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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070066 ID=TCONS_00070066|Name=TCONS_00070066|organism=Clytia hemisphaerica|type=transcript|length=1651bp
atttaaaacagcgatgtaaaaattatttttatttcttgacTTTAAATAAG
AAAGTTATAATTCCGTTACCAAAAAAAACTAGGAGTAAATTTTTATACAT
TAAAAAACGAGTTTTATTATCTTAAATCTACCGTCATAAAATATTCATCT
TAAATTCCCAATGTCTCCTCAAAACCAGAATTGTTCGTAGATGAGGTCAT
TCCAAGCAGGACATCATTTCAAGGGCTATCCTCCCCATAATGACTCCATC
ATCATTAACTATAATTCCATTCATGTCAACAACAATCCATTGCGAAAAGG
TTGTTCTCCATAGAAATCGCACCCAAAATGAAAAGGTTCGTCTCCAATGA
ATTTTCAACCAATATGTACTACAGCATGCGTTTCAATctcatttgattgt
ttttaaatCTCTGGAGTAAAACCCGTACTTCGGGTTCACTGGCATCCATG
GAATCTAAGTCGACCAGATATGAAGTGGTCGTTTCAAATAATGATCTGCA
CATCGATAGTCTGGAATGAAAAGAAGTGTGATGATGGTTGCGCAAAACTG
CTACGTATAAAAAACTACATCAACCATTTAAGTGCCACGGCCATTTTTtt
ctagttcaaactttaaaagcttatatctccggatctagaaggagtggTGT
AGGTGGAGGTCTGcaagggggtacttaggcacaAATGAGTGCTGGGTacg
tgcggacggtaagggtcggttttttcacctttcaaagtctctctaagggt
cgcaaaaatcagaaagcTTTAAATAAGTCTCAttttaagggtcggaaaat
tttaggattttaggatttttttttcaaaatcgaagaaaaaaaaaaaaaaa
gtctctaagggtcaccttttcagcaaaaatcagtctctctaagggtcggt
tttcggaggtcccgtctacacatacccctcatcctcCAACCCTCTAGTAC
CATCCCCCAGgataaaaaaatacattacAAAGCTTTTAGAGAAACTTATA
TTAATGGTGTAACTTTGGTAAAAGAATGATAGagacaaatttcgaaaaag
ccCGTTCAAAAAAGTATATTCCAATTTGTTTTATAGAAACAGAGAGGTGT
TTTGACCTAACAATCTGTATAGAAACTATGGGAACaagttggagttttta
caagctctcgtttgattCAGTTGGTCGTTAAGCTgtaataaaaagttttt
gttaatttaTCTAAAGAACGTTTCatttctattacttcaaatgaccaatt
gttataaagtatcttataaaaactccatctcatctcgGGAAGAAATTGAG
AAATGAGGAAGAATATTATTCAataattattgccatggtgattaactccc
ggcggattttattaaaactacttcccattcatttaatgtctcaagagaca
taatcaccatggtaattgtttgaatacgaggcaagtgatgttcgtgacgt
aatttatgaaaccgTCTATTACTTAAAGAAATACTAAAATGGCTTACCTc
gcaggggggggtcaagcagttaatcCAGAACATCATCCGTAGTAACTGAT
TTTGGATGATATTTAGGACCATCCACCCATTCTGACACTTAATCCACACT
GGATTTACTGTTTTTCAGTCACAATCTTTGTATACCACCCCCTAAAACAG
T Run BLAST on NCBI transcript from alignment at scaffold_513:11977..14062+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070066 ID=TCONS_00070066|Name=TCONS_00070066|organism=Clytia hemisphaerica|type=transcript|length=2086bp|location=Sequence derived from alignment at scaffold_513:11977..14062+ (Clytia hemisphaerica)
atttaaaacagcgatgtaaaaattatttttatttcttgacTTTAAATAAG
AAAGTTATAATTCCGTTACCAAAAAAAACTAGGAGTAAATTTTTATACAT
TAAAAAACGAGTTTTATTATCTTAAATCTACCGTCATAAAATATTCATCT
TAAATTCCCAATGTCTCCTCAAAACCAGAATTGTTCGTAGATGAGGTCAT
TCCAAGCAGGACATCATTTCAAGGGCTATCCTCCCCATAATGACTCCATC
ATCATTAACTATAATTCCATTCATGTCAACAACAATCCATTGCGAAAAGG
TTGTTCTCCATAGAAATCGCACCCAAAATGAAAAGGTTCGTCTCCAATGA
ATTTTCAACCAATATGTACTACAGCATGCGTTTCAATctcatttgattgt
ttttaaatCTCTGGAGTAAAACCCGTACTTCGGGTTCACTGGCATCCATG
GAATCTAAGTCGACCAGATATGAAGTGGTCGTTTCAAATAATGATCTGCA
CATTGATAGTCTATAATGAAAAGTAGTGTGATGGGTtacaaattgttttt
gaaattagCCAAAATTTTTGGCAAAAGCTTTTTAGACAATCTACgcatgg
caaacgatagcccttaACCCAacaagcataaatatggtacaATATCATAT
TCTACACATCGATAGTCTGGAATGAAAAGAAGTGTGATGATGGTTGCGCA
AAACTGCTACGTATAAAAAACTACATCAACCATTTAAGTGCCACGGCCAT
TTTTttctagttcaaactttaaaagcNCACATTGATAGTCTAGAATGAAA
AGTAGTGTGATGGGTtacaaattgtttttgaaagtaGCCAAAAATTTTGG
CAAAAGCTTTTTAGACAATCTACgcatggcaaacgatagcccttaACCCA
acaagcataaatatggtacaATATCATATTCTACACATCGATAGTCTGGA
ATGAAAAGAAGTGTGATGATGGTTGCGCAAAACTGCTACGTATAAAAAAC
TACATCAACCATTTAAGTGCCACGGCCATTTTTttctagttcaaacttta
aaagcttatatctccggatctagaaggagtggTGTAGGTGGAGGTCTGca
agggggtacttaggcacaAATGAGTGCTGGGTacgtgcggacggtaaggg
tcggttttttcacctttcaaagtctctctaagggtcgcaaaaatcagaaa
gcTTTAAATAAGTCTCAttttaagggtcggaaaattttaggattttagga
tttttttttcaaaatcgaagaaaaaaaaaaaaaaagtctctaagggtcac
cttttcagcaaaaatcagtctctctaagggtcggttttcggaggtcccgt
ctacacatacccctcatcctcCAACCCTCTAGTACCATCCCCCAGgataa
aaaaatacattacAAAGCTTTTAGAGAAACTTATATTAATGGTGTAACTT
TGGTAAAAGAATGATAGagacaaatttcgaaaaagccCGTTCAAAAAAGT
ATATTCCAATTTGTTTTATAGAAACAGAGAGGTGTTTTGACCTAACAATC
TGTATAGAAACTATGGGAACaagttggagtttttacaagctctcgtttga
ttCAGTTGGTCGTTAAGCTgtaataaaaagtttttgttaatttaTCTAAA
GAACGTTTCatttctattacttcaaatgaccaattgttataaagtatctt
ataaaaactccatctcatctcgGGAAGAAATTGAGAAATGAGGAAGAATA
TTATTCAataattattgccatggtgattaactcccggcggattttattaa
aactacttcccattcatttaatgtctcaagagacataatcaccatggtaa
ttgtttgaatacgaggcaagtgatgttcgtgacgtaatttatgaaaccgT
CTATTACTTAAAGAAATACTAAAATGGCTTACCTcgcaggggggggtcaa
gcagttaatcCAGAACATCATCCGTAGTAACTGATTTTGGATGATATTTA
GGACCATCCACCCATTCTGACACTTAATCCACACTGGATTTACTGTTTTT
CAGTCACAATCTTTGTATACCACCCCCTAAAACAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070066-exon-scaffold_513-1491911889:11977..12477 | TCONS_00070066-exon-scaffold_513-1491911889:11977..12477 | Clytia hemisphaerica | exon |
| TCONS_00070066-exon-scaffold_513-1510915933:11977..12477 | TCONS_00070066-exon-scaffold_513-1510915933:11977..12477 | Clytia hemisphaerica | exon |
| TCONS_00070066-exon-scaffold_513-1575043694:11977..12477 | TCONS_00070066-exon-scaffold_513-1575043694:11977..12477 | Clytia hemisphaerica | exon |
| TCONS_00070066-exon-scaffold_513-1491911889:12913..14062 | TCONS_00070066-exon-scaffold_513-1491911889:12913..14062 | Clytia hemisphaerica | exon |
| TCONS_00070066-exon-scaffold_513-1510915933:12913..14062 | TCONS_00070066-exon-scaffold_513-1510915933:12913..14062 | Clytia hemisphaerica | exon |
| TCONS_00070066-exon-scaffold_513-1575043694:12913..14062 | TCONS_00070066-exon-scaffold_513-1575043694:12913..14062 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_513 | supercontig | scaffold_513:11977..14062 + |
Blast
The following BLAST results are available for this feature:
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