLAKQFHQLYRE 177
The following BLAST results are available for this feature:
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