TCONS_00070077 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070077
Unique NameTCONS_00070077
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1905

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070077 ID=TCONS_00070077|Name=TCONS_00070077|organism=Clytia hemisphaerica|type=transcript|length=1905bp
AAATAGCCacaaaatgcttaaaattagAACATCTATTGAACATTTATAAG
CTTAAAACCTATAACAATTTAGGATCGGCTAAAGAAAATTTGGACATTCT
TGTAGAAAAATCGTGAATGTTGCGCACGTTCCTATGAAAAATGAGAACTT
TTTTGGTTTCACATGATGAATGGCAGCATTAAATACAGAACTACAAGGCT
TATATTGATAAAAAGAGCATCCTATTGCAACATCATTCAATGAAGAAAGG
AAATCCGAGTAACGGAACTTTGAATTGTAAAGATCACTGAGCTTTATATA
GACCCTGGAGGCAGTTTCTTAATCCCGGCCAACCAAAAAATTTGAtagga
gttttttttttttaaagtgttaCCCTAATAGTAGCAAGCACTATTCAATT
GCAGTGTAAATGCCAACTGACCAATCACAGTTTGTTCTGTCAATTATTTC
GTTAGTTTTCTATGAACTGAAATCAAGATACCGTACTTCATTTTAATGAA
GTGTGAAAGAAGTCAAATACTTGTTTCCAAGCATCGATTTGTTCTTtaga
attaaattttttattggATCCACCAAAGTACGGTCTCAATCGGTTAGGAA
TTAAAGGGTGATAAGCATGAGTACAAATTGGTAGATAATGTGGATCAATG
AAATGACCAATGTTTGGATATCTGATGATTTTGTaattagttttaccagc
tttGTCCATTCGTTCTTTGGCAATGTCAGTAAATAAACAACTTTTCCAGT
TCATATCGTCTTCGCCAGCAATCATCAGTAGATCACCTTTGGATCGTTCT
ATTTGGTGGATTGCATTTGGGTTCTCTTTAGGATCTTCCAAGCAATCAGA
TATATCAACAGAACCACATTCTAAGAATCGTGCTGCGAACATATTAGCAG
GTATTTGTTCTGTGGTGTTACCTTTGTACGAAGTTGCTACTCCAACACTA
ACAACACTGCCGTTTAAGGTGCAAACAGCTTTCACTTGCGGCAAATGACT
GATCATCGCAATTGCTATATCGCCACCTTTGGATTCGCCAAGGACACCAA
CATTGTTAGAATCCACTAATTCATGTTGCCGCAGATTCTCAAATGCTTCT
TCAAAGTACTCTATATTTATTGGTTCTTGGGTGTATGTCTTAGGTAAACC
TTCACCGCCGAAATATCCCATTGCGTATGTTACAAACCCTTGGCTTGCCA
GATAAGCGGCATATTGCTCAGGCACCTGTTTCTTCTTTATACCACCAAAC
AAAGTCATGACAGCTGGGAAAGGTCCATCACCTTCAGGTACGAATACAGT
CCCCCGGAATTTACCAGTCTTTAAGACGTGTCTTGATACCTTTTGTGCTA
AGAATCGTGAAATTTGACTGGACGCAACCGGgggtaaattttctaaattt
tcactATGGTGACCTTCAAATACGTTAAAAgtatacggtaaatttcggac
ACCGTCTATCAATGTCGGACGATCATAAGACTCACCGCGTTTTTCCATGG
ACCAAAACAACCCCATATCTTCAATACCAGTATAAGTTCCACCAACAGAT
TcatttgttttcaaatcaaaacaaccatCTTTGTTCGTGTAAATGTGTGC
ATAAGATTGAAAGTCAAATCTTTCTTCTGGACAAATTAATGTACTTTGTA
TTGTGATCGGGGAATCGGGTTTGAATCCGTTTCCAGTGATGCCGATTTTC
TCCGAGGTGTGAGAGGTAGCAGGACTTGCaattattttgtttgatttcgT
GAAAGAAGTGCTGAAGCATCTTTTTATTATTcgattcattttattttttg
ctttttagtcctgaaaagaaaaatgagggaaaaatacaaaaagagtTTAC
TGAAAAAAGATAAGCAAAATAAAAACTCCTCCGAGGGAAACAAACATACA
ATAGG
Run BLAST on NCBI

transcript from alignment at scaffold_513:347677..349581+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070077 ID=TCONS_00070077|Name=TCONS_00070077|organism=Clytia hemisphaerica|type=transcript|length=1905bp|location=Sequence derived from alignment at scaffold_513:347677..349581+ (Clytia hemisphaerica)
AAATAGCCacaaaatgcttaaaattagAACATCTATTGAACATTTATAAG
CTTAAAACCTATAACAATTTAGGATCGGCTAAAGAAAATTTGGACATTCT
TGTAGAAAAATCGTGAATGTTGCGCACGTTCCTATGAAAAATGAGAACTT
TTTTGGTTTCACATGATGAATGGCAGCATTAAATACAGAACTACAAGGCT
TATATTGATAAAAAGAGCATCCTATTGCAACATCATTCAATGAAGAAAGG
AAATCCGAGTAACGGAACTTTGAATTGTAAAGATCACTGAGCTTTATATA
GACCCTGGAGGCAGTTTCTTAATCCCGGCCAACCAAAAAATTTGAtagga
gttttttttttttaaagtgttaCCCTAATAGTAGCAAGCACTATTCAATT
GCAGTGTAAATGCCAACTGACCAATCACAGTTTGTTCTGTCAATTATTTC
GTTAGTTTTCTATGAACTGAAATCAAGATACCGTACTTCATTTTAATGAA
GTGTGAAAGAAGTCAAATACTTGTTTCCAAGCATCGATTTGTTCTTtaga
attaaattttttattggATCCACCAAAGTACGGTCTCAATCGGTTAGGAA
TTAAAGGGTGATAAGCATGAGTACAAATTGGTAGATAATGTGGATCAATG
AAATGACCAATGTTTGGATATCTGATGATTTTGTaattagttttaccagc
tttGTCCATTCGTTCTTTGGCAATGTCAGTAAATAAACAACTTTTCCAGT
TCATATCGTCTTCGCCAGCAATCATCAGTAGATCACCTTTGGATCGTTCT
ATTTGGTGGATTGCATTTGGGTTCTCTTTAGGATCTTCCAAGCAATCAGA
TATATCAACAGAACCACATTCTAAGAATCGTGCTGCGAACATATTAGCAG
GTATTTGTTCTGTGGTGTTACCTTTGTACGAAGTTGCTACTCCAACACTA
ACAACACTGCCGTTTAAGGTGCAAACAGCTTTCACTTGCGGCAAATGACT
GATCATCGCAATTGCTATATCGCCACCTTTGGATTCGCCAAGGACACCAA
CATTGTTAGAATCCACTAATTCATGTTGCCGCAGATTCTCAAATGCTTCT
TCAAAGTACTCTATATTTATTGGTTCTTGGGTGTATGTCTTAGGTAAACC
TTCACCGCCGAAATATCCCATTGCGTATGTTACAAACCCTTGGCTTGCCA
GATAAGCGGCATATTGCTCAGGCACCTGTTTCTTCTTTATACCACCAAAC
AAAGTCATGACAGCTGGGAAAGGTCCATCACCTTCAGGTACGAATACAGT
CCCCCGGAATTTACCAGTCTTTAAGACGTGTCTTGATACCTTTTGTGCTA
AGAATCGTGAAATTTGACTGGACGCAACCGGgggtaaattttctaaattt
tcactATGGTGACCTTCAAATACGTTAAAAgtatacggtaaatttcggac
ACCGTCTATCAATGTCGGACGATCATAAGACTCACCGCGTTTTTCCATGG
ACCAAAACAACCCCATATCTTCAATACCAGTATAAGTTCCACCAACAGAT
TcatttgttttcaaatcaaaacaaccatCTTTGTTCGTGTAAATGTGTGC
ATAAGATTGAAAGTCAAATCTTTCTTCTGGACAAATTAATGTACTTTGTA
TTGTGATCGGGGAATCGGGTTTGAATCCGTTTCCAGTGATGCCGATTTTC
TCCGAGGTGTGAGAGGTAGCAGGACTTGCaattattttgtttgatttcgT
GAAAGAAGTGCTGAAGCATCTTTTTATTATTcgattcattttattttttg
ctttttagtcctgaaaagaaaaatgagggaaaaatacaaaaagagtTTAC
TGAAAAAAGATAAGCAAAATAAAAACTCCTCCGAGGGAAACAAACATACA
ATAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043633XLOC_043633Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070077-exon-scaffold_513-1491911889:347677..349581TCONS_00070077-exon-scaffold_513-1491911889:347677..349581Clytia hemisphaericaexon
TCONS_00070077-exon-scaffold_513-1510915933:347677..349581TCONS_00070077-exon-scaffold_513-1510915933:347677..349581Clytia hemisphaericaexon
TCONS_00070077-exon-scaffold_513-1575043694:347677..349581TCONS_00070077-exon-scaffold_513-1575043694:347677..349581Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:347677..349581 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.52216	5.58636	3.22263	2.91048	2.41915	1.76466	4.26928	4.29738	3.86093	5.46913	4.89211	3.08597	2.66908	1.96527	2.51671	2.72896	2.97435	2.78509	1.83199	2.26919	2.75335	2.65896	7.51323	7.35161	9.85128	9.55367	10.0832	9.48047	4.05446	4.09942
Blast
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BLAST of TCONS_00070077 vs. Swiss-Prot (Human)
Match: ACOT1 (Acyl-coenzyme A thioesterase 1 OS=Homo sapiens GN=ACOT1 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 1.104e-70
Identity = 139/405 (34.32%), Postives = 213/405 (52.59%), Query Frame = -3 
Query:  494 EKIGITGNGFKPDSPITIQSTLICPEERFDFQSYAHIYTNKDGCFDLKTNESVGGTYTGIEDMGLFWSMEKRGESYDRPTLIDGVRNLPYTFNVFEGHHSENLENLPPVASSQISRFLAQKVSRHVLKTGKFRGTVFVPEGDGPFPAVMTLFGGIKKKQVPEQYAAYLASQGFVTYAMGYFGGEGLPKTYTQEPINIEYFEEAFENLRQHELVDSNNVGVLGESKGGDIAIAMISHLPQVKAVCTLNGSVVSVGVATSYKGNTTEQIPANMFAARFLECGSVDISDCLEDPKENPN--AIHQIERSKGDLLMIAGEDDMNWKSCLFTDIAKERMDKAGKTNYKIIRYPNIGHFIDPHYLPICTHAYHPLIPNRLRPYFGGSNKKFNSKEQIDAWKQVFDFFHTSL 1702
            E + I   G  P+ P+T++++L   E+   FQ++A    +  G  DL+   ++GG++ G+E MGL W++E   +   R    D    L     V +GH  +    L  V   +   FL   V R  ++ G+ RGT+F+P   GPFP ++ +FG      + E  A+ LA +GF   A+ Y+  E LPKT   E +++EYFEEA   L  H  V    VG+LG SKGG++ ++M S L  + A   +NGSV +VG    YKG T   +  N    +  + G  DI D L  P E P+  +   +ER++   L + G+DD NWKS  + + A +R+   G+   +II YP  GH+I+P Y P+C  + H L+ +   P   G   + ++  Q+DAWKQ+  FFH  L
Sbjct:   17 EPVRIAVRGLAPEQPVTLRASLR-DEKGALFQAHARYRADTLGELDLERAPALGGSFAGLEPMGLLWALEPE-KPLVRLVKRDVRTPLAVELEVLDGHDPDPGRLLCRVRHERY--FLPPGVRREPVRAGRVRGTLFLPPEPGPFPGIVDMFG--TGGGLLEYRASLLAGKGFAVMALAYYNYEDLPKT--METLHLEYFEEAVNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKGITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFLVGQDDHNWKSEFYANEACKRLQAHGRRKPQIICYPETGHYIEPPYFPLCRASLHALVGS---PIIWGGEPRAHAMAQVDAWKQLQTFFHKHL 410
The following BLAST results are available for this feature:
BLAST of TCONS_00070077 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACOT11.104e-7034.32Acyl-coenzyme A thioesterase 1 OS=Homo sapiens GN=... [more]
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