TCONS_00070067 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070067
Unique NameTCONS_00070067
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length646

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070067 ID=TCONS_00070067|Name=TCONS_00070067|organism=Clytia hemisphaerica|type=transcript|length=646bp
GTTTGAGCAGGTTGGTTTTGCACTTGGCCAACTTCTCCTACGAAAAACgt
aACAATCCAAAAGGCACTGGCAATACTCCACCACTAACGATGCACGTATC
TGATTCTGATGATGAAGTTTGGCTTCATCGCTGTCGCTTCATCAAGAACT
TCCTGGAAAGGGCCAGAAGAAAAAGTAGTAGCTCTCGACTATGCACCAGA
AGGTTCTCCTCAGATAATCTCGAATTTTTATCTTCTAATGTAGATGCAAC
CGCAACATCTCTAATTGAAAGACATCATAGACgaacattttcagaaaatt
catCATCACAACCGAGGAAAGCTTCTACCTTAGCTTCTTACTTAGAACAA
GAACTGAACCAAATGAAGAAGTTACATTAAGTGAAATAGCAACTTCCCTC
CAAAATTTAGGAGACGATTTTGGAAGTAGCCAATGCTTAATTCCATTTCC
ATCATTAGTTTCTTCTGATTCTATGcataaagatggagggcaaggttctc
taaaaagtgccGAAGCAGTTctttagaaattaaaaaaaataaataaaagt
ttttggtcgtaaaaattggattttcttatttggggaaattcccttatgtc
acttttagggaaaaagagcatttctcgcgattggattgatattttc
Run BLAST on NCBI

protein sequence of TCONS_00070067-protein

>TCONS_00070067-protein ID=TCONS_00070067-protein|Name=TCONS_00070067-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
LSRLVLHLANFSYEKRNNPKGTGNTPPLTMHVSDSDDEVWLHRCRFIKNF
LERARRKSSSSRLCTRRFSSDNLEFLSSNVDATATSLIERHHRRTFSENS
SSQPRKASTLASYLEQELNQMKKLH
Run BLAST on NCBI

transcript from alignment at scaffold_513:78797..81736+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070067 ID=TCONS_00070067|Name=TCONS_00070067|organism=Clytia hemisphaerica|type=transcript|length=2940bp|location=Sequence derived from alignment at scaffold_513:78797..81736+ (Clytia hemisphaerica)
GTTTGAGCAGGTTGGTTTTGCACTTGGCCAACTTCTCCTACGAAAAACGT
AACGATTTTTATTTCTTTGGCTTGTAATATTATTAACTTAAAAAGGGATC
CTcacttactcttaggtgccaaataaacgggggggggggNNNNNNNNNNN
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NNactaaatttaggctttttagagtaaaacaaggaattttcctttttgta
gctgggaattttttcaaaaattaataaacgggggggtccttataaggtcc
gggggggggttggaaaaaaatcgaaaaatcaacaagcgggggggcccgtt
ttttattttaagagtAATTGAGTTTTTAATGGACTTGCTCTAGTGCTAAT
TTTAGGGTtcccttttcattttcaaaccttttaaaattttaggtaACAAT
CCAAAAGGCACTGGCAATACTCCACCACTAACGATGCACGTATCTGATTC
TGATGATGAAGTTTGGCTTCATCGCTGTCGCTTCATCAAGAACTTCCTGG
AAAGGGCCAGAAGAAAAAGTAGTAGCTCTCGACTATGCACCAGAAGGTTC
TCCTCAGATAATCTCGAATTTTTATCTTCTAATGTAGATGCAACCGCAAC
ATCTCTAATTGAAAGACATCATAGACgaacattttcagaaaattcatCAT
CACAACCGAGGAAAGCTTCTACCTTAGCTTCTTACTTAGAACAAGAACTG
AACCAAATGAAGAAGTTACATTAAGTGAAATAGCAACTTCCCTCCAAAAT
TTAGGAGACGATTTTGGAAGTAGCCAATGCTTAATTCCATTTCCATCATT
AGTTTCTTCTGATTCTATGcataaagatggagggcaaggttctctaaaaa
gtgccGAAGCAGTTctttagaaattaaaaaaaataaataaaagtttttgg
tcgtaaaaattggattttcttatttggggaaattcccttatgtcactttt
agggaaaaagagcatttctcgcgattggattgatattttc

Coding sequence (CDS) from alignment at scaffold_513:78797..81736+

>TCONS_00070067 ID=TCONS_00070067|Name=TCONS_00070067|organism=Clytia hemisphaerica|type=CDS|length=756bp|location=Sequence derived from alignment at scaffold_513:78797..81736+ (Clytia hemisphaerica)
TTGAGCAGGTTGGTTTTGCACTTGGCCAACTTCTCCTACGAAAAACgtaA
CAATCCAAAAGGCACTGGCAATACTCCACCACTAACGATGCACGTATCTG
ATTCTGATGATGAAGTTTGGCTTCATCGCTGTCGCTTCATCAAGAACTTC
CTGGAAAGGGCCAGAAGAAAAAGTAGTAGCTCTCGACTATGCACCAGAAG
GTTCTCCTCAGATAATCTCGAATTTTTATCTTCTAATGTAGATGCAACCG
CAACATCTCTAATTGAAAGACATCATAGACgaacattttcagaaaattca
tCATCACAACCGAGGAAAGCTTCTACCTTAGCTTCTTACTTAGAACAAGA
ACTGAACCAAATGAAGAAGTTACATTAATTGAGCAGGTTGGTTTTGCACT
TGGCCAACTTCTCCTACGAAAAACgtaACAATCCAAAAGGCACTGGCAAT
ACTCCACCACTAACGATGCACGTATCTGATTCTGATGATGAAGTTTGGCT
TCATCGCTGTCGCTTCATCAAGAACTTCCTGGAAAGGGCCAGAAGAAAAA
GTAGTAGCTCTCGACTATGCACCAGAAGGTTCTCCTCAGATAATCTCGAA
TTTTTATCTTCTAATGTAGATGCAACCGCAACATCTCTAATTGAAAGACA
TCATAGACgaacattttcagaaaattcatCATCACAACCGAGGAAAGCTT
CTACCTTAGCTTCTTACTTAGAACAAGAACTGAACCAAATGAAGAAGTTA
CATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043627XLOC_043627Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070067-proteinTCONS_00070067-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070067-exon-scaffold_513-1491911889:78797..78844TCONS_00070067-exon-scaffold_513-1491911889:78797..78844Clytia hemisphaericaexon
TCONS_00070067-exon-scaffold_513-1510915933:78797..78844TCONS_00070067-exon-scaffold_513-1510915933:78797..78844Clytia hemisphaericaexon
TCONS_00070067-exon-scaffold_513-1575043694:78797..78844TCONS_00070067-exon-scaffold_513-1575043694:78797..78844Clytia hemisphaericaexon
TCONS_00070067-exon-scaffold_513-1491911889:81139..81736TCONS_00070067-exon-scaffold_513-1491911889:81139..81736Clytia hemisphaericaexon
TCONS_00070067-exon-scaffold_513-1510915933:81139..81736TCONS_00070067-exon-scaffold_513-1510915933:81139..81736Clytia hemisphaericaexon
TCONS_00070067-exon-scaffold_513-1575043694:81139..81736TCONS_00070067-exon-scaffold_513-1575043694:81139..81736Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:78797..81736 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.405924	0.633343	0.551529	0.719447	1.97068	0.692114	0.939382	1.75888	0.820954	1.18636	1.06926	0.648823	2.4297	1.79433	1.10639	0.742076	0.548506	0.499734	0.604108	0.45154	0.156988	0.45944	0.18617	0.592394	0.697316	2.64494	0.222641	0.118804	0.450544	0.367226
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070067 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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