TCONS_00070073 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070073
Unique NameTCONS_00070073
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length740

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070073 ID=TCONS_00070073|Name=TCONS_00070073|organism=Clytia hemisphaerica|type=transcript|length=740bp
AGGCATTGTGAAAATCCTTGACAGAAAAAGCACAAGAGCATCCAATCTTT
ATCATGTACGTCAAATACCTGAGAACATTTTCCTGCTcacctgatttttt
gcagattttATTTTGTCAACTTAATTTGTGCCCTTTTGTAGATTATTTGT
CATTATattatgaattgaaaaaaattgtgagaaTATTATAATTTTGAGCT
ACGAAAATGTTCCAAATCTTTTTCTTGAATGGTGTGatcagattttaaat
tttgttgcatttgtcatttttaggTTCTATGGCATACAGACGTGCAAACC
TgggtaaaagaagaaaatatacCAAATCATCTGACACAGAGTAATAATGA
ATTGACAATCGCAACTGGGACATGTTTGGACAGCCAACCAAACTGTTAAA
ATTGCGAAaggtgaaagttgataaaaaagAAGTACTACCAAAcattgaca
aaatatttgaacCTGAGTAAGTGTCTAGTTAAGTTCCTTTAAATCgtcca
aattttgcaaaatgattAACTTGATCCTGCACCAGGAAAATATATCTAAT
CAttggatatttttttaattcttgaCCTCAATTTTAAGTAATAGCATGTT
AAGTAATAGTAATGTCATTTTCTAAAAGATGAGAATTAACTTGTAAATTG
TATGTTCTTTTCATTTGTAGACATGGATTTGCTGGGCCATCCGAAGAAGA
TAATACAATAACTGAAAATGATCTTCCAAGAAATCTGGAC
Run BLAST on NCBI

transcript from alignment at scaffold_513:199918..200657+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070073 ID=TCONS_00070073|Name=TCONS_00070073|organism=Clytia hemisphaerica|type=transcript|length=740bp|location=Sequence derived from alignment at scaffold_513:199918..200657+ (Clytia hemisphaerica)
AGGCATTGTGAAAATCCTTGACAGAAAAAGCACAAGAGCATCCAATCTTT
ATCATGTACGTCAAATACCTGAGAACATTTTCCTGCTcacctgatttttt
gcagattttATTTTGTCAACTTAATTTGTGCCCTTTTGTAGATTATTTGT
CATTATattatgaattgaaaaaaattgtgagaaTATTATAATTTTGAGCT
ACGAAAATGTTCCAAATCTTTTTCTTGAATGGTGTGatcagattttaaat
tttgttgcatttgtcatttttaggTTCTATGGCATACAGACGTGCAAACC
TgggtaaaagaagaaaatatacCAAATCATCTGACACAGAGTAATAATGA
ATTGACAATCGCAACTGGGACATGTTTGGACAGCCAACCAAACTGTTAAA
ATTGCGAAaggtgaaagttgataaaaaagAAGTACTACCAAAcattgaca
aaatatttgaacCTGAGTAAGTGTCTAGTTAAGTTCCTTTAAATCgtcca
aattttgcaaaatgattAACTTGATCCTGCACCAGGAAAATATATCTAAT
CAttggatatttttttaattcttgaCCTCAATTTTAAGTAATAGCATGTT
AAGTAATAGTAATGTCATTTTCTAAAAGATGAGAATTAACTTGTAAATTG
TATGTTCTTTTCATTTGTAGACATGGATTTGCTGGGCCATCCGAAGAAGA
TAATACAATAACTGAAAATGATCTTCCAAGAAATCTGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043631XLOC_043631Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070073-exon-scaffold_513-1491911889:199918..200657TCONS_00070073-exon-scaffold_513-1491911889:199918..200657Clytia hemisphaericaexon
TCONS_00070073-exon-scaffold_513-1510915933:199918..200657TCONS_00070073-exon-scaffold_513-1510915933:199918..200657Clytia hemisphaericaexon
TCONS_00070073-exon-scaffold_513-1575043694:199918..200657TCONS_00070073-exon-scaffold_513-1575043694:199918..200657Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:199918..200657 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.534505	0.335891	3.10162	3.47851	0.720809	0.569593	0.303162	0.0872556	0.130979	0.0797973	0	0.109026	0.0486712	0.138439	0.202977	0.26173	0.0556108	0.0615798	0.223051	0.095789	0.868471	0.497655	0.493672	0.395841	0.0771528	0.40903	1.56044	0.771805	0.317989	0.584271
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070073 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top